# HG changeset patch
# User metexplore
# Date 1741880564 0
# Node ID 3f15c2b87e8c3b6cb4089f22dea0b45f2d4f09fd
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e28ca123295d50b85ba872e5a4720fd72697ecc3
diff -r 000000000000 -r 3f15c2b87e8c ExtractSubReactionNetwork.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/ExtractSubReactionNetwork.xml Thu Mar 13 15:42:44 2025 +0000
@@ -0,0 +1,74 @@
+
+
+ Create a subnetwork from a metabolic network in SBML format, and two files containing lists of reactions of interests ids, one per row, plus one file of the same format containing side compounds ids.
+
+ macros.xml
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff -r 000000000000 -r 3f15c2b87e8c macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Thu Mar 13 15:42:44 2025 +0000
@@ -0,0 +1,20 @@
+
+
+
+
+ met4j
+
+
+
+
+
+ met4j
+
+
+ 2.0.1
+
+
\ No newline at end of file
diff -r 000000000000 -r 3f15c2b87e8c test-data/seeds.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/seeds.txt Thu Mar 13 15:42:44 2025 +0000
@@ -0,0 +1,1 @@
+reac1
\ No newline at end of file
diff -r 000000000000 -r 3f15c2b87e8c test-data/sides.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sides.txt Thu Mar 13 15:42:44 2025 +0000
@@ -0,0 +1,14 @@
+// Copyright 2025 lcottret
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+// https://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
diff -r 000000000000 -r 3f15c2b87e8c test-data/targets.txt
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/targets.txt Thu Mar 13 15:42:44 2025 +0000
@@ -0,0 +1,1 @@
+reac4
\ No newline at end of file
diff -r 000000000000 -r 3f15c2b87e8c test-data/toy_model.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/toy_model.xml Thu Mar 13 15:42:44 2025 +0000
@@ -0,0 +1,119 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+