Mercurial > repos > md-anderson-bioinformatics > heat_map_creation

diff mda_heatmap_gen.xml @ 35:6ad3c487987d draft

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Uploaded ng-chm version 2.5.3 handles java 8 issue and updates to heatmap viewer
author insilico-bob
date Mon, 05 Nov 2018 11:17:23 -0500
parents 58437af2d675
children 11a5827d5559
line wrap: on
line diff
--- a/mda_heatmap_gen.xml	Thu Feb 08 14:45:46 2018 -0500
+++ b/mda_heatmap_gen.xml	Mon Nov 05 11:17:23 2018 -0500
@@ -1,14 +1,15 @@
 <?xml version="1.0" encoding="UTF-8" ?>
-<tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.3">
+<tool id="mda_heatmap_gen" name="NG-CHM Generator" version="2.5">
    <requirements>
      <requirement type="package" version="3.4.1">r-base</requirement> 
+	 <requirement type="package" version="1.8">java</requirement>
    </requirements>
    <description>Create Clustered Heat Maps</description>
    <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap.sh  "standard" "Heat_Map_$hmname" "$hmdesc" '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__/' 0 0 labels labels 'None'
     #for $op in $operations
-       ${op.class_name}
-       ${op.repeatinput.file_name}
-       ${op.cat}
+       '${op.class_name}'
+       '${op.repeatinput.file_name}'
+       '${op.cat}'
       #end for
  	'$output' 
  </command>