Mercurial > repos > metexplore > met4j_extractpathways
comparison ExtractPathways.xml @ 3:0e6f2202c787 draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:28:59 +0000 |
| parents | 03a77f9c808d |
| children |
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| 2:7aad6a36be94 | 3:0e6f2202c787 |
|---|---|
| 19 </param> | 19 </param> |
| 20 </inputs> | 20 </inputs> |
| 21 <outputs> | 21 <outputs> |
| 22 <data format="sbml" name="outputPath"/> | 22 <data format="sbml" name="outputPath"/> |
| 23 </outputs> | 23 </outputs> |
| 24 <tests> | 24 <tests/> |
| 25 <test> | |
| 26 <param name="inputPath" value="XF_network.sbml"/> | |
| 27 <param name="pathwayId" value="Citric_Acid_Cycle+Folate_Metabolism+toto"/> | |
| 28 <output ftype="sbml" name="outputPath"> | |
| 29 <assert_contents> | |
| 30 <is_valid_xml/> | |
| 31 <has_line_matching expression=".*<reaction.*" n="17"/> | |
| 32 <has_line_matching expression=".*groups:id=.*" n="2"/> | |
| 33 </assert_contents> | |
| 34 </output> | |
| 35 </test> | |
| 36 </tests> | |
| 37 <help><![CDATA[Extract pathway(s) from a SBML file and create a sub-network SBML file | 25 <help><![CDATA[Extract pathway(s) from a SBML file and create a sub-network SBML file |
| 38 @ATTRIBUTION@]]></help> | 26 @ATTRIBUTION@]]></help> |
| 39 <citations/> | 27 <citations/> |
| 40 </tool> | 28 </tool> |
