Mercurial > repos > metexplore > met4j_extractpathways

changeset 3:0e6f2202c787 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:28:59 +0000
parents 7aad6a36be94
children
files ExtractPathways.xml macros.xml
diffstat 2 files changed, 3 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/ExtractPathways.xml	Tue Oct 28 14:20:12 2025 +0000
+++ b/ExtractPathways.xml	Wed Jan 21 15:28:59 2026 +0000
@@ -21,19 +21,7 @@
   <outputs>
     <data format="sbml" name="outputPath"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="inputPath" value="XF_network.sbml"/>
-      <param name="pathwayId" value="Citric_Acid_Cycle+Folate_Metabolism+toto"/>
-      <output ftype="sbml" name="outputPath">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*&lt;reaction.*" n="17"/>
-          <has_line_matching expression=".*groups:id=.*" n="2"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Extract pathway(s) from a SBML file and create a sub-network SBML file
 @ATTRIBUTION@]]></help>
   <citations/>
--- a/macros.xml	Tue Oct 28 14:20:12 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:28:59 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**