Mercurial > repos > melpetera > idchoice

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author melpetera
date Thu, 19 Dec 2019 05:29:57 -0500
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4 Metadata 4 Metadata
5 ----------- 5 -----------
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7 * **@name**: ID choice 7 * **@name**: ID choice
8 * **@version**: 17.11 8 * **@version**: 19.12
9 * **@authors**: Melanie Petera - PFEM ; INRA ; MetaboHUB 9 * **@authors**: Melanie Petera - PFEM ; INRA ; MetaboHUB
10 * **@init date**: 2017/06/07 10 * **@init date**: 2017/06/07
11 * **@main usage**: This tool is designed to make you choose a particular column in your metadata file to be considered as identifiers for your W4M-3-tables-format data. 11 * **@main usage**: This tool is designed to make you choose a particular column in your metadata file to be considered as identifiers for your W4M-3-tables-format data.
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14 Context 14 Context
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17 This tool is one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. 17 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance utilities. W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data.
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19 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. 19 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
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22 Configuration 22 Configuration
26 * R software: version > 3.0.0 recommended 26 * R software: version > 3.0.0 recommended
27 * Specific R library: 'batch' 27 * Specific R library: 'batch'
28 * Submodule: [easyRlibrary](https://github.com/workflow4metabolomics/easyrlibrary-lib) (Required for internal input quality checks) 28 * Submodule: [easyRlibrary](https://github.com/workflow4metabolomics/easyrlibrary-lib) (Required for internal input quality checks)
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30 ### Deploy: 30 ### Deploy:
31 * [get project data](https://github.com/workflow4metabolomics/idchoice)
32 * How to get the submodule files: 31 * How to get the submodule files:
33 When pulling this module's Git repository, you may only obtain an empty folder for the needed submodule. 32 When pulling this module's Git repository, you may only obtain an empty folder for the needed submodule.
34 You can initialise it then with the following command: 33 You can initialise it then with the following command:
35 ```bash 34 ```bash
36 git submodule update --init --recursive 35 git submodule update --init --recursive
37 ``` 36 ```
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40 Travis test
41 -----------
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43 [![Build Status](https://travis-ci.org/workflow4metabolomics/idchoice.svg?branch=master)](https://travis-ci.org/workflow4metabolomics/idchoice)
44 Test and Deploy with Confidence. Easily sync your GitHub projects with Travis CI and you'll be testing your code in minutes!
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47 Technical description 39 Technical description
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57 Services provided 49 Services provided
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60 * Help and support: support@workflow4metabolomics.org 52 * Help and support: support@workflow4metabolomics.org
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55 License
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58 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1)