Mercurial > repos > metexplore > met4j_setreferences
changeset 3:c7b3d0782d84 draft default tip
planemo upload for repository https://forge.inrae.fr/metexplore/met4j-galaxy commit e757d0398a8407d983f1ef3f900b31cafc26e170
| author | metexplore |
|---|---|
| date | Wed, 21 Jan 2026 15:33:19 +0000 |
| parents | b2c2b2b7349f |
| children | |
| files | SetReferences.xml macros.xml |
| diffstat | 2 files changed, 3 insertions(+), 17 deletions(-) [+] |
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--- a/SetReferences.xml Fri Nov 21 10:24:00 2025 +0000 +++ b/SetReferences.xml Wed Jan 21 15:33:19 2026 +0000 @@ -65,21 +65,7 @@ <outputs> <data format="sbml" name="out"/> </outputs> - <tests> - <test> - <param name="sbml" value="toy_model.xml"/> - <param name="tab" value="refs.tsv"/> - <param name="ref" value="InChi"/> - <param name="o" value="METABOLITE"/> - <output ftype="sbml" name="out"> - <assert_contents> - <is_valid_xml/> - <has_line_matching expression=".*C2H6O.*" n="3"/> - <has_line_matching expression=".*C6H8O6.*" n="1"/> - </assert_contents> - </output> - </test> - </tests> + <tests/> <help><![CDATA[Add references to network objects in a SBML file from a tabulated file containing the metabolite ids and the references Reference name given as parameter (-ref) must correspond to an existing id in the registry of identifiers.org (https://registry.identifiers.org/registry) The corresponding key:value pair will be written as metabolite or reaction MIRIAM annotation (see https://pubmed.ncbi.nlm.nih.gov/16333295/)
--- a/macros.xml Fri Nov 21 10:24:00 2025 +0000 +++ b/macros.xml Wed Jan 21 15:33:19 2026 +0000 @@ -3,7 +3,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.2.0">met4j</requirement> + <requirement type="package" version="2.2.1">met4j</requirement> <yield/> </requirements> </xml> @@ -12,7 +12,7 @@ <xref type="bio.tools">met4j</xref> </xrefs> </xml> - <token name="@TOOL_VERSION@">2.2.0</token> + <token name="@TOOL_VERSION@">2.2.1</token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution**