Mercurial > repos > metexplore > met4j_sbmlwizard

changeset 3:1a5a16b2aef7 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:32:06 +0000
parents d84e89621e5e
children
files SbmlWizard.xml macros.xml
diffstat 2 files changed, 3 insertions(+), 30 deletions(-) [+]
line wrap: on
line diff
--- a/SbmlWizard.xml	Fri Nov 21 10:22:51 2025 +0000
+++ b/SbmlWizard.xml	Wed Jan 21 15:32:06 2026 +0000
@@ -53,34 +53,7 @@
   <outputs>
     <data format="sbml" name="outputPath"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="inputPath" value="Human-GEM_pathways.xml"/>
-      <param name="removeIsolated" value="true"/>
-      <param name="removeNoFlux" value="true"/>
-      <param name="mergingStrat" value="by_id"/>
-      <param name="removeDuplicated" value="true"/>
-      <param name="exchangeCompToRemove" value="s"/>
-      <output ftype="sbml" name="outputPath">
-        <assert_contents>
-          <has_text text="&lt;/sbml&gt;"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="inputPath" value="XF_network.sbml"/>
-      <param name="removeIsolated" value="true"/>
-      <param name="removeNoFlux" value="true"/>
-      <param name="removeDuplicated" value="true"/>
-      <param name="inputSide" value="XF_network_C_Side.tab"/>
-      <param name="inputReactions" value="XF_network_R_Seed.tab"/>
-      <output ftype="sbml" name="outputPath">
-        <assert_contents>
-          <has_text text="&lt;/sbml&gt;"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[General SBML model processing including compound removal (such as side compounds or isolated compounds), reaction removal (ex. blocked or exchange reaction), and compartment merging
 @ATTRIBUTION@]]></help>
   <citations/>
--- a/macros.xml	Fri Nov 21 10:22:51 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:32:06 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**