Mercurial > repos > melpetera > generic_filter
view GalFilter/test-generic_filter.sh @ 3:cfd7c4aa5c26 draft default tip
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author | melpetera |
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date | Fri, 03 Jan 2020 04:09:28 -0500 |
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#!/bin/bash # set path scriptdir=$(cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd) # run test Rscript $scriptdir/filter_wrap.R dataMatrix_in "$scriptdir/test-data/in_DM1.tabular" sampleMetadata_in "$scriptdir/test-data/in_SM1.tabular" variableMetadata_in "$scriptdir/test-data/in_VM1.tabular" Numeric "TRUE" num_file "variable" parm_col "rt" Interval "lower" low_value "1.2" Factors "TRUE" qual_file "sample" factor_col "Time" factors_value "3" dataMatrix_out "$scriptdir/out_DM1.tabular" sampleMetadata_out "$scriptdir/out_SM1.tabular" variableMetadata_out "$scriptdir/out_VM1.tabular" # test diff diff $scriptdir/out_DM1.tabular $scriptdir/test-data/out_DM1.tabular || exit 2 diff $scriptdir/out_SM1.tabular $scriptdir/test-data/out_SM1.tabular || exit 2 diff $scriptdir/out_VM1.tabular $scriptdir/test-data/out_VM1.tabular || exit 2