# HG changeset patch
# User metexplore
# Date 1756138080 0
# Node ID e4fe3d5892dd07c5fef5eb117334b6fcae298126
# Parent  533e924a57f651ee8d1ad096c915f006e63bf465
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit 6bb33ff0ff022029543e5e5ace7d16418715aa1c

diff -r 533e924a57f6 -r e4fe3d5892dd Sbml2CompoundGraph.xml
--- a/Sbml2CompoundGraph.xml	Thu Mar 13 15:49:24 2025 +0000
+++ b/Sbml2CompoundGraph.xml	Mon Aug 25 16:08:00 2025 +0000
@@ -6,7 +6,7 @@
   </macros>
   <expand macro="bio_tools"/>
   <expand macro="requirements"/>
-  <command detect_errors="exit_code"><![CDATA[met4j fr.inrae.toulouse.metexplore.met4j_toolbox.convert.Sbml2CompoundGraph -i "$inputPath"
+  <command detect_errors="exit_code"><![CDATA[met4j convert.Sbml2CompoundGraph -i "$inputPath"
 #if str($inputSide) != 'None':
  -sc "$inputSide"
 #end if
@@ -49,7 +49,13 @@
     </param>
   </inputs>
   <outputs>
-    <data format="txt" name="output"/>
+    <data format="txt" name="output">
+      <change_format>
+        <when input="format" value="tab" format="tabular" />
+        <when input="format" value="json" format="json" />
+        <when input="format" value="matrix" format="csv" />
+      </change_format>
+    </data>
   </outputs>
   <tests>
     <test>
diff -r 533e924a57f6 -r e4fe3d5892dd macros.xml
--- a/macros.xml	Thu Mar 13 15:49:24 2025 +0000
+++ b/macros.xml	Mon Aug 25 16:08:00 2025 +0000
@@ -1,8 +1,9 @@
 <?xml version="1.0"?>
+<!-- This file has been automatically generated by the met4j app GenerateGalaxyFiles. Please don't edit manually. -->
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.0.1">met4j</requirement>
+            <requirement type="package" version="2.1.0">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -11,10 +12,10 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.0.1</token>
+    <token name="@TOOL_VERSION@">2.1.0</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**
 
-This Galaxy tool relies on the met4j toolkit which is dedicated to the structural analysis of metabolic networks (https://forgemia.inra.fr/metexplore/met4j)
+This Galaxy tool relies on the met4j toolkit which is dedicated to the structural analysis of metabolic networks (https://forge.inrae.fr/metexplore/met4j)
     ]]></token>
 </macros>
\ No newline at end of file