Mercurial > repos > metexplore > met4j_setcharges
changeset 3:d266101e0e48 draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:32:28 +0000 |
| parents | 8f767bc45914 |
| children | |
| files | SetCharges.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 63 deletions(-) [+] |
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--- a/SetCharges.xml Fri Nov 21 10:23:12 2025 +0000 +++ b/SetCharges.xml Wed Jan 21 15:32:28 2026 +0000 @@ -47,67 +47,7 @@ <outputs> <data format="sbml" name="out"/> </outputs> - <tests> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="charges.tsv"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*fbc:charge=.2.*" n="1"/> - <has_line_matching expression=".*fbc:charge=.-3.*" n="1"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="chargesWithComment.tsv"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*fbc:charge=.2.*" n="1" negate="true"/> - <has_line_matching expression=".*fbc:charge=.-3.*" n="1"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="charges.tsv"/> - <param name="nSkip" value="1"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*fbc:charge=.2.*" n="1" negate="true"/> - <has_line_matching expression=".*fbc:charge=.-3.*" n="1"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="charges.tsv"/> - <param name="ci" value="2"/> - <param name="cc" value="3"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*fbc:charge=.2.*" n="1"/> - <has_line_matching expression=".*fbc:charge=.-3.*" n="1"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="XF_network.sbml"/> - <param name="tab" value="chargesXF.tsv"/> - <param name="p" value="true"/> - <param name="s" value="true"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*fbc:charge=.-1000.*" n="3"/> - </assert_contents> - </output> - </test> - </tests> + <tests/> <help><![CDATA[Set charge to metabolites in a SBML file from a tabulated file containing the metabolite ids and the charges The charge must be a number. The ids must correspond between the tabulated file and the SBML file. If prefix or suffix is different in the SBML file, use the -p or the -s options.
--- a/macros.xml Fri Nov 21 10:23:12 2025 +0000 +++ b/macros.xml Wed Jan 21 15:32:28 2026 +0000 @@ -3,7 +3,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.0">met4j</requirement> + <requirement type="package" version="2.2.1">met4j</requirement> <yield/> </requirements> </xml> @@ -12,7 +12,7 @@ <xref type="bio.tools">met4j</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">2.2.0</token> + <token name="@TOOL_VERSION@">2.2.1</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution**