# HG changeset patch # User metexplore # Date 1741880553 0 # Node ID 0cd276b871ade56f240540df64ed1cebbe94ab08 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e28ca123295d50b85ba872e5a4720fd72697ecc3 diff -r 000000000000 -r 0cd276b871ad ExtractSubNetwork.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ExtractSubNetwork.xml Thu Mar 13 15:42:33 2025 +0000 @@ -0,0 +1,84 @@ + + + Create a subnetwork from a metabolic network in SBML format, and two files containing lists of compounds of interests ids, one per row. + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 10.1093/bib/bbv115 + 10.1093/bioinformatics/bti116 + 10.1093/bioinformatics/btg217 + 10.1016/j.biosystems.2011.05.004 + 10.1093/nar/gki437 + 10.1093/bioinformatics/btu760 + 10.1016/j.jmb.2005.09.079 + + diff -r 000000000000 -r 0cd276b871ad macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Mar 13 15:42:33 2025 +0000 @@ -0,0 +1,20 @@ + + + + + met4j + + + + + + met4j + + + 2.0.1 + + \ No newline at end of file diff -r 000000000000 -r 0cd276b871ad test-data/seeds.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/seeds.txt Thu Mar 13 15:42:33 2025 +0000 @@ -0,0 +1,1 @@ +A \ No newline at end of file diff -r 000000000000 -r 0cd276b871ad test-data/targets.txt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/targets.txt Thu Mar 13 15:42:33 2025 +0000 @@ -0,0 +1,1 @@ +D \ No newline at end of file diff -r 000000000000 -r 0cd276b871ad test-data/toy_model.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/toy_model.xml Thu Mar 13 15:42:33 2025 +0000 @@ -0,0 +1,119 @@ + + + + + + + + + + + + + + + + + + + + +

SMILES: C[C@@H](C(=O)O)NC

+ + + + + + + InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file