Mercurial > repos > md-anderson-bioinformatics > heat_map_creation_advanced
changeset 4:d747292c486f draft
Uploaded
| author | insilico-bob |
|---|---|
| date | Tue, 06 Nov 2018 16:30:12 -0500 |
| parents | 9359e0a0d40b |
| children | 15c71ed09efa |
| files | mda_advanced_heatmap_gen.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/mda_advanced_heatmap_gen.xml Mon Nov 05 11:23:57 2018 -0500 +++ b/mda_advanced_heatmap_gen.xml Tue Nov 06 16:30:12 2018 -0500 @@ -1,11 +1,11 @@ <?xml version="1.0" encoding="UTF-8" ?> -<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.5.3"> +<tool id="mda_advanced_heatmap_gen" name="Advanced NG-CHM Generator" version="2.3"> <requirements> - <requirement type="package" version="3.4.1">r-base</requirement> - <requirement type="package" version="1.8">java</requirement> + <requirement type="package" version="3.4.1">r-base</requirement> + <requirement type="package" version="8.0.144">openjdk</requirement> </requirements> <description> Create Clustered Heat Maps with Advanced Options</description> - <command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' +<command interpreter="bash" detect_errors="aggressive">$__tool_directory__/heatmap_advanced.sh 'advanced' 'Heat_Map_$hmname' '$hmdesc' '$inputmatrix' ${d_rows.rowOrderMethod} ${d_rows.rowDistanceMeasure} ${d_rows.rowAgglomerationMethod} ${d_cols.columnOrderMethod} ${d_cols.columnDistanceMeasure} ${d_cols.columnAgglomerationMethod} $summarymethod '$__tool_directory__;$__tool_data_path__' ${d_rows.rowDendroCut} ${d_cols.colDendroCut} $rowDataType $colDataType 'c_${d_rows.rcutrows.rowDendroTreeCut}' 'c_${d_cols.ccutrows.colDendroTreeCut}' 't_$rowTopItems' 't_$colTopItems' " #for $attr in $hm_attribute