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view rapsodyn/MergeFile2x.xml @ 1:7f36bd129321 draft

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author mcharles
date Wed, 10 Sep 2014 10:24:01 -0400
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<tool id="MergeFile2x" name="MergeFile2x" version="0.01">
<description>Merge splitted file</description>
<command interpreter="perl">
    MergeFile2x.pl $input_file1 $input_file2 > $output_file 
</command>
<inputs>
<param name="out_format" type="select" label="Format">
	<option value="pileup">pileup</option>
	<option value="fastq">fastq</option>
	<option value="fastqsanger">fastqsanger</option>
	<option value="sam">sam</option>
	<option value="fasta">fasta</option>
</param>
<param name="input_file1"  type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 1st file from your history"/>
<param name="input_file2"  type="data" format="txt,fastq,fastqsanger,fastqillumina,pileup,sam,fasta" label="Select a suitable 2nd file from your history"/>
</inputs>
<outputs>
<data name="output_file" format="txt" label="MERGE">
	<change_format>
		<when input="out_format" value="pileup" format="pileup" />
		<when input="out_format" value="fastq" format="fastq" />
		<when input="out_format" value="fastqsanger" format="fastqsanger" />
		<when input="out_format" value="sam" format="sam" />
		<when input="out_format" value="fasta" format="fasta" />
	</change_format>
</data>
</outputs>

<help>



</help>
</tool>