# HG changeset patch # User metexplore # Date 1741880807 0 # Node ID d9790f6b04ba01216a491f4841571857c8afcde9 planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e28ca123295d50b85ba872e5a4720fd72697ecc3 diff -r 000000000000 -r d9790f6b04ba GetEntities.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GetEntities.xml Thu Mar 13 15:46:47 2025 +0000 @@ -0,0 +1,60 @@ + + + Parse a SBML file to return a list of entities composing the network: metabolites, reactions, genes and others. + + macros.xml + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r d9790f6b04ba macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Mar 13 15:46:47 2025 +0000 @@ -0,0 +1,20 @@ + + + + + met4j + + + + + + met4j + + + 2.0.1 + + \ No newline at end of file diff -r 000000000000 -r d9790f6b04ba test-data/Human-GEM_pathways.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Human-GEM_pathways.xml Thu Mar 13 15:46:47 2025 +0000 @@ -0,0 +1,7661 @@ + + + + + +

Genome-scale metabolic models are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. This is the latest version of Human-GEM, which is a genome-scale metabolic model of a generic human cell. The objective of Human-GEM is to serve as a community model for enabling integrative and mechanistic studies of human metabolism.

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kegg.compound: C00004

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hmdb: HMDB01487

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bigg.metabolite: nadh

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chebi: CHEBI:16908

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pubchem.compound: 928

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metanetx.chemical: MNXM10

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formula: C21H27N7O14P2

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charge: -2

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charge: -2

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formula: C6H12O6

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metanetx.chemical: MNXM167

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formula: C12H22O11

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formula: C6H12O6

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metanetx.chemical: MNXM44065

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formula: C7H14O7

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charge: -3

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bigg.metabolite: glyald

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chebi: CHEBI:5445

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inchi: InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2/t3-/m0/s1

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bigg.metabolite: sbt__D

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metanetx.chemical: MNXM469

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formula: C6H14O6

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charge: -2

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lipidmaps: LMST01040128

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kegg.compound: C00001

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metanetx.chemical: MNXM2

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formula: H2O

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kegg.compound: C00004

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bigg.metabolite: nadh

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chebi: CHEBI:16908

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pubchem.compound: 928

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metanetx.chemical: MNXM10

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formula: C21H27N7O14P2

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kegg.compound: C00031

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chebi: CHEBI:4167

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pubchem.compound: 5793

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metanetx.chemical: MNXM41 || MNXM99

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chebi: CHEBI:16908

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chebi: CHEBI:4167

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pubchem.compound: 5793

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metanetx.chemical: MNXM41 || MNXM99

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formula: C6H12O6

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kegg.compound: C05401

+

chebi: CHEBI:15754

+

pubchem.compound: 16048618

+

metanetx.chemical: MNXM2608

+

formula: C9H18O8

+ +
+ + + + + + + + + + + + + + +
+ + + +

lipidmaps: LMST01040128

+

kegg.compound: C00001

+

hmdb: HMDB02111

+

bigg.metabolite: h2o

+

chebi: CHEBI:15377

+

pubchem.compound: 962

+

metanetx.chemical: MNXM2

+

formula: H2O

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00104

+

bigg.metabolite: idp

+

chebi: CHEBI:17808

+

pubchem.compound: 6831

+

metanetx.chemical: MNXM495

+

formula: C10H11N4O11P2

+

charge: -3

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00003

+

hmdb: HMDB00902

+

bigg.metabolite: nad

+

chebi: CHEBI:15846

+

pubchem.compound: 5893

+

metanetx.chemical: MNXM8

+

formula: C21H26N7O14P2

+

charge: -1

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00035

+

hmdb: HMDB01201

+

bigg.metabolite: gdp

+

chebi: CHEBI:17552

+

pubchem.compound: 8977

+

metanetx.chemical: MNXM30

+

formula: C10H12N5O11P2

+

charge: -3

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00275

+

bigg.metabolite: man6p

+

chebi: CHEBI:17369

+

pubchem.compound: 65127

+

metanetx.chemical: MNXM427

+

formula: C6H11O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C05403

+

metanetx.chemical: MNXM36578

+

formula: C12H20O11

+ +
+ + + + + + + + + + + + +
+ + + +

kegg.compound: C01097

+

bigg.metabolite: tag1p__D

+

chebi: CHEBI:4251

+

pubchem.compound: 439396

+

metanetx.chemical: MNXM795 || MNXM164716

+

formula: C6H11O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00665

+

bigg.metabolite: f26bp

+

chebi: CHEBI:28602

+

pubchem.compound: 105021

+

metanetx.chemical: MNXM651

+

formula: C6H10O12P2

+

charge: -4

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00002

+

hmdb: HMDB00538

+

bigg.metabolite: atp

+

chebi: CHEBI:15422

+

pubchem.compound: 5957

+

metanetx.chemical: MNXM3

+

formula: C10H12N5O13P3

+

charge: -4

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00011

+

hmdb: HMDB01967

+

bigg.metabolite: co2

+

chebi: CHEBI:16526

+

inchi: InChI=1S/CO2/c2-1-3

+

pubchem.compound: 280

+

metanetx.chemical: MNXM13

+

formula: CO2

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00003

+

hmdb: HMDB00902

+

bigg.metabolite: nad

+

chebi: CHEBI:15846

+

pubchem.compound: 5893

+

metanetx.chemical: MNXM8

+

formula: C21H26N7O14P2

+

charge: -1

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00029

+

bigg.metabolite: udpg

+

chebi: CHEBI:18066

+

pubchem.compound: 53477679

+

metanetx.chemical: MNXM52

+

formula: C15H22N2O17P2

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00003

+

hmdb: HMDB00902

+

bigg.metabolite: nad

+

chebi: CHEBI:15846

+

pubchem.compound: 5893

+

metanetx.chemical: MNXM8

+

formula: C21H26N7O14P2

+

charge: -1

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00112

+

bigg.metabolite: cdp

+

chebi: CHEBI:17239

+

pubchem.compound: 6132

+

metanetx.chemical: MNXM220

+

formula: C9H12N3O11P2

+

charge: -3

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00011

+

hmdb: HMDB01967

+

bigg.metabolite: co2

+

chebi: CHEBI:16526

+

inchi: InChI=1S/CO2/c2-1-3

+

pubchem.compound: 280

+

metanetx.chemical: MNXM13

+

formula: CO2

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C01697

+

hmdb: HMDB00107

+

bigg.metabolite: galt

+

chebi: CHEBI:16813

+

inchi: InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4+,5+,6-

+

pubchem.compound: 11850

+

metanetx.chemical: MNXM1233

+

formula: C6H14O6

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00636

+

hmdb: HMDB06330

+

bigg.metabolite: man1p

+

chebi: CHEBI:35374

+

pubchem.compound: 644175

+

metanetx.chemical: MNXM721

+

formula: C6H11O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

bigg.metabolite: abt__D

+

inchi: InChI=1S/C5H12O5/c6-1-3(8)5(10)4(9)2-7/h3-10H,1-2H2/t3-,4-/m1/s1

+

metanetx.chemical: MNXM1018

+

formula: C5H12O5

+ +
+ + + + + + + + + + + + + +
+ + + +

kegg.compound: C03693

+

pubchem.compound: 3036654

+

metanetx.chemical: MNXM48557

+

formula: C6H10O12P2

+

charge: -4

+ +
+ + + + + + + + + + + + + +
+ + + +

kegg.compound: C00044

+

hmdb: HMDB01273

+

bigg.metabolite: gtp

+

chebi: CHEBI:15996

+

pubchem.compound: 6830

+

metanetx.chemical: MNXM51

+

formula: C10H12N5O14P3

+

charge: -4

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C03384

+

metanetx.chemical: MNXM336

+

formula: C6H11O9P

+

charge: -2

+ +
+ + + + + + + + + + + + +
+ + + +

kegg.compound: C00795

+

hmdb: HMDB03418

+

bigg.metabolite: tag__D

+

chebi: CHEBI:47693

+

pubchem.compound: 92092

+

metanetx.chemical: MNXM92401

+

formula: C6H12O6

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C01094

+

bigg.metabolite: f1p

+

chebi: CHEBI:18105

+

pubchem.compound: 10400369

+

metanetx.chemical: MNXM145568

+

formula: C6H11O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00096

+

bigg.metabolite: gdpmann

+

chebi: CHEBI:15820

+

pubchem.compound: 18396

+

metanetx.chemical: MNXM82

+

formula: C16H23N5O16P2

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00199

+

bigg.metabolite: ru5p__D

+

chebi: CHEBI:17363

+

pubchem.compound: 439184

+

metanetx.chemical: MNXM145 || MNXM186

+

formula: C5H9O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00279

+

bigg.metabolite: e4p

+

chebi: CHEBI:48153

+

pubchem.compound: 122357

+

metanetx.chemical: MNXM258

+

formula: C4H7O7P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00231

+

bigg.metabolite: xu5p__D

+

chebi: CHEBI:16332

+

pubchem.compound: 439190

+

metanetx.chemical: MNXM186

+

formula: C5H9O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00119

+

bigg.metabolite: prpp

+

chebi: CHEBI:17111

+

pubchem.compound: 7339

+

metanetx.chemical: MNXM91

+

formula: C5H8O14P3

+

charge: -5

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00672

+

bigg.metabolite: 2dr1p

+

chebi: CHEBI:28542

+

pubchem.compound: 5460448

+

metanetx.chemical: MNXM789

+

formula: C5H9O7P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00052

+

hmdb: HMDB00302

+

bigg.metabolite: udpgal

+

chebi: CHEBI:67119

+

pubchem.compound: 18068

+

metanetx.chemical: MNXM89795

+

formula: C15H22N2O17P2

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C03785

+

chebi: CHEBI:4250

+

pubchem.compound: 440117

+

metanetx.chemical: MNXM1324 || MNXM164715

+

formula: C6H10O12P2

+

charge: -4

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00052

+

hmdb: HMDB00302

+

bigg.metabolite: udpgal

+

chebi: CHEBI:67119

+

pubchem.compound: 18068

+

metanetx.chemical: MNXM89795

+

formula: C15H22N2O17P2

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00199

+

bigg.metabolite: ru5p__D

+

chebi: CHEBI:17363

+

pubchem.compound: 439184

+

metanetx.chemical: MNXM145 || MNXM186

+

formula: C5H9O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C01721

+

chebi: CHEBI:17617

+

pubchem.compound: 6857362

+

metanetx.chemical: MNXM1748

+

formula: C6H12O5

+ +
+ + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00159

+

hmdb: HMDB00169

+

bigg.metabolite: man

+

chebi: CHEBI:4208

+

pubchem.compound: 18950

+

metanetx.chemical: MNXM182

+

formula: C6H12O6

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C05394

+

chebi: CHEBI:27453

+

pubchem.compound: 440653

+

metanetx.chemical: MNXM4339

+

formula: C6H10O6

+ +
+ + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00312

+

hmdb: HMDB00751

+

bigg.metabolite: xylu__L

+

chebi: CHEBI:17399

+

inchi: InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h3,5-8,10H,1-2H2/t3-,5+/m0/s1

+

pubchem.compound: 22253

+

metanetx.chemical: MNXM597

+

formula: C5H10O5

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00984

+

hmdb: HMDB00143

+

bigg.metabolite: gal

+

chebi: CHEBI:28061

+

pubchem.compound: 439357

+

metanetx.chemical: MNXM112 || MNXM390

+

formula: C6H12O6

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00079

+

hmdb: HMDB00159

+

bigg.metabolite: phe__L

+

chebi: CHEBI:17295

+

pubchem.compound: 6140

+

metanetx.chemical: MNXM97

+

formula: C9H11NO2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00117

+

bigg.metabolite: r5p

+

chebi: CHEBI:17797

+

pubchem.compound: 440101

+

metanetx.chemical: MNXM116 || MNXM15900

+

formula: C5H9O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00063

+

bigg.metabolite: ctp

+

chebi: CHEBI:17677

+

pubchem.compound: 6176

+

metanetx.chemical: MNXM63

+

formula: C9H12N3O14P3

+

charge: -4

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00325

+

bigg.metabolite: gdpfuc

+

chebi: CHEBI:17009

+

pubchem.compound: 439211

+

metanetx.chemical: MNXM193

+

formula: C16H23N5O15P2

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00037

+

hmdb: HMDB00123

+

bigg.metabolite: gly

+

chebi: CHEBI:15428

+

inchi: InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)

+

pubchem.compound: 750

+

metanetx.chemical: MNXM29

+

formula: C2H5NO2

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00015

+

hmdb: HMDB00295

+

bigg.metabolite: udp

+

chebi: CHEBI:17659

+

pubchem.compound: 6031

+

metanetx.chemical: MNXM17

+

formula: C9H11N2O12P2

+

charge: -3

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00984

+

hmdb: HMDB00143

+

bigg.metabolite: gal

+

chebi: CHEBI:28061

+

pubchem.compound: 439357

+

metanetx.chemical: MNXM112 || MNXM390

+

formula: C6H12O6

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00243

+

hmdb: HMDB00186

+

bigg.metabolite: lcts

+

chebi: CHEBI:36219

+

pubchem.compound: 84571

+

metanetx.chemical: MNXM362

+

formula: C12H22O11

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C01019

+

hmdb: HMDB00174

+

bigg.metabolite: fuc__L

+

chebi: CHEBI:2181

+

pubchem.compound: 17106

+

metanetx.chemical: MNXM40586 || MNXM659

+

formula: C6H12O5

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00015

+

hmdb: HMDB00295

+

bigg.metabolite: udp

+

chebi: CHEBI:17659

+

pubchem.compound: 6031

+

metanetx.chemical: MNXM17

+

formula: C9H11N2O12P2

+

charge: -3

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00984

+

hmdb: HMDB00143

+

bigg.metabolite: gal

+

chebi: CHEBI:28061

+

pubchem.compound: 439357

+

metanetx.chemical: MNXM112 || MNXM390

+

formula: C6H12O6

+ +
+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00117

+

bigg.metabolite: r5p

+

chebi: CHEBI:17797

+

pubchem.compound: 440101

+

metanetx.chemical: MNXM116 || MNXM15900

+

formula: C5H9O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00243

+

hmdb: HMDB00186

+

bigg.metabolite: lcts

+

chebi: CHEBI:36219

+

pubchem.compound: 84571

+

metanetx.chemical: MNXM362

+

formula: C12H22O11

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C02985

+

bigg.metabolite: fuc1p__L

+

chebi: CHEBI:28319

+

pubchem.compound: 439871

+

metanetx.chemical: MNXM1727

+

formula: C6H11O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00243

+

hmdb: HMDB00186

+

bigg.metabolite: lcts

+

chebi: CHEBI:36219

+

pubchem.compound: 84571

+

metanetx.chemical: MNXM362

+

formula: C12H22O11

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00009

+

bigg.metabolite: pi

+

chebi: CHEBI:18367

+

pubchem.compound: 1004

+

metanetx.chemical: MNXM9

+

formula: HO4P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C05382

+

bigg.metabolite: s7p

+

chebi: CHEBI:15721

+

pubchem.compound: 22833559

+

metanetx.chemical: MNXM271

+

formula: C7H13O10P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00620

+

bigg.metabolite: r1p

+

chebi: CHEBI:35425

+

pubchem.compound: 439236

+

metanetx.chemical: MNXM295

+

formula: C5H9O8P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C01236

+

bigg.metabolite: 6pgl

+

chebi: CHEBI:16938

+

pubchem.compound: 439452

+

metanetx.chemical: MNXM429

+

formula: C6H9O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C02336

+

hmdb: HMDB00660

+

bigg.metabolite: fru

+

chebi: CHEBI:28645

+

pubchem.compound: 439709

+

metanetx.chemical: MNXM175

+

formula: C6H12O6

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00013

+

hmdb: HMDB00250

+

bigg.metabolite: ppi

+

chebi: CHEBI:18361

+

pubchem.compound: 644102

+

metanetx.chemical: MNXM11

+

formula: HO7P2

+

charge: -3

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00111

+

bigg.metabolite: dhap

+

chebi: CHEBI:16108

+

pubchem.compound: 668

+

metanetx.chemical: MNXM77

+

formula: C3H5O6P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C03384

+

bigg.metabolite: gal1p

+

chebi: CHEBI:17973

+

pubchem.compound: 123912

+

metanetx.chemical: MNXM336

+

formula: C6H11O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00020

+

hmdb: HMDB00045

+

bigg.metabolite: amp

+

chebi: CHEBI:16027

+

pubchem.compound: 6083

+

metanetx.chemical: MNXM14

+

formula: C10H12N5O7P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00084

+

hmdb: HMDB00990

+

bigg.metabolite: acald

+

chebi: CHEBI:15343

+

pubchem.compound: 177

+

metanetx.chemical: MNXM75

+

formula: C2H4O

+ +
+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C01236

+

bigg.metabolite: 6pgl

+

chebi: CHEBI:16938

+

pubchem.compound: 439452

+

metanetx.chemical: MNXM429

+

formula: C6H9O9P

+

charge: -2

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00081

+

bigg.metabolite: itp

+

chebi: CHEBI:16039

+

pubchem.compound: 8583

+

metanetx.chemical: MNXM423

+

formula: C10H11N4O14P3

+

charge: -4

+ +
+ + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C02336

+

hmdb: HMDB00660

+

bigg.metabolite: fru

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chebi: CHEBI:28645

+

pubchem.compound: 439709

+

metanetx.chemical: MNXM175

+

formula: C6H12O6

+ +
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+ + + +

kegg.compound: C00080

+

bigg.metabolite: h

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chebi: CHEBI:24636

+

pubchem.compound: 1038

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metanetx.chemical: MNXM1

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formula: H

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charge: 1

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+ + + +

kegg.compound: C00447

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chebi: CHEBI:17969

+

pubchem.compound: 164735

+

metanetx.chemical: MNXM163895 || MNXM1294

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formula: C7H12O13P2

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charge: -4

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+ + + +

kegg.compound: C00345

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hmdb: HMDB01316

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bigg.metabolite: 6pgc

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chebi: CHEBI:48928

+

pubchem.compound: 91493

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metanetx.chemical: MNXM325

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formula: C6H10O10P

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charge: -3

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+ + + +

kegg.compound: C00121

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hmdb: HMDB00283

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bigg.metabolite: rib__D

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chebi: CHEBI:16988

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pubchem.compound: 5779

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metanetx.chemical: MNXM242

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formula: C5H10O5

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+ + + +

kegg.compound: C00092

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bigg.metabolite: g6p

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chebi: CHEBI:4170

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pubchem.compound: 5958

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metanetx.chemical: MNXM160

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formula: C6H11O9P

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charge: -2

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kegg.compound: C00080

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bigg.metabolite: h

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chebi: CHEBI:24636

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pubchem.compound: 1038

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metanetx.chemical: MNXM1

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formula: H

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charge: 1

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+ + + +

kegg.compound: C00092

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bigg.metabolite: g6p

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chebi: CHEBI:4170

+

pubchem.compound: 5958

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metanetx.chemical: MNXM160

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formula: C6H11O9P

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charge: -2

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+ + + +

kegg.compound: C00345

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hmdb: HMDB01316

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bigg.metabolite: 6pgc

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chebi: CHEBI:48928

+

pubchem.compound: 91493

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metanetx.chemical: MNXM325

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formula: C6H10O10P

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charge: -3

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+ + + +

kegg.compound: C00080

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bigg.metabolite: h

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chebi: CHEBI:24636

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pubchem.compound: 1038

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metanetx.chemical: MNXM1

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formula: H

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charge: 1

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+ + + +

kegg.compound: C00080

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bigg.metabolite: h

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chebi: CHEBI:24636

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pubchem.compound: 1038

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metanetx.chemical: MNXM1

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formula: H

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charge: 1

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+ + + +

kegg.compound: C00118

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bigg.metabolite: g3p

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chebi: CHEBI:29052

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pubchem.compound: 729

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metanetx.chemical: MNXM74

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formula: C3H5O6P

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charge: -2

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+ + + +

kegg.compound: C00005

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hmdb: HMDB00221

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bigg.metabolite: nadph

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chebi: CHEBI:16474

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pubchem.compound: 22833512

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metanetx.chemical: MNXM6

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formula: C21H26N7O17P3

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charge: -4

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+ + + +

kegg.compound: C00103

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bigg.metabolite: g1p

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chebi: CHEBI:16077

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pubchem.compound: 65533

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metanetx.chemical: MNXM89588

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formula: C6H11O9P

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charge: -2

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+ + + +

kegg.compound: C01801

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hmdb: HMDB03224

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bigg.metabolite: drib

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chebi: CHEBI:28816

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pubchem.compound: 22833604

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metanetx.chemical: MNXM90412 || MNXM2474

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formula: C5H10O4

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+ + + +

kegg.compound: C00005

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hmdb: HMDB00221

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bigg.metabolite: nadph

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chebi: CHEBI:16474

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pubchem.compound: 22833512

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metanetx.chemical: MNXM6

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formula: C21H26N7O17P3

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charge: -4

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+ + + +

kegg.compound: C00116

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hmdb: HMDB00131

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bigg.metabolite: glyc

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chebi: CHEBI:17522

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pubchem.compound: 753

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metanetx.chemical: MNXM89612

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formula: C3H8O3

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+ + + +

kegg.compound: C00006

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hmdb: HMDB00217

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bigg.metabolite: nadp

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chebi: CHEBI:18009

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pubchem.compound: 5886

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metanetx.chemical: MNXM5

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formula: C21H25N7O17P3

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charge: -3

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+ + + +

kegg.compound: C00474

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hmdb: HMDB00508

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bigg.metabolite: rbt

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chebi: CHEBI:15963

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pubchem.compound: 827

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metanetx.chemical: MNXM1820

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formula: C5H12O5

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+ + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00085

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bigg.metabolite: f6p

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chebi: CHEBI:15946

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pubchem.compound: 69507

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metanetx.chemical: MNXM89621 || MNXM162235

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formula: C6H11O9P

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charge: -2

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+ + + +

lipidmaps: LMST01040128

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kegg.compound: C00001

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hmdb: HMDB02111

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bigg.metabolite: h2o

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chebi: CHEBI:15377

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pubchem.compound: 962

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metanetx.chemical: MNXM2

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formula: H2O

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+ + + + + + + + + + + + + + + + + +
+ + + +

kegg.compound: C00075

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hmdb: HMDB00285

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bigg.metabolite: utp

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chebi: CHEBI:15713

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pubchem.compound: 6133

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metanetx.chemical: MNXM121

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formula: C9H11N2O15P3

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charge: -4

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+ + + +

kegg.compound: C06222

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chebi: CHEBI:9082

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metanetx.chemical: MNXM12925

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formula: C7H13O10P

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charge: -2

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+ + + +

kegg.compound: C00257

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hmdb: HMDB00625

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chebi: CHEBI:33198

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pubchem.compound: 10690

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metanetx.chemical: MNXM341

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formula: C6H11O7

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charge: -1

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+ + + +

lipidmaps: LMST01040128

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kegg.compound: C00001

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hmdb: HMDB02111

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bigg.metabolite: h2o

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chebi: CHEBI:15377

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pubchem.compound: 962

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metanetx.chemical: MNXM2

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formula: H2O

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+ + + +

kegg.compound: C00006

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hmdb: HMDB00217

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bigg.metabolite: nadp

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chebi: CHEBI:18009

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pubchem.compound: 5886

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metanetx.chemical: MNXM5

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formula: C21H25N7O17P3

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charge: -3

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+ + + +

kegg.compound: C00673

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bigg.metabolite: 2dr5p

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chebi: CHEBI:16132

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pubchem.compound: 45934311

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metanetx.chemical: MNXM2179

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formula: C5H9O7P

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charge: -2

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+ + + + + + + + + + + + + + + +
+
+ + + + + + + + + +

Confidence Level: 0

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ec-code: 1.1.99.13

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metanetx.reaction: MNXR107115

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kegg.reaction: R01680

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SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 1.1.99.13

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+ + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

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AUTHORS: PMID:3023765

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ec-code: 5.4.2.7

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metanetx.reaction: MNXR103116

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kegg.reaction: R02749

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SUBSYSTEM: Pentose phosphate pathway

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EC_NUMBER: 5.4.2.7

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pmids: 3023765

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GENE_ASSOCIATION: ( ENSG00000169299 ) OR ( ENSG00000180953 )

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:3109378;UNIPROT:P16278

+

ec-code: 3.2.1.23

+

metanetx.reaction: MNXR109113 || MNXR105374

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kegg.reaction: R04783

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SUBSYSTEM: Galactose metabolism

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EC_NUMBER: 3.2.1.23

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pmids: 3109378

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GENE_ASSOCIATION: ENSG00000115850 AND ENSG00000163521 AND ENSG00000170266 AND ENSG00000188167

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 1.1.1.14

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metanetx.reaction: MNXR104283

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kegg.reaction: R00875

+

SUBSYSTEM: Fructose and mannose metabolism

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EC_NUMBER: 1.1.1.14

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GENE_ASSOCIATION: ENSG00000140263

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+ + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 1.1.1.21

+

metanetx.reaction: MNXR104287

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kegg.reaction: R01787

+

SUBSYSTEM: Fructose and mannose metabolism

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EC_NUMBER: 1.1.1.21

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GENE_ASSOCIATION: ( ENSG00000085662 ) OR ( ENSG00000198074 )

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:2211634

+

ec-code: 2.7.1.-

+

metanetx.reaction: MNXR103725

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SUBSYSTEM: Fructose and mannose metabolism

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EC_NUMBER: 2.7.1.-

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pmids: 2211634

+

GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )

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+ + + +

Confidence Level: 0

+

ec-code: 2.7.1.-

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 2.7.1.-

+

GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:223665;PMID:4433565;PMID:4436332;PMID:6318818;PMID:6320876;PMID:8612650

+

ec-code: 2.7.7.9

+

metanetx.reaction: MNXR100022

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kegg.reaction: R00289

+

bigg.reaction: GALUi

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SUBSYSTEM: Galactose metabolism

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EC_NUMBER: 2.7.7.9

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pmids: 223665,4433565,4436332,6318818,6320876,8612650

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GENE_ASSOCIATION: ENSG00000169764

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:16906315;PMID:7061426;PMID:7150652;PMID:8717435

+

ec-code: 2.7.1.1

+

metanetx.reaction: MNXR100614

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kegg.reaction: R00760

+

bigg.reaction: HEX7

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SUBSYSTEM: Fructose and mannose metabolism

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EC_NUMBER: 2.7.1.1

+

pmids: 7061426,7150652,8717435,16906315

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GENE_ASSOCIATION: ( ENSG00000156510 ) OR ( ENSG00000156515 ) OR ( ENSG00000159399 ) OR ( ENSG00000160883 )

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID: 4382012, PMID: 13575411, Harpers illustrated Biochemistry (2009) 28th edition pages 174-183

+

ec-code: 5.1.3.1

+

bigg.reaction: RPEc

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SUBSYSTEM: Pentose phosphate pathway

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EC_NUMBER: 5.1.3.1

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pmids: 4382012,13575411

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GENE_ASSOCIATION: ENSG00000197713

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: most probable reaction. added during gap filling.

+

metanetx.reaction: MNXR100357

+

bigg.reaction: GLYPHEHYc

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SUBSYSTEM: Pentose phosphate pathway

+ +
+ + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 4.1.2.13

+

metanetx.reaction: MNXR99466

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bigg.reaction: FBP26

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SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 4.1.2.13

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GENE_ASSOCIATION: ( ENSG00000109107 ) OR ( ENSG00000136872 ) OR ( ENSG00000149925 ) OR ( ENSG00000285043 )

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 2.4.1.22

+

metanetx.reaction: MNXR105080

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kegg.reaction: R00503

+

bigg.reaction: UGALGTg

+

SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 2.4.1.22

+

GENE_ASSOCIATION: ( ENSG00000086062 ) OR ( ENSG00000117411 ) OR ( ENSG00000167531 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 2.7.1.3

+

metanetx.reaction: MNXR100938

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kegg.reaction: R02927

+

bigg.reaction: KHK3

+

SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 2.7.1.3

+

GENE_ASSOCIATION: ENSG00000138030

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:10085245

+

ec-code: 2.7.1.-

+

metanetx.reaction: MNXR103514

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 2.7.1.-

+

pmids: 10085245

+

GENE_ASSOCIATION: ( ENSG00000116199 ) OR ( ENSG00000141560 ) OR ( ENSG00000162408 ) OR ( ENSG00000167363 ) OR ( ENSG00000172456 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 1.1.1.21

+

metanetx.reaction: MNXR100012

+

kegg.reaction: R01095

+

bigg.reaction: GALSIDEtl

+

SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 1.1.1.21

+

GENE_ASSOCIATION: ( ENSG00000085662 ) OR ( ENSG00000198074 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 2.7.7.12

+

metanetx.reaction: MNXR100027

+

kegg.reaction: R00502

+

bigg.reaction: GALt2_2

+

SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 2.7.7.12

+

GENE_ASSOCIATION: ENSG00000213930

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 3.2.1.108

+

metanetx.reaction: MNXR101000

+

kegg.reaction: R06114

+

bigg.reaction: LACZly

+

SUBSYSTEM: Galactose metabolism

+

EC_NUMBER: 3.2.1.108

+

GENE_ASSOCIATION: ENSG00000115850

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:10410995;PMID:2428310;PMID:9603974

+

ec-code: 1.1.1.271

+

metanetx.reaction: MNXR100108 || MNXR105384

+

kegg.reaction: R05692

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 1.1.1.271

+

pmids: 2428310,9603974,10410995

+

GENE_ASSOCIATION: ENSG00000104522

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:8549825;UNIPROT:P37837

+

ec-code: 2.2.1.2

+

metanetx.reaction: MNXR104715

+

kegg.reaction: R08575

+

bigg.reaction: TALA

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 2.2.1.2

+

pmids: 8549825

+

GENE_ASSOCIATION: ENSG00000177156

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:15234337

+

ec-code: 1.2.1.5

+

metanetx.reaction: MNXR105388

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 1.2.1.5

+

pmids: 15234337

+

GENE_ASSOCIATION: ( ENSG00000006534 ) OR ( ENSG00000108602 ) OR ( ENSG00000132746 ) OR ( ENSG00000184254 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:5646162;PMID:6251080

+

ec-code: 2.7.7.30

+

metanetx.reaction: MNXR99061

+

kegg.reaction: R01951

+

bigg.reaction: F1PGT

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 2.7.7.30

+

pmids: 5646162,6251080

+

GENE_ASSOCIATION: ( ENSG00000116783 ) OR ( ENSG00000254685 ) OR ( ENSG00000259030 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:9537432

+

ec-code: 1.1.1.21

+

metanetx.reaction: MNXR103511

+

bigg.reaction: RE1342C

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 1.1.1.21

+

pmids: 9537432

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:12056818;PMID:12413479

+

ec-code: 2.7.1.52

+

metanetx.reaction: MNXR99595 || MNXR107992

+

kegg.reaction: R03161

+

bigg.reaction: FK

+

SUBSYSTEM: Fructose and mannose metabolism

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EC_NUMBER: 2.7.1.52

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pmids: 12056818,12413479

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GENE_ASSOCIATION: ENSG00000157353

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:4084320;PMID:4272358

+

ec-code: 2.7.1.11

+

metanetx.reaction: MNXR105338 || MNXR102510

+

kegg.reaction: R01843

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 2.7.1.11

+

pmids: 4084320,4272358

+

GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:457669;PMID:5050937

+

ec-code: 5.3.1.25

+

metanetx.reaction: MNXR99468 || MNXR107994

+

kegg.reaction: R03163

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 5.3.1.25

+

pmids: 457669,5050937

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:11945275

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ec-code: 2.7.1.11

+

metanetx.reaction: MNXR105339

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 2.7.1.11

+

pmids: 11945275

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GENE_ASSOCIATION: ( ENSG00000067057 ) OR ( ENSG00000141959 ) OR ( ENSG00000152556 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:191453;PMID:845161

+

ec-code: 5.1.3.2

+

metanetx.reaction: MNXR105057

+

kegg.reaction: R00291

+

bigg.reaction: UDPG4E

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Confidence Level: 0

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AUTHORS: PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792

+

ec-code: 1.1.1.44

+

metanetx.reaction: MNXR100389

+

kegg.reaction: R01528

+

bigg.reaction: GND

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 1.1.1.44

+

pmids: 1504088,2753047,3943305,6212636,7194116,7225115,7623792,12398160,15558954,16756494

+

GENE_ASSOCIATION: ENSG00000142657

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

ec-code: 2.7.1.3

+

metanetx.reaction: MNXR108451

+

kegg.reaction: R03819

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 2.7.1.3

+

GENE_ASSOCIATION: ENSG00000138030

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:4989681;PMID:9226884

+

ec-code: 4.1.2.4

+

metanetx.reaction: MNXR97787

+

kegg.reaction: R01066

+

bigg.reaction: DRPA

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 4.1.2.4

+

pmids: 4989681,9226884

+

GENE_ASSOCIATION: ENSG00000023697

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:14953458;PMID:3023765;PMID:5769188;PMID:8050998

+

ec-code: 5.4.2.2 || 5.4.2.7

+

metanetx.reaction: MNXR106810 || MNXR103115

+

kegg.reaction: R01057

+

bigg.reaction: PPM

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 5.4.2.2;5.4.2.7

+

pmids: 3023765,5769188,8050998,14953458

+

GENE_ASSOCIATION: ( ENSG00000079739 ) OR ( ENSG00000169299 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:2996495;PMID:7833921

+

ec-code: 2.7.1.3

+

metanetx.reaction: MNXR100936

+

kegg.reaction: R00866

+

bigg.reaction: KHK

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 2.7.1.3

+

pmids: 2996495,7833921

+

GENE_ASSOCIATION: ENSG00000138030

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:10978316

+

ec-code: 2.3.1.57

+

metanetx.reaction: MNXR100390

+

kegg.reaction: R01737

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 2.3.1.57

+

pmids: 10978316

+

GENE_ASSOCIATION: ( ENSG00000130066 ) OR ( ENSG00000141504 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:9893952

+

ec-code: 4.2.1.47

+

metanetx.reaction: MNXR100377

+

kegg.reaction: R00888

+

bigg.reaction: GMAND

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 4.2.1.47

+

pmids: 9893952

+

GENE_ASSOCIATION: ENSG00000112699

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:15234337;PMID:234468;PMID:2843500

+

ec-code: 5.1.3.1

+

metanetx.reaction: MNXR104083

+

kegg.reaction: R01529

+

bigg.reaction: RPE

+

SUBSYSTEM: Pentose phosphate pathway

+

EC_NUMBER: 5.1.3.1

+

pmids: 234468,2843500,15234337

+

GENE_ASSOCIATION: ( ENSG00000197713 ) OR ( ENSG00000235376 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ + + +

Confidence Level: 0

+

AUTHORS: PMID:5114731;PMID:5655259;PMID:6054986

+

ec-code: 4.1.2.13

+

metanetx.reaction: MNXR99460

+

kegg.reaction: R02568

+

bigg.reaction: FBA2

+

SUBSYSTEM: Fructose and mannose metabolism

+

EC_NUMBER: 4.1.2.13

+

pmids: 5114731,5655259,6054986

+

GENE_ASSOCIATION: ( ENSG00000109107 ) OR ( ENSG00000136872 ) OR ( ENSG00000149925 ) OR ( ENSG00000285043 )

+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+
+
+