Mercurial > repos > md-anderson-bioinformatics > heat_map_creation_advanced
changeset 8:c1be063b2454 draft
Uploaded
| author | insilico-bob |
|---|---|
| date | Mon, 06 Jul 2020 14:26:14 -0400 |
| parents | c5489978071a |
| children | 2637090c040c |
| files | GalaxyMapGen.jar heatmap_advanced.sh mda_advanced_heatmap_gen.xml mda_heatmap_viz.zip |
| diffstat | 4 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/heatmap_advanced.sh Tue Jan 28 15:33:09 2020 -0500 +++ b/heatmap_advanced.sh Mon Jul 06 14:26:14 2020 -0400 @@ -351,8 +351,11 @@ #END: Construct JSON for classification files #echo "CLASSIFICATION JSON: "$classJson +#Add build platform JSON for distinction between GenePattern and Galaxy Builders +platformJson='"build_platform": "Galaxy",' + #Complete construction of Parameter JSON file by adding all JSON sections created above -parmJson=$parmJson$rowConfigJson$colConfigJson$attribJson$matrixJson$classJson +parmJson=$parmJson$rowConfigJson$colConfigJson$attribJson$matrixJson$platformJson$classJson parmJson=$parmJson'}' #echo "COMPLETED PARAMETER JSON: "$parmJson
--- a/mda_advanced_heatmap_gen.xml Tue Jan 28 15:33:09 2020 -0500 +++ b/mda_advanced_heatmap_gen.xml Mon Jul 06 14:26:14 2020 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="UTF-8" ?> -<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3"> +<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.11.4"> <requirements> <requirement type="package" version="3.4.1">r-base</requirement> <requirement type="package" version="8.0.144">openjdk</requirement>