Mercurial > repos > melpetera > idchoice
comparison IDchoice/IDchoice.xml @ 1:bb19b1d15732 draft default tip
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| author | melpetera |
|---|---|
| date | Thu, 19 Dec 2019 05:29:57 -0500 |
| parents | b7a6a88f518a |
| children |
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| 0:b7a6a88f518a | 1:bb19b1d15732 |
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| 1 <tool id="idchoice" name="ID choice" version="18.01"> | 1 <tool id="idchoice" name="ID choice" version="19.12"> |
| 2 <description>Choosing a particular column in your metadata to be considered as Identifiers</description> | 2 <description>Choosing a particular column in your metadata to be considered as Identifiers</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.1_4">r-batch</requirement> | 4 <requirement type="package" version="1.1_4">r-batch</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command interpreter="Rscript"> | 6 <command interpreter="Rscript"> |
| 104 | 104 |
| 105 Metadata file is meant to be chosen from sample metadata and variable metadata files. | 105 Metadata file is meant to be chosen from sample metadata and variable metadata files. |
| 106 | It should include a column containing your wanted IDs. | 106 | It should include a column containing your wanted IDs. |
| 107 | | 107 | |
| 108 | 108 |
| 109 ---------- | 109 ----------- |
| 110 Parameter | 110 Parameters |
| 111 ---------- | 111 ----------- |
| 112 | 112 |
| 113 Which ID do you want to change? | 113 Which ID do you want to change? |
| 114 | This must be consistant with the metadata file you chose as input | 114 | This must be consistant with the metadata file you chose as input |
| 115 | | 115 | |
| 116 | 116 |
| 122 | If no (default value), if your ID column does not contain unique values, it will stop the process and send you back an explicit error. | 122 | If no (default value), if your ID column does not contain unique values, it will stop the process and send you back an explicit error. |
| 123 | If yes, non-unique values will be converted by adding "_x" at the end of concerned IDs. | 123 | If yes, non-unique values will be converted by adding "_x" at the end of concerned IDs. |
| 124 | | 124 | |
| 125 | 125 |
| 126 | 126 |
| 127 ------------ | 127 ------------- |
| 128 Output file | 128 Output files |
| 129 ------------ | 129 ------------- |
| 130 | 130 |
| 131 ID_metadata | 131 ID_metadata |
| 132 | tabular output | 132 | tabular output |
| 133 | Corresponds to the input metadata file with new IDs as first column | 133 | Corresponds to the input metadata file with new IDs as first column |
| 134 | | 134 | |