diff rapsodyn/PrepareFastqLight.xml @ 0:442a7c88b886 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/rapsodyn/PrepareFastqLight.xml	Wed Sep 10 09:18:15 2014 -0400
@@ -0,0 +1,26 @@
+<tool id="PrepareFastqLight" name="PrepareFastqLight" version="0.01">
+<description>Fastq preparation</description>
+<command interpreter="perl">
+    PrepareFastqLight.pl $input_read1_file $input_read2_file $output_read1_file $output_read2_file $quality_type $min_quality $min_length
+</command>
+<inputs>
+<param name="input_read1_file"  type="data" format="txt,fastq" label="Select a suitable FASTQ READ 1 file from your history"/>
+<param name="input_read2_file"  type="data" format="txt,fastq" label="Select a suitable FASTQ READ 2 file from your history"/>
+<param name="quality_type" type="select" label="Select input quality format">
+   <option value="sanger">Sanger</option>
+   <option value="illumina">Illumina 1.3-1.7</option>
+ </param>
+<param name="min_quality" type="integer" value="30" label="Minimum quality for 5' and 3' trimming "/>
+<param name="min_length" type="integer" value="30" label="Minimum sequence length after trimming"/>
+</inputs>
+<outputs>
+<data name="output_read1_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
+<data name="output_read2_file" format="fastqsanger" label="${tool.name} on ${on_string}"/>
+</outputs>
+
+<help>
+
+
+
+</help>
+</tool>