# HG changeset patch
# User metexplore
# Date 1769009576 0
# Node ID d80ba6cbcf39c093de7174910136795b9d1d7f4d
# Parent  c0fea71f04d341b0b225157082aeaacceb7ed8fb
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170

diff -r c0fea71f04d3 -r d80ba6cbcf39 SetIds.xml
--- a/SetIds.xml	Fri Nov 21 10:23:40 2025 +0000
+++ b/SetIds.xml	Wed Jan 21 15:32:56 2026 +0000
@@ -59,67 +59,7 @@
   <outputs>
     <data format="sbml" name="out"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="sbml" value="toy_model.xml"/>
-      <param name="tab" value="idMetabolites.tsv"/>
-      <param name="o" value="METABOLITE"/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*id=.metaboliteA.*" n="1"/>
-          <has_line_matching expression=".*id=.metaboliteB.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="sbml" value="toy_model.xml"/>
-      <param name="tab" value="idReactions.tsv"/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*id=.reaction1.*" n="1"/>
-          <has_line_matching expression=".*id=.reaction2.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="sbml" value="XF_network.sbml"/>
-      <param name="tab" value="idPathways.tsv"/>
-      <param name="o" value="PATHWAY"/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*groups:id=.CEB.*" n="1"/>
-          <has_line_matching expression=".*groups:id=.NSP.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="sbml" value="XF_network.sbml"/>
-      <param name="tab" value="idGenes.tsv"/>
-      <param name="o" value="GENE"/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*fbc:id=.G1.*" n="1"/>
-          <has_line_matching expression=".*fbc:id=.G2.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="sbml" value="XF_network.sbml"/>
-      <param name="tab" value="idCompartments.tsv"/>
-      <param name="o" value="COMPARTMENT"/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*id=.cytosol.*" n="1"/>
-          <has_line_matching expression=".*id=.extra.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Set new ids to network objects in a SBML file from a tabulated file containing the old ids and the new ids
 The ids must correspond between the tabulated file and the SBML file.
 If prefix or suffix is different in the SBML file, use the -p or the -s options.
diff -r c0fea71f04d3 -r d80ba6cbcf39 macros.xml
--- a/macros.xml	Fri Nov 21 10:23:40 2025 +0000
+++ b/macros.xml	Wed Jan 21 15:32:56 2026 +0000
@@ -3,7 +3,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="2.2.0">met4j</requirement>
+            <requirement type="package" version="2.2.1">met4j</requirement>
             <yield/>
         </requirements>
     </xml>
@@ -12,7 +12,7 @@
             <xref type="bio.tools">met4j</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.2.0</token>
+    <token name="@TOOL_VERSION@">2.2.1</token>
     <token name="@ATTRIBUTION@"><![CDATA[
 **Attribution**