Mercurial > repos > metexplore > met4j_scopenetwork

changeset 3:5af67f89f924 draft default tip

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planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:32:13 +0000
parents 75002f79706d
children
files ScopeNetwork.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 16 deletions(-) [+]
line wrap: on
line diff
--- a/ScopeNetwork.xml	Fri Nov 21 10:22:58 2025 +0000
+++ b/ScopeNetwork.xml	Wed Jan 21 15:32:13 2026 +0000
@@ -34,25 +34,13 @@
       <option value="nodeList">nodeList</option>
       <option value="json">json</option>
       <option value="matrix">matrix</option>
+      <option value="jsonviz">jsonviz</option>
     </param>
   </inputs>
   <outputs>
     <data format="txt" name="output"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="sbmlFilePath" value="toy_model.xml"/>
-      <param name="seedsFilePath" value="seeds.txt"/>
-      <param name="sideCompoundFile" value="sides.txt"/>
-      <param name="format" value="gml"/>
-      <output ftype="txt" name="output">
-        <assert_contents>
-          <has_line_matching expression=".*node.*" n="9"/>
-          <has_line_matching expression=".*edge.*" n="11"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Perform a network expansion from a set of compound seeds to create a scope network
 The scope of a set of compounds (seed) refer to the maximal metabolic network that can be extended from them,where the extension process consist of adding a reaction to the network if and only if all of its substrates are either a seed or a product of a previously added reaction
 @ATTRIBUTION@]]></help>
--- a/macros.xml	Fri Nov 21 10:22:58 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:32:13 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**