annotate GetBiggModelProteome.xml @ 3:ff17fec2c799 draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<tool id="met4j_GetBiggModelProteome" name="GetBiggModelProteome" version="@TOOL_VERSION@">
  <description>Get proteome in fasta format of a model present in the BIGG database</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="bio_tools"/>
  <expand macro="requirements"/>
  <command detect_errors="exit_code"><![CDATA[met4j bigg.GetBiggModelProteome -m "$modelId"
 -o "$outputFile"
]]></command>
  <inputs>
    <param argument="-m" label="[ex: iMM904] id of the BIGG model" name="modelId" optional="false" type="text" value="iMM904">
      <sanitizer invalid_char="_">
        <valid initial="string.printable"/>
      </sanitizer>
    </param>
  </inputs>
  <outputs>
    <data format="fasta" name="outputFile"/>
  </outputs>
  <tests/>
  <help><![CDATA[Get proteome in fasta format of a model present in the BIGG database
@ATTRIBUTION@]]></help>
  <citations>
    <citation type="doi">10.1093/nar/gkv1049</citation>
  </citations>
</tool>