# HG changeset patch
# User metexplore
# Date 1769009331 0
# Node ID ab04fda7191ef0c0fea4b9f56677dc3c66acd84b
# Parent  0cb8a94dd328666bddce7866d09951e2a1f581cc
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170

diff -r 0cb8a94dd328 -r ab04fda7191e ExtractAnnotations.xml
--- a/ExtractAnnotations.xml	Tue Oct 28 14:20:05 2025 +0000
+++ b/ExtractAnnotations.xml	Wed Jan 21 15:28:51 2026 +0000
@@ -31,44 +31,7 @@
   <outputs>
     <data format="tsv" name="outputPath"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="inputPath" value="Human-GEM_pathways.xml"/>
-      <param name="export" value="METABOLITE"/>
-      <param name="db" value="metanetx.chemical"/>
-      <output ftype="tsv" name="outputPath">
-        <assert_contents>
-          <has_n_lines n="146"/>
-          <has_n_columns n="2"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="inputPath" value="Human-GEM_pathways.xml"/>
-      <param name="export" value="METABOLITE"/>
-      <param name="db" value="metanetx.chemical"/>
-      <param name="skip" value="true"/>
-      <output ftype="tsv" name="outputPath">
-        <assert_contents>
-          <has_n_lines n="145"/>
-          <has_n_columns n="2"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="inputPath" value="Human-GEM_pathways.xml"/>
-      <param name="export" value="METABOLITE"/>
-      <param name="db" value="metanetx.chemical"/>
-      <param name="skip" value="true"/>
-      <param name="uniq" value="true"/>
-      <output ftype="tsv" name="outputPath">
-        <assert_contents>
-          <has_n_lines n="111"/>
-          <has_n_columns n="2"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Extract databases' references from SBML annotations or notes. The references are exported as a tabulated file with one column with the SBML compound, reaction or gene identifiers, and one column with the corresponding database identifier.The name of the targeted database need to be provided under the same form than the one used in the notes field or the identifiers.org uri.
 @ATTRIBUTION@]]></help>
   <citations/>
diff -r 0cb8a94dd328 -r ab04fda7191e macros.xml
--- a/macros.xml	Tue Oct 28 14:20:05 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:28:51 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**