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-Signal drift and batch-effect correction  
-========================================
-
-A Galaxy module from the [Workflow4metabolomics](http://workflow4metabolomics.org) infrastructure  
-
-Status: [![Build Status](https://travis-ci.org/workflow4metabolomics/batchcorrection.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/batchcorrection).
-
-### Description
-
-**Version:** 2.1.2  
-**Date:** 2017-04-30  
-**Author:** Jean-François Martin (INRA, AXIOM), Mélanie Pétéra (INRA, PFEM), Marion Landi (INRA, PFEM), Franck Giacomoni (INRA, PFEM), and Etienne A. Thévenot (CEA, LIST)  
-**Email:** [jean-francois.martin(at)toulouse.inra.fr](mailto:[e-mail]), [melanie.petera(at)clermont.inra.fr](mailto:[e-mail]), [etienne.thevenot(at)cea.fr](mailto:[e-mail])  
-**Citation:**  
-**Licence:** CeCILL  
-**Reference history:** [W4M00001_Sacurine-statistics; DOI:10.15454/1.4811121736910142E12](http://dx.doi.org/10.15454/1.4811121736910142E12) and [W4M00002_Sacurine-comprehensive; DOI:10.15454/1.481114233733302E12](http://dx.doi.org/10.15454/1.481114233733302E12)  
-**Funding:** Agence Nationale de la Recherche ([MetaboHUB](http://www.metabohub.fr/index.php?lang=en&Itemid=473) national infrastructure for metabolomics and fluxomics, ANR-11-INBS-0010 grant)  
-
-### Installation
-
-* Configuration files:
-    + `batch_correction.xml` (for the "Batch Correction" module)
-    + `determine_bc.xml` (for the "Determine Batch Correction" module)  
-* Image files: 
-    + `static/images/batch_correction.png`    
-    + `static/images/determine_batch_correction.png`  
-    + `static/images/pdf_plotsituation.png`    
-    + `static/images/Vdk_pdf1.png`    
-    + `static/images/Vdk_pdf2.png`        
-* Wrapper files:
-    + `batch_correction_wrapper.R`  
-    + `batch_correction_all_loess_wrapper.R`  
-* Script files:
-    + `Normalisation_QCpool.r`  
-     + `batch_correction_all_loess_script.R`  
-* R packages
-  + **batch** from CRAN  
-  
-    ```r
-    install.packages("batch", dep=TRUE)  
-    ```
-
-  + **ade4** from CRAN  
-  
-    ```r
-    install.packages("ade4", dep=TRUE)  
-    ```
-
- + **pcaMethods** from Bioconductor  
-  
-    ```r
-    source("http://www.bioconductor.org/biocLite.R")  
-    biocLite("pcaMethods")      
-    ```
-
- + **ropls** from Bioconductor  
-  
-    ```r
-    source("http://www.bioconductor.org/biocLite.R")  
-    biocLite("ropls")      
-    ```
-
-### Tests
-
-The code in the batch_correction_wrapper can be tested by running the `runit/batchcorrection_runtests.R` R file  
-
-You will need to install **RUnit** package in order to make it run:
-```r
-install.packages('RUnit', dependencies = TRUE)
-```
-
-### Working example  
-
-See the reference histories [W4M00001_Sacurine-statistics; DOI:10.15454/1.4811121736910142E12](http://dx.doi.org/10.15454/1.4811121736910142E12) and [W4M00002_Sacurine-comprehensive; DOI:10.15454/1.481114233733302E12](http://dx.doi.org/10.15454/1.481114233733302E12)  
- 
-
-### News
-
-##### CHANGES IN VERSION 2.1.2  
-
-INTERNAL MODIFICATIONS  
-
- * Minor modifications in config file  
-
-##### CHANGES IN VERSION 2.1.0  
-
-INTERNAL MODIFICATIONS  
-
- * For PCA figure display only ("all_loess_" options): missing values are set to the minimum value before PCA computation is performed (with svd)
- 
- * Additional running and installation tests added with planemo, conda, and travis  
-
- * Modification of the 'all_loess_wrapper.R' file to handle 'ropls' package versions of 1.3.15 and above (i.e. after switching to S4 classes) 
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