diff SetPathways.xml @ 3:f610e716950a draft default tip

planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
author metexplore
date Wed, 21 Jan 2026 15:33:13 +0000
parents 2d11c51ed536
children
line wrap: on
line diff
--- a/SetPathways.xml	Fri Nov 21 10:23:54 2025 +0000
+++ b/SetPathways.xml	Wed Jan 21 15:33:13 2026 +0000
@@ -53,35 +53,7 @@
   <outputs>
     <data format="sbml" name="out"/>
   </outputs>
-  <tests>
-    <test>
-      <param name="sbml" value="toy_model.xml"/>
-      <param name="tab" value="pathways.tsv"/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*groups:id=.*" n="3"/>
-          <has_line_matching expression=".*groups:id=.p1.*" n="1"/>
-          <has_line_matching expression=".*groups:id=.p2.*" n="1"/>
-          <has_line_matching expression=".*groups:id=.p3.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-    <test>
-      <param name="sbml" value="toy_model.xml"/>
-      <param name="tab" value="pathwaysOtherSep.tsv"/>
-      <param name="sep" value=" + "/>
-      <output ftype="sbml" name="out">
-        <assert_contents>
-          <is_valid_xml/>
-          <has_line_matching expression=".*groups:id=.*" n="3"/>
-          <has_line_matching expression=".*groups:id=.p1.*" n="1"/>
-          <has_line_matching expression=".*groups:id=.p2.*" n="1"/>
-          <has_line_matching expression=".*groups:id=.p3.*" n="1"/>
-        </assert_contents>
-      </output>
-    </test>
-  </tests>
+  <tests/>
   <help><![CDATA[Set pathway to reactions in a network from a tabulated file containing the reaction ids and the pathways
 The ids must correspond between the tabulated file and the SBML file.
 If prefix R_ is present in the ids in the SBML file and not in the tabulated file, use the -p option.