Mercurial > repos > md-anderson-bioinformatics > heat_map_creation

comparison mda_heatmap_gen.xml @ 36:11a5827d5559 draft

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Uploaded
author insilico-bob
date Tue, 06 Nov 2018 16:29:17 -0500
parents 6ad3c487987d
children f2272e907f1b
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35:6ad3c487987d 36:11a5827d5559
1 <?xml version="1.0" encoding="UTF-8" ?> 1 <?xml version="1.0" encoding="UTF-8" ?>
2 <tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.5"> 2 <tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.3">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.4.1">r-base</requirement> 4 <requirement type="package" version="3.4.1">r-base</requirement>
5 <requirement type="package" version="1.8">java</requirement> 5 <requirement type="package" version="8.0.144">openjdk</requirement>
6 </requirements> 6 </requirements>
7 <description>Create Clustered Heat Maps</description> 7 <description>Create Clustered Heat Maps</description>
8 <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap.sh "standard" "Heat_Map_$hmname" "$hmdesc" '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__/' 0 0 labels labels 'None' 8 <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap.sh "standard" "Heat_Map_$hmname" "$hmdesc" '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__/' 0 0 labels labels 'None'
9 #for $op in $operations 9 #for $op in $operations
10 '${op.class_name}' 10 '${op.class_name}'