Mercurial > repos > melpetera > batchcorrection
annotate build.xml @ 1:f64656ae9ea4 draft
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit b1f8bd1260c1c4b73600fb3867ca3bc613f258a7
author | melpetera |
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date | Sun, 09 Oct 2016 09:54:00 -0400 |
parents | 71d83d8920bf |
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rev | line source |
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71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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changeset
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1 <project name="batchcorrection" default="all"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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2 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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3 <property name="tool.xml" value="batch_correction.xml"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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4 <property name="conda.dir" value="${user.home}/w4m-conda"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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5 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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changeset
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6 <!--~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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7 ~ ALL ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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8 ~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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9 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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10 <target name="all"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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11 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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changeset
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12 <!--~~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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13 ~ TEST ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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14 ~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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15 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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16 <target name="test" depends="planemo.lint,planemo.test"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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17 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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18 <!--~~~~~~~~~~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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19 ~ PLANEMO LINT ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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20 ~~~~~~~~~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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21 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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22 <target name="planemo.lint"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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23 <exec executable="planemo" failonerror="true"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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24 <arg value="lint"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
|
25 <arg value="${tool.xml}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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26 </exec> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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27 </target> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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28 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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29 <!--~~~~~~~~~~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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30 ~ PLANEMO TEST ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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31 ~~~~~~~~~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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32 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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33 <target name="planemo.test" depends="planemo.conda.install"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
|
34 <exec executable="planemo" failonerror="true"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
|
35 <arg value="test"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
|
36 <arg value="--conda_prefix"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
|
37 <arg value="${conda.dir}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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38 <arg value="--galaxy_branch"/> |
1
f64656ae9ea4
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit b1f8bd1260c1c4b73600fb3867ca3bc613f258a7
melpetera
parents:
0
diff
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39 <arg value="release_16.07"/> |
0
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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40 <arg value="--conda_dependency_resolution"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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41 <arg value="${tool.xml}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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42 </exec> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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43 </target> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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44 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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45 <!--~~~~~~~~~~~~~~~~~~~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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46 ~ PLANEMO CONDA INSTALL ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
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47 ~~~~~~~~~~~~~~~~~~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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48 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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49 <target name="planemo.conda.install" depends="planemo.conda.init"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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50 <exec executable="planemo" failonerror="true"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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51 <arg value="conda_install"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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52 <arg value="--conda_prefix"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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53 <arg value="${conda.dir}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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54 <arg value="${tool.xml}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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55 </exec> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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56 </target> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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57 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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58 <!--~~~~~~~~~~~~~~~~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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59 ~ PLANEMO CONDA INIT ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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60 ~~~~~~~~~~~~~~~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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61 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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62 <target name="planemo.conda.init"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
|
63 <exec executable="planemo" failonerror="true"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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64 <arg value="conda_init"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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65 <arg value="--conda_prefix"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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66 <arg value="${conda.dir}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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67 </exec> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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68 </target> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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69 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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70 <!--~~~~~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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71 ~ CLEAN ~ |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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72 ~~~~~~--> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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73 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
changeset
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74 <target name="clean"> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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75 <delete dir="${conda.dir}"/> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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76 </target> |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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77 |
71d83d8920bf
planemo upload for repository https://github.com/workflow4metabolomics/batchcorrection.git commit de79117e6ab856420b87efca3675c7963688f975
melpetera
parents:
diff
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78 </project> |