Mercurial > repos > metexplore > met4j
comparison tools/networkAnalysis/ExtractSubReactionNetwork/ExtractSubReactionNetwork.xml @ 6:7a6f2380fc1d draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy
| author | metexplore |
|---|---|
| date | Wed, 17 May 2023 13:26:37 +0000 |
| parents | 35c9abcd8934 |
| children | 1274e2a62479 |
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| 5:35c9abcd8934 | 6:7a6f2380fc1d |
|---|---|
| 1 <?xml version="1.0" encoding="UTF-8"?> | 1 <?xml version="1.0" encoding="UTF-8"?> |
| 2 <tool id="met4j_ExtractSubReactionNetwork" name="ExtractSubReactionNetwork" version="1.2.1"> | 2 <tool id="met4j_ExtractSubReactionNetwork" name="ExtractSubReactionNetwork" version="MET4J_VERSION_TEST"> |
| 3 <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.</description> | 3 <description>Create a subnetwork from a GSMN in SBML format, and two files containing lists of reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.</description> |
| 4 <xrefs> | 4 <xrefs> |
| 5 <xref type="bio.tools">met4j</xref> | 5 <xref type="bio.tools">met4j</xref> |
| 6 </xrefs> | 6 </xrefs> |
| 7 <requirements> | 7 <requirements> |
| 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:1.2.1</container> | 8 <container type="singularity">oras://registry.forgemia.inra.fr/metexplore/met4j/met4j-singularity:MET4J_VERSION_TEST</container> |
| 9 </requirements> | 9 </requirements> |
| 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubReactionNetwork -i "$inputPath" | 10 <command detect_errors="exit_code"><![CDATA[sh /usr/bin/met4j.sh networkAnalysis.ExtractSubReactionNetwork -i "$inputPath" |
| 11 -s "$sourcePath" | 11 -s "$sourcePath" |
| 12 $undirected | 12 $undirected |
| 13 $asTable | 13 $asTable |