comparison SetChemicalFormulas.xml @ 3:b9d95baab679 draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170

2:c1a0a6d9766a

    </param>
  </inputs>
  <outputs>
    <data format="sbml" name="out"/>
  </outputs>
  <tests>
    <test>
      <param name="sbml" value="toy_model.xml"/>
      <param name="tab" value="formula.tsv"/>
      <output ftype="sbml" name="out">
        <assert_contents>
          <is_valid_xml/>
          <has_line_matching expression=".*CH6O6.*" n="2"/>
          <has_line_matching expression=".*CH12O4.*" n="2"/>
        </assert_contents>
      </output>
    </test>
    <test expect_failure="true">
      <param name="sbml" value="toy_model.xml"/>
      <param name="tab" value="formulaBad.tsv"/>
    </test>
  </tests>
  <help><![CDATA[Set Formula to network metabolites from a tabulated file containing the metabolite ids and the formulas
The ids must correspond between the tabulated file and the SBML file.
If prefix or suffix is different in the SBML file, use the -p or the -s options.
The formula will be written in the SBML file in two locations:+
- in the metabolite HTML notes (e.g. formula: C16H29O2)

3:b9d95baab679

    </param>
  </inputs>
  <outputs>
    <data format="sbml" name="out"/>
  </outputs>
  <tests/>
  <help><![CDATA[Set Formula to network metabolites from a tabulated file containing the metabolite ids and the formulas
The ids must correspond between the tabulated file and the SBML file.
If prefix or suffix is different in the SBML file, use the -p or the -s options.
The formula will be written in the SBML file in two locations:+
- in the metabolite HTML notes (e.g. formula: C16H29O2)