Mercurial > repos > md-anderson-bioinformatics > heat_map_creation_advanced
diff mda_advanced_heatmap_gen.xml @ 3:9359e0a0d40b draft
Uploaded ng-chm version 2.5.3 handles java 8 issue and updates to heatmap viewer
author | insilico-bob |
---|---|
date | Mon, 05 Nov 2018 11:23:57 -0500 |
parents | 19382473a76b |
children | d747292c486f |
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--- a/mda_advanced_heatmap_gen.xml Thu Feb 08 14:47:49 2018 -0500 +++ b/mda_advanced_heatmap_gen.xml Mon Nov 05 11:23:57 2018 -0500 @@ -1,22 +1,23 @@ <?xml version="1.0" encoding="UTF-8" ?> -<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3"> +<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.5.3"> <requirements> <requirement type="package" version="3.4.1">r-base</requirement> + <requirement type="package" version="1.8">java</requirement> </requirements> <description> Create Clustered Heat Maps with Advanced Options</description> -<command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' + <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' " #for $attr in $hm_attribute - ${attr.attrbute_key}:${attr.attrbute_value}; + '${attr.attrbute_key}':'${attr.attrbute_value}'; #end for " #for $op in $operations - ${op.class_name} - ${op.repeatinput.file_name} - ${op.cattype.cat} - ${op.cattype.bartype} + '${op.class_name}' + '${op.repeatinput.file_name}' + '${op.cattype.cat}' + '${op.cattype.bartype}' #end for '$output' </command>