comparison build/tools/SbmlCheckBalance/SbmlCheckBalance.xml @ 9:0976a6257300 draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit 05db35f63cadb9d56dafff594a3507c59cd85273

8:1274e2a62479

<?xml version="1.0" encoding="UTF-8"?>
<tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="1.5.0">
  <description>Check balance of all the reactions in a SBML.</description>
  <xrefs>
    <xref type="bio.tools">met4j</xref>
  </xrefs>
  <requirements>
    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.5.0</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -sbml "$sbml"
 -out "$out"
]]></command>
  <inputs>
    <param argument="-sbml" format="sbml" label="Original sbml file" name="sbml" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="tsv" name="out"/>
  </outputs>
  <tests/>

9:0976a6257300

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<tool id="met4j_SbmlCheckBalance" name="SbmlCheckBalance" version="develop">
  <description>Check balance of all the reactions in a SBML.</description>
  <xrefs>
    <xref type="bio.tools">met4j</xref>
  </xrefs>
  <requirements>
    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:develop</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh reconstruction.SbmlCheckBalance -i "$sbml"
 -out "$out"
]]></command>
  <inputs>
    <param argument="-i" format="sbml" label="Input Sbml file" name="sbml" optional="false" type="data" value=""/>
  </inputs>
  <outputs>
    <data format="tsv" name="out"/>
  </outputs>
  <tests/>