Mercurial > repos > melpetera > intensity_checks
comparison README.md @ 7:00181e66c50f draft
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics commit 689ab2a3db06eeed6a190f3cfa1618b9d9b7b07b
| author | workflow4metabolomics |
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| date | Wed, 09 Jul 2025 15:43:29 +0000 |
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| 1 Intensity check | |
| 2 ======= | |
| 3 | |
| 4 Metadata | |
| 5 ----------- | |
| 6 | |
| 7 * **@name**: Intensity check | |
| 8 * **@version**: 2.0.0 | |
| 9 * **@authors**: Original code: Anthony Fernandes (PFEM - INRA) - Maintainer: Melanie Petera (PFEM - INRAE - MetaboHUB) | |
| 10 * **@contributors**: Wrapper update/refactoring: Helge Hecht | |
| 11 * **@init date**: 2018, September | |
| 12 * **@main usage**: This tool computes some statistical measures, number of missing values and mean fold change. | |
| 13 | |
| 14 | |
| 15 Context | |
| 16 ----------- | |
| 17 | |
| 18 This tool is provided as one of the [Workflow4Metabolomics](http://workflow4metabolomics.org) Galaxy instance statistical tools. | |
| 19 W4M is a French infrastructure providing software tools to process, analyse and annotate metabolomics data. | |
| 20 | |
| 21 User interface is based on the Galaxy platform (homepage: https://galaxyproject.org/). It is an open, web-based platform for data intensive biomedical research. | |
| 22 Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses. | |
| 23 | |
| 24 | |
| 25 Configuration | |
| 26 ----------- | |
| 27 | |
| 28 ### Requirement: | |
| 29 * R software: version > 3.0.0 recommended | |
| 30 * Specific R libraries: 'argparse' (for the Galaxy wrapper only) | |
| 31 | |
| 32 | |
| 33 Technical description | |
| 34 ----------- | |
| 35 | |
| 36 Main files: | |
| 37 | |
| 38 - Script_intensity_check.R: R function (core script) | |
| 39 - wrapper_intensity_check.R: R script to link the main R function to inputs | |
| 40 - xml_intensity_check.xml: XML wrapper (interface for Galaxy) | |
| 41 | |
| 42 | |
| 43 Services provided | |
| 44 ----------- | |
| 45 | |
| 46 * Help and support: https://community.france-bioinformatique.fr/c/workflow4metabolomics/10 | |
| 47 | |
| 48 | |
| 49 License | |
| 50 ----------- | |
| 51 | |
| 52 * Cea Cnrs Inria Logiciel Libre License, version 2.1 (CECILL-2.1) |