Mercurial > repos > metexplore > met4j_setpathways
changeset 3:f610e716950a draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:33:13 +0000 |
| parents | b76767e37412 |
| children | |
| files | SetPathways.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 31 deletions(-) [+] |
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--- a/SetPathways.xml Fri Nov 21 10:23:54 2025 +0000 +++ b/SetPathways.xml Wed Jan 21 15:33:13 2026 +0000 @@ -53,35 +53,7 @@ <outputs> <data format="sbml" name="out"/> </outputs> - <tests> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="pathways.tsv"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*groups:id=.*" n="3"/> - <has_line_matching expression=".*groups:id=.p1.*" n="1"/> - <has_line_matching expression=".*groups:id=.p2.*" n="1"/> - <has_line_matching expression=".*groups:id=.p3.*" n="1"/> - </assert_contents> - </output> - </test> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="pathwaysOtherSep.tsv"/> - <param name="sep" value=" + "/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*groups:id=.*" n="3"/> - <has_line_matching expression=".*groups:id=.p1.*" n="1"/> - <has_line_matching expression=".*groups:id=.p2.*" n="1"/> - <has_line_matching expression=".*groups:id=.p3.*" n="1"/> - </assert_contents> - </output> - </test> - </tests> + <tests/> <help><![CDATA[Set pathway to reactions in a network from a tabulated file containing the reaction ids and the pathways The ids must correspond between the tabulated file and the SBML file. If prefix R_ is present in the ids in the SBML file and not in the tabulated file, use the -p option.
--- a/macros.xml Fri Nov 21 10:23:54 2025 +0000 +++ b/macros.xml Wed Jan 21 15:33:13 2026 +0000 @@ -3,7 +3,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.0">met4j</requirement> + <requirement type="package" version="2.2.1">met4j</requirement> <yield/> </requirements> </xml> @@ -12,7 +12,7 @@ <xref type="bio.tools">met4j</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">2.2.0</token> + <token name="@TOOL_VERSION@">2.2.1</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution**