Mercurial > repos > metexplore > met4j_namematcher

changeset 3:2aa74b67755f draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:30:51 +0000
parents eecf4a934d32
children
files NameMatcher.xml macros.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/NameMatcher.xml	Fri Nov 21 10:21:41 2025 +0000
+++ b/NameMatcher.xml	Wed Jan 21 15:30:51 2026 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <tool id="met4j_NameMatcher" name="NameMatcher" version="@TOOL_VERSION@">
-  <description>This tool runs edit-distance based fuzzy matching to perform near-similar name matching between a metabolic model and a list of chemical names in a dataset. A harmonization processing is performed on chemical names with substitutions of common patterns among synonyms, in order to create aliases on which classical fuzzy matching can be run efficiently.</description>
+  <description>From a list of compound names, find the best matching metabolites in a SBML model using fuzzy name matching on harmonized aliases.</description>
   <macros>
     <import>macros.xml</import>
   </macros>
--- a/macros.xml	Fri Nov 21 10:21:41 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:30:51 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**