comparison heatmap.sh @ 32:16593e40c2cd draft

Version 2.0.5

31:e01b833f5d43

echo $1 $2 $3 $4 $5 $6 $7 $8 $9 ${10} ${11} ${12} ${13} ${14} ${15} ${16} ${17}
#create temp directory for row and col order and dendro files.
tdir=${11}/$(date +%y%m%d%M%S)
echo $tdir
mkdir $tdir
#run R to cluster matrix
output="$(R --slave --vanilla --file=${11}/CHM.R --args $3 $4 $5 $6 $7 $8 $9 $tdir/ROfile.txt $tdir/COfile.txt $tdir/RDfile.txt $tdir/CDfile.txt ${12} ${13} ${14} ${15} 2>&1)"
rc=$?;
if [ $rc != 0 ]
then

32:16593e40c2cd

echo $1 $2 $3 $4 $5 $6 $7 $8 $9 ${10} ${11} ${12} ${13} ${14} ${15} ${16} ${17}

#run python to validate the input matrix and covariate files (if any)
#output="$(python  ${11}/mda_heatmap_gen.py $@)"
output=$(python  ${11}/mda_heatmap_gen.py "$@")
rc=$?;
echo $output;
if [ $rc != 0 ]
then
  exit $rc;
fi


#create temp directory for row and col order and dendro files.
tdir=${11}/$(date +%y%m%d%M%S)
echo $tdir
mkdir $tdir

#run R to cluster matrix
output="$(R --slave --vanilla --file=${11}/CHM.R --args $3 $4 $5 $6 $7 $8 $9 $tdir/ROfile.txt $tdir/COfile.txt $tdir/RDfile.txt $tdir/CDfile.txt ${12} ${13} ${14} ${15} 2>&1)"
rc=$?;
if [ $rc != 0 ]
then