comparison tools/attributes/SbmlSetGprsFromFile/SbmlSetGprsFromFile.xml @ 3:6bd9aad9626d draft

planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a078bf88575dac3d09462252eae92c24f34d0414

2:e69a78624877

<?xml version="1.0" encoding="UTF-8"?>
<tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="1.0.1">
  <description>Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way</description>
  <xrefs>
    <xref type="bio.tools">met4j</xref>
  </xrefs>
  <requirements>
    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.0.1</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetGprsFromFile#if str($colgpr) != 'nan':
 -cgpr "$colgpr"
#end if
#if str($colid) != 'nan':

3:6bd9aad9626d

<?xml version="1.0" encoding="UTF-8"?>
<tool id="met4j_SbmlSetGprsFromFile" name="SbmlSetGprsFromFile" version="1.1.0">
  <description>Create a new SBML file from an original sbml file and a tabulated file containing reaction ids and Gene association written in a cobra way</description>
  <xrefs>
    <xref type="bio.tools">met4j</xref>
  </xrefs>
  <requirements>
    <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.1.0</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh attributes.SbmlSetGprsFromFile#if str($colgpr) != 'nan':
 -cgpr "$colgpr"
#end if
#if str($colid) != 'nan':