comparison SetNames.xml @ 3:2b39e4dccb8b draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170

2:0c353826af4a

    </param>
  </inputs>
  <outputs>
    <data format="sbml" name="out"/>
  </outputs>
  <tests>
    <test>
      <param name="sbml" value="toy_model.xml"/>
      <param name="tab" value="namesMetabolites.tsv"/>
      <param name="o" value="METABOLITE"/>
      <output ftype="sbml" name="out">
        <assert_contents>
          <is_valid_xml/>
          <has_line_matching expression=".*metaboliteA.*" n="1"/>
          <has_line_matching expression=".*metaboliteB.*" n="1"/>
        </assert_contents>
      </output>
    </test>
    <test>
      <param name="sbml" value="toy_model.xml"/>
      <param name="tab" value="namesReactions.tsv"/>
      <output ftype="sbml" name="out">
        <assert_contents>
          <is_valid_xml/>
          <has_line_matching expression=".*reaction1.*" n="1"/>
          <has_line_matching expression=".*reaction2.*" n="1"/>
        </assert_contents>
      </output>
    </test>
    <test>
      <param name="sbml" value="XF_network.sbml"/>
      <param name="tab" value="namesPathways.tsv"/>
      <param name="o" value="PATHWAY"/>
      <output ftype="sbml" name="out">
        <assert_contents>
          <is_valid_xml/>
          <has_line_matching expression=".*groups:name=.CEB.*" n="1"/>
          <has_line_matching expression=".*groups:name=.NSP.*" n="1"/>
        </assert_contents>
      </output>
    </test>
    <test>
      <param name="sbml" value="XF_network.sbml"/>
      <param name="tab" value="namesGenes.tsv"/>
      <param name="o" value="GENE"/>
      <output ftype="sbml" name="out">
        <assert_contents>
          <is_valid_xml/>
          <has_line_matching expression=".*fbc:name=.G1.*" n="1"/>
          <has_line_matching expression=".*fbc:name=.G2.*" n="1"/>
        </assert_contents>
      </output>
    </test>
  </tests>
  <help><![CDATA[Set names to network objects in a SBML file from a tabulated file containing the object ids and the names
The ids must correspond between the tabulated file and the SBML file.
If prefix or suffix is different in the SBML file, use the -p or the -s options.
@ATTRIBUTION@]]></help>
  <citations/>

3:2b39e4dccb8b

    </param>
  </inputs>
  <outputs>
    <data format="sbml" name="out"/>
  </outputs>
  <tests/>
  <help><![CDATA[Set names to network objects in a SBML file from a tabulated file containing the object ids and the names
The ids must correspond between the tabulated file and the SBML file.
If prefix or suffix is different in the SBML file, use the -p or the -s options.
@ATTRIBUTION@]]></help>
  <citations/>