Mercurial > repos > metexplore > met4j_getreactantsfromreactions
changeset 3:a1898964de96 draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:30:11 +0000 |
| parents | 519a96f80d17 |
| children | |
| files | GetReactantsFromReactions.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 36 deletions(-) [+] |
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--- a/GetReactantsFromReactions.xml Fri Nov 21 10:20:42 2025 +0000 +++ b/GetReactantsFromReactions.xml Wed Jan 21 15:30:11 2026 +0000 @@ -35,40 +35,7 @@ <outputs> <data format="tsv" name="outputFile"/> </outputs> - <tests> - <test> - <param name="sbml" value="XF_network.sbml"/> - <param name="reactionFile" value="XF_network_R_Seed.tab"/> - <output ftype="tsv" name="outputFile"> - <assert_contents> - <has_text_matching expression="R_GLUN" n="4"/> - <has_text_matching expression="R_ACGS" n="5"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="XF_network.sbml"/> - <param name="reactionFile" value="XF_network_R_Seed.tab"/> - <param name="printSubstrates" value="true"/> - <output ftype="tsv" name="outputFile"> - <assert_contents> - <has_text_matching expression="R_GLUN" n="2"/> - <has_text_matching expression="R_ACGS" n="5"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="XF_network.sbml"/> - <param name="reactionFile" value="XF_network_R_Seed.tab"/> - <param name="printProducts" value="true"/> - <output ftype="tsv" name="outputFile"> - <assert_contents> - <has_text_matching expression="R_GLUN" n="2"/> - <has_text_matching expression="R_ACGS" n="5"/> - </assert_contents> - </output> - </test> - </tests> + <tests/> <help><![CDATA[Get reactant lists from a list of reactions and a Sbml file. Output a tab-separated file with one row per reactant, reaction identifiers in first column, reactant identifiers in second column. It can provides substrates, products, or both (by default). In the case of reversible reactions, all reactants are considered as both substrates and products @ATTRIBUTION@]]></help> <citations/>
--- a/macros.xml Fri Nov 21 10:20:42 2025 +0000 +++ b/macros.xml Wed Jan 21 15:30:11 2026 +0000 @@ -3,7 +3,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.0">met4j</requirement> + <requirement type="package" version="2.2.1">met4j</requirement> <yield/> </requirements> </xml> @@ -12,7 +12,7 @@ <xref type="bio.tools">met4j</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">2.2.0</token> + <token name="@TOOL_VERSION@">2.2.1</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution**