Mercurial > repos > metexplore > met4j_sbml2graph

changeset 3:c17685061077 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:31:41 +0000
parents 1a4b8947e680
children
files Sbml2Graph.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 38 deletions(-) [+]
line wrap: on
line diff
--- a/Sbml2Graph.xml	Fri Nov 21 10:22:29 2025 +0000
+++ b/Sbml2Graph.xml	Wed Jan 21 15:31:41 2026 +0000
@@ -26,47 +26,13 @@
       <option value="nodeList">nodeList</option>
       <option value="json">json</option>
       <option value="matrix">matrix</option>
+      <option value="jsonviz">jsonviz</option>
     </param>
   </inputs>
   <outputs>
     <data format="txt" name="output"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="inputPath" value="toy_model.xml"/>
-      <param name="format" value="gml"/>
-      <output name="output">
-        <assert_contents>
-          <has_line_matching expression=".*node.*" n="8"/>
-          <has_line_matching expression=".*edge.*" n="9"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="inputPath" value="toy_model.xml"/>
-      <param name="bipartite" value="true"/>
-      <param name="compound" value="false"/>
-      <param name="format" value="gml"/>
-      <output name="output">
-        <assert_contents>
-          <has_line_matching expression=".*node.*" n="15"/>
-          <has_line_matching expression=".*edge.*" n="17"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="inputPath" value="toy_model.xml"/>
-      <param name="reaction" value="true"/>
-      <param name="compound" value="false"/>
-      <param name="format" value="gml"/>
-      <output name="output">
-        <assert_contents>
-          <has_line_matching expression=".*node.*" n="7"/>
-          <has_line_matching expression=".*edge.*" n="8"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Create a graph representation of a SBML file content, and export it in graph file format.
 The graph can be either a compound graph, a reaction graph or a bipartite graph, and can be exported in gml or tabulated file format.
 @ATTRIBUTION@]]></help>
--- a/macros.xml	Fri Nov 21 10:22:29 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:31:41 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**