Mercurial > repos > md-anderson-bioinformatics > heat_map_creation_advanced

comparison mda_advanced_heatmap_gen.xml @ 4:d747292c486f draft

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Uploaded
author insilico-bob
date Tue, 06 Nov 2018 16:30:12 -0500
parents 9359e0a0d40b
children 15c71ed09efa
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3:9359e0a0d40b 4:d747292c486f
1 <?xml version="1.0" encoding="UTF-8" ?> 1 <?xml version="1.0" encoding="UTF-8" ?>
2 <tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.5.3"> 2 <tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.4.1">r-base</requirement> 4 <requirement type="package" version="3.4.1">r-base</requirement>
5 <requirement type="package" version="1.8">java</requirement> 5 <requirement type="package" version="8.0.144">openjdk</requirement>
6 </requirements> 6 </requirements>
7 <description> Create Clustered Heat Maps with Advanced Options</description> 7 <description> Create Clustered Heat Maps with Advanced Options</description>
8 <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' 8 <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems'
9 9
10 " 10 "
11 #for $attr in $hm_attribute 11 #for $attr in $hm_attribute
12 '${attr.attrbute_key}':'${attr.attrbute_value}'; 12 '${attr.attrbute_key}':'${attr.attrbute_value}';
13 #end for 13 #end for