Mercurial > repos > metexplore > met4j_topologicalpathwayanalysis
changeset 0:7995de215935 draft
planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit e28ca123295d50b85ba872e5a4720fd72697ecc3
| author | metexplore |
|---|---|
| date | Thu, 13 Mar 2025 15:52:59 +0000 |
| parents | |
| children | 361998830a96 |
| files | TopologicalPathwayAnalysis.xml macros.xml test-data/XF_network.sbml test-data/XF_network_C_NOI.txt test-data/XF_network_C_Side.tab |
| diffstat | 5 files changed, 47370 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/TopologicalPathwayAnalysis.xml Thu Mar 13 15:52:59 2025 +0000 @@ -0,0 +1,74 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?> +<tool id="met4j_TopologicalPathwayAnalysis" name="TopologicalPathwayAnalysis" version="@TOOL_VERSION@"> + <description>Run a Topological Pathway Analysis (TPA) to identify key pathways based on topological properties of its constituting compounds.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="bio_tools"/> + <expand macro="requirements"/> + <command detect_errors="exit_code"><![CDATA[met4j fr.inrae.toulouse.metexplore.met4j_toolbox.networkAnalysis.TopologicalPathwayAnalysis -i "$inputPath" +#if str($inputSide) != 'None': + -sc "$inputSide" +#end if +#if str($mergingStrat): + -mc "$mergingStrat" +#end if + $removeIsolated +#if str($weightFile) != 'None': + -cw "$weightFile" +#end if + $undirected + -noi "$dataPath" + $out + -o "$outputPath" +]]></command> + <inputs> + <param argument="-i" format="sbml" label="input SBML file" name="inputPath" optional="false" type="data" value=""/> + <param argument="-sc" format="txt" label="input Side compound file (recommended)" name="inputSide" optional="true" type="data" value=""/> + <param argument="-mc" label="merge compartments. Use names if consistent and unambiguous across compartments, or identifiers if compartment suffix is present (id in form "xxx_y" with xxx as base identifier and y as compartment label)." name="mergingStrat" optional="true" type="select" value="no"> + <option selected="true" value="no">no</option> + <option value="by_name">by_name</option> + <option value="by_id">by_id</option> + </param> + <param argument="-ri" checked="false" falsevalue="" label="remove isolated nodes" name="removeIsolated" truevalue="-ri" type="boolean" value="false"/> + <param argument="-cw" format="tsv" label="an optional file containing weights for compound pairs, taken into account for betweenness computation. Edges not found in file will be removed" name="weightFile" optional="true" type="data" value=""/> + <param argument="-un" checked="false" falsevalue="" label="the compound graph built from the metabolic network and used for computations will undirected, i.e. the reaction directions won't be taken into account" name="undirected" truevalue="-un" type="boolean" value="false"/> + <param argument="-noi" format="txt" label="file containing the list of metabolites of interests (one per line)" name="dataPath" optional="false" type="data" value=""/> + <param argument="-out" checked="false" falsevalue="" label="use out-degree as scoring function instead of betweenness (faster computation)" name="out" truevalue="-out" type="boolean" value="false"/> + </inputs> + <outputs> + <data format="tsv" name="outputPath"/> + </outputs> + <tests> + <test> + <param name="inputPath" value="XF_network.sbml"/> + <param name="dataPath" value="XF_network_C_NOI.txt"/> + <param name="inputSide" value="XF_network_C_Side.tab"/> + <output name="outputPath"> + <assert_contents> + <has_n_columns n="3"/> + <has_n_lines n="3"/> + </assert_contents> + </output> + </test> + <test> + <param name="inputPath" value="XF_network.sbml"/> + <param name="dataPath" value="XF_network_C_NOI.txt"/> + <param name="inputSide" value="XF_network_C_Side.tab"/> + <param name="undirected" value="true"/> + <param name="removeIsolated" value="true"/> + <param name="out" value="true"/> + <param name="mergingStrat" value="by_id"/> + <output name="outputPath"> + <assert_contents> + <has_n_columns n="3"/> + <has_n_lines n="3"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[Run a Topological Pathway Analysis (TPA) to identify key pathways based on topological properties of its constituting compounds. +From a list of compounds of interest, the app compute their betweenness centrality (which quantifies how often a compound acts as a intermediary along the shortest paths between pairs of other compounds in the network, which, if high, suggest a critical role in the overall flow within the network). Each pathway is scored according to the summed centrality of its metabolites found in the dataset. Alternatively to the betweenness, one can make use of the out-degree (the number of outgoing link, i.e. number of direct metabolic product) as a criterion of importance. TPA is complementary to statistical enrichment analysis to ensures a more meaningful interpretation of the data, by taking into account the influence of identified compounds on the structure of the pathways. +@ATTRIBUTION@]]></help> + <citations/> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Mar 13 15:52:59 2025 +0000 @@ -0,0 +1,20 @@ +<?xml version="1.0"?> +<macros> + <xml name="requirements"> + <requirements> + <requirement type="package" version="2.0.1">met4j</requirement> + <yield/> + </requirements> + </xml> + <xml name="bio_tools"> + <xrefs> + <xref type="bio.tools">met4j</xref> + </xrefs> + </xml> + <token name="@TOOL_VERSION@">2.0.1</token> + <token name="@ATTRIBUTION@"><![CDATA[ +**Attribution** + +This Galaxy tool relies on the met4j toolkit which is dedicated to the structural analysis of metabolic networks (https://forgemia.inra.fr/metexplore/met4j) + ]]></token> +</macros> \ No newline at end of file
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spatialDimensions="3"/> + </listOfCompartments> + <listOfSpecies> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_c" metaid="_83a30aa3-d844-48f9-a634-0d61506245d3" name="M_hdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_e" metaid="_5b81de6a-46d4-4aa1-b51a-a61989930aa1" name="Hexadecenoate__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ohexACP_c" metaid="_09cc2866-3763-4a58-b634-1e9391011c2c" name="3_Oxohexanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO6" hasOnlySubstanceUnits="true" id="M_sucgsa_c" metaid="_95bdb449-54c9-4128-a9b7-5d7bee0b8728" name="M_sucgsa_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H21N5O15P2" hasOnlySubstanceUnits="true" id="M_gdpddman_c" metaid="_5621cf38-5dfc-4cf2-b7e3-283d7235c86b" name="GDP_4_dehydro_6_deoxy_D_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_p" metaid="c3c6cd96-69bb-4134-bd0d-223a4a770348" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_D_c" metaid="_71a68abb-5db5-4c53-91d2-24a2e4beab94" name="D_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_e" metaid="_42cec621-b997-409f-ae61-2b06e193e88c" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_c" metaid="_4195cc12-3ead-499a-babc-f43402625ce1" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_p" metaid="_1d2341b1-a141-4a22-bd62-fa338f7f2346" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_e" metaid="_2afa5d9d-9d23-45cd-a848-5b2daa9ce630" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasp_c" metaid="_81402407-ed90-4c32-b133-7c1b5a2e1a6e" name="tRNA_Asp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_p" metaid="c63ab7cd-3059-44f4-ae8f-9b967625ebca" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_c" metaid="_59c509d6-1751-4e87-b01c-14cf34ac9b4c" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H74N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O8PRS" hasOnlySubstanceUnits="true" id="M_hexACP_c" metaid="d3d3b718-243e-4d20-b658-13f3bb77c444" name="Hexanoyl_ACP__n_C6_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_c" metaid="cf476b69-9c74-45db-bf2b-145a2fd50ba3" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H117N15O40" hasOnlySubstanceUnits="true" id="M_murein5px4p_p" metaid="c53ad754-9f5c-4984-af4c-6b2b5e446284" name="two_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H117N15O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O3" hasOnlySubstanceUnits="true" id="M_dmoxpol_c" metaid="beb0eb5d-519f-4b06-8171-7dc4a7d1af7b" name="Dimethoxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H10O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H74N1O8P1" hasOnlySubstanceUnits="true" id="M_pe160_p" metaid="a44dcca2-66e7-44ae-9186-978f6b1542ba" name="phosphatidylethanolamine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H74N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_e" metaid="_6949f66e-e627-4fdb-9009-56246e4dc4b0" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ni" hasOnlySubstanceUnits="true" id="M_ni2_c" metaid="_40131acb-4ecf-4acd-af9c-91224f8e4960" name="nickel" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ni</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O6" hasOnlySubstanceUnits="true" id="M_3dhq_c" metaid="_89b598af-c5d9-4d78-a32f-886d14936013" name="3_Dehydroquinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11N3O4P" hasOnlySubstanceUnits="true" id="M_hisp_c" metaid="_406b497f-432f-4b2b-a34a-075cb4a46571" name="L_Histidinol_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11N3O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4" hasOnlySubstanceUnits="true" id="M_23dhmb_c" metaid="_07921bfa-da8f-4679-84dc-9765988d4938" name="R__2_3_Dihydroxy_3_methylbutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N4O9P" hasOnlySubstanceUnits="true" id="M_fprica_c" metaid="_72798c59-4852-475e-a2d5-2e972bc9ac1c" name="5_Formamido_1__5_phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_p" metaid="_30c3518e-a938-43f3-9051-a3e711f90b51" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65N1O10P1" hasOnlySubstanceUnits="true" id="M_ps140_c" metaid="_3aa73b52-633a-48e2-b679-62294e71a142" name="phosphatidylserine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man6p_c" metaid="_6a1d6c5a-1a82-48c8-b683-6aaa8bc960f0" name="D_Mannose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N4O9P" hasOnlySubstanceUnits="true" id="M_5aprbu_c" metaid="_956bb393-be66-4b4b-a4ba-2d429c8bd248" name="5_Amino_6__5__phosphoribitylamino_uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbdox_c" metaid="_284731a5-c739-47cf-8d77-97ce4a14ed4a" name="fused_thiol_disulfide_interchange_protein__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_atp_c" metaid="_19cd466b-47a4-41ff-8587-533476481886" name="ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_p" metaid="_61db7a7f-c90a-4ce6-bca1-2f069f020836" name="M_fuc_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_e" metaid="_927232ea-6021-48bc-9666-ef542c59560c" name="M_btn_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOSR" hasOnlySubstanceUnits="true" id="M_cystrna_c" metaid="f79ecc3e-685c-48e1-80dc-e13aa96fbbed" name="L_Cysteinyl_tRNA_Cys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NOSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O2" hasOnlySubstanceUnits="true" id="M_octa_c" metaid="cc6b7289-42de-4e34-8da9-691d9ccc8500" name="octanoate__n_C8_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_p" metaid="_749e35e8-ab24-45d7-93ba-1afe7f049832" name="M_btn_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8NO4PS" hasOnlySubstanceUnits="true" id="M_4mpetz_c" metaid="cd921023-9544-4ec4-b121-887e4358d966" name="4_Methyl_5__2_phosphoethyl__thiazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8NO4PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_c" metaid="c72afa0a-cfdb-4bcf-ab8d-2d7b74fb2088" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOR" hasOnlySubstanceUnits="true" id="M_valtrna_c" metaid="_4251ba8b-01cc-4752-9443-08cef24bdb93" name="L_Valyl_tRNA_Val_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagly_c" metaid="_9c1bcdbe-60da-4ece-bd5a-0a9bf30c26b0" name="tRNA_Gly_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H13N2O2" hasOnlySubstanceUnits="true" id="M_orn_e" metaid="_86686940-58f7-40a6-b87b-9bcfb66c59e9" name="Ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H13N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoame_c" metaid="_1052078b-3eba-478d-9087-7b7e0e161b42" name="malonyl_CoA_methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H36N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_e" metaid="e11a6b2b-0b7e-4a36-8a04-0af722bbf9c1" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H32N4O4" hasOnlySubstanceUnits="true" id="M_ppp9_c" metaid="d533814d-ad29-4c19-8387-463c4c6fa319" name="Protoporphyrin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H32N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_e" metaid="_3421dea5-b95e-4be2-b898-7349691945a2" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O" hasOnlySubstanceUnits="true" id="M_h2o_c" metaid="ba40bb8c-cf64-404e-9faa-1c5435e09c2c" name="H2O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H15N2O3S" hasOnlySubstanceUnits="true" id="M_btn_c" metaid="e34048c3-50fa-419d-9e5d-ac985f6fdf30" name="Biotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H15N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_c" metaid="_7f7c8e07-16ce-490f-b701-6cfb7edd1cc5" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O8P" hasOnlySubstanceUnits="true" id="M_cmp_c" metaid="ce3a8631-3514-4927-a5fc-9266053df778" name="CMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N2O5" hasOnlySubstanceUnits="true" id="M_sucorn_c" metaid="_49eee4fa-a32f-4d62-99a1-a758a3e171b8" name="M_sucorn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11O7P" hasOnlySubstanceUnits="true" id="M_2me4p_c" metaid="_74b04e95-84b3-4aab-94da-f8858bd56b44" name="2_C_methyl_D_erythritol_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_e" metaid="_795a3dc1-b108-47e4-82da-a966f9204c0e" name="M_LesA_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_c" metaid="_7bc2cd0a-2755-4383-9602-b2b68e04de0e" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_c" metaid="_9a311e5a-f85b-4af7-83b1-307bb1e1a41e" name="M_LesA_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O21P4" hasOnlySubstanceUnits="true" id="M_gp4g_c" metaid="_7f862854-7604-4f31-90ef-06ec0af81a4a" name="P1_P4_Bis_5__guanosyl__tetraphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O21P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSe" hasOnlySubstanceUnits="true" id="M_seln_c" metaid="_7f45bce4-645d-4eb0-a162-61532f8bb480" name="Selenide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2" hasOnlySubstanceUnits="true" id="M_co2_p" metaid="e3fda4fd-1cd7-4cfc-9921-a79e27f8ce10" name="Carbon_dioxide_CO2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c3hmp_c" metaid="_216d7643-f563-44c8-9cd7-6c6f804a68b7" name="3_Carboxy_3_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H66N7O17P3S" hasOnlySubstanceUnits="true" id="M_stcoa_c" metaid="bded8546-6745-4b87-a769-96038f1148b6" name="Stearoyl_CoA__n_C18_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H66N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H79N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdecg_c" metaid="_71e9eef0-13ec-4a15-ae4e-41e4f8012ba2" name="CDP_1_2_dihexadecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C44H79N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61O13P2" hasOnlySubstanceUnits="true" id="M_pgp141_p" metaid="f1441528-9bed-4ed1-81d1-40a0e3d45edf" name="Phosphatidylglycerophosphate__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12O11P" hasOnlySubstanceUnits="true" id="M_kdo8p_c" metaid="_3870b262-b055-423b-82f9-cceb24028cf0" name="3_Deoxy_D_manno_octulosonate_8_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H21N4O9P" hasOnlySubstanceUnits="true" id="M_fmnh2_c" metaid="fbc52601-3142-4153-a874-df831c3329e3" name="Reduced_FMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H21N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f1p_c" metaid="_732925ea-c862-44b5-b095-fc72f48c84c1" name="D_Fructose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C80H124N16O42" hasOnlySubstanceUnits="true" id="M_murein5p5p_p" metaid="_767502c9-bffc-4038-9454-353c3eec46b5" name="two_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C80H124N16O42</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_p" metaid="_859222c2-bac6-476c-aec6-1e01bb937695" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H63O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O8PRS" hasOnlySubstanceUnits="true" id="M_but2eACP_c" metaid="e30db6f9-3447-42ac-bfd6-6c005ac804b3" name="But_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H58N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdcoa_c" metaid="_40b38630-6ac7-4df3-b3d1-b8b6c5937bf9" name="Tetradecanoyl_CoA__n_C14_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H58N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C107H177N29O29S2" hasOnlySubstanceUnits="true" id="M_LesA_p" metaid="fab00509-5733-4be1-812b-dcd3bf58f433" name="M_LesA_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C107H177N29O29S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_p" metaid="_0c73fa4a-1bce-4d13-84df-e0da19418edc" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H29O7P1" hasOnlySubstanceUnits="true" id="M_1ddecg3p_c" metaid="ecffca5d-e302-4a6b-831c-ea3a5c41242e" name="1_dodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H29O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H63O8P" hasOnlySubstanceUnits="true" id="M_pa161_c" metaid="_435728ef-032c-4a1e-b01c-fa04d674b275" name="1_2_dihexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H63O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H76O4" hasOnlySubstanceUnits="true" id="M_q8h2_c" metaid="_4974a112-1b7c-4849-ba38-76daac76671f" name="Ubiquinol_8" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H76O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_p" metaid="cff7fb8f-ce56-4a84-acd8-a2651d1805c3" name="M_core_kdo2lip6_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_e" metaid="_42bc2734-835b-4640-9646-02c816f521ca" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H109N13O39" hasOnlySubstanceUnits="true" id="M_murein4p3p_p" metaid="f8f7d39e-bdaa-4ee9-814d-c0b4ec9160f5" name="two_linked_disacharide_tetrapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H109N13O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_p" metaid="_61d6192c-12fb-4874-8564-e8046e4c5c4b" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_p" metaid="_5b78739f-a245-49b5-a6c1-569bfc8d4190" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp6dm_c" metaid="f67b76aa-cca5-41d4-aa13-b154bd82377c" name="M_gdp6dm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H23N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaser_c" metaid="_94ef3223-799e-471a-a1c8-613e870c7f5d" name="tRNA_Ser_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_c" metaid="fc2173d0-12bd-44f8-89a1-2a39027bfe36" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_c" metaid="e0461604-6ffb-422a-b6b7-7b113fa01607" name="M_enter_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H18O11P" hasOnlySubstanceUnits="true" id="M_g3pi_e" metaid="_4b9027db-81ed-47db-90e0-74b9277095ad" name="sn_Glycero_3_phospho_1_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H18O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_e" metaid="_5703cd1f-aea5-4cf1-8f7d-5f9cf0f72c8d" name="M_enter_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaasn_c" metaid="_1e5964c2-05d7-4d2a-a5b9-dec66466ab0e" name="M_trnaasn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_CopA_p" metaid="_12b71ebf-a259-4f49-8429-b7845a88e872" name="Protein_CopA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_c" metaid="c7bf02ef-66b8-4dc1-9026-53fec7f7feee" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_c" metaid="_523bd485-6a20-4c1c-ba49-a4bcd8e839f5" name="M_core_kdo2lip6_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C940H1548N8O661P8" hasOnlySubstanceUnits="true" id="M_core_kdo2lip6_XF_e" metaid="_3c4b17e4-1a58-4d30-a679-831996c94151" name="M_core_kdo2lip6_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C940H1548N8O661P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O11PRS" hasOnlySubstanceUnits="true" id="M_ogmeACP_c" metaid="_83613f5f-54e6-4465-b92a-7751cae06841" name="3_Oxo_glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H27N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaleu_c" metaid="_107bbd4f-b67f-4387-9455-7b833fcf6e1e" name="tRNA_Leu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnalys_c" metaid="_79f3e812-04d9-429e-be7d-00d183252771" name="tRNA_Lys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_g3p_c" metaid="_2455d675-97e0-427d-80b5-ef339cc6e2ac" name="Glyceraldehyde_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27N3O15" hasOnlySubstanceUnits="true" id="M_enter_p" metaid="_36d171ac-68e5-47ea-84de-7f657cad5803" name="M_enter_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27N3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se" hasOnlySubstanceUnits="true" id="M_selcys_c" metaid="_2ef535bc-d692-4e1e-9cc9-ce51d614b918" name="M_selcys_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3" hasOnlySubstanceUnits="true" id="M_acorn_c" metaid="_2df9a240-cce3-45d5-92ab-8d8b55b249ba" name="N2_Acetyl_L_ornithine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HPO4" hasOnlySubstanceUnits="true" id="M_pi_c" metaid="b321ede9-f332-40f5-bd9c-8757e9fae686" name="Phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HPO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_e" metaid="cb7ad6c5-1d9d-46be-985b-1580063ca9d6" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_sec_c" metaid="_813b9900-7e83-4d33-8f58-d813654969ef" name="M_sertrna_sec_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_achms_c" metaid="_654b6487-592d-4ac2-9d08-f499b6df30b3" name="O_Acetyl_L_homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_10fthf_c" metaid="a18c185f-3892-48a6-9c88-b7d7fb0619e6" name="10_Formyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H32N7O16P3S" hasOnlySubstanceUnits="true" id="M_coa_c" metaid="c9061d98-c8fc-433d-a37f-e984fe545067" name="Coenzyme_A" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H32N7O16P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S" hasOnlySubstanceUnits="true" id="M_so2_c" metaid="_20457c4d-2162-49a6-807b-5e5f4d4227af" name="M_so2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_p" metaid="_3d51ca32-ee50-4913-a791-0c41f0989c06" name="M_acald_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO4" hasOnlySubstanceUnits="true" id="M_2ogm_c" metaid="_5884f0fd-9263-47df-88ea-da40d9d374e3" name="M_2ogm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O6S" hasOnlySubstanceUnits="true" id="M_amob_c" metaid="_1d835c16-17ae-4d73-93bb-36cb6d93ba15" name="S_Adenosyl_4_methylthio_2_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_e" metaid="_0abd461f-9a15-4211-9311-ce43c62aab62" name="M_acald_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O" hasOnlySubstanceUnits="true" id="M_acald_c" metaid="_143625ae-b64c-4fb0-80f6-9efe13a7b9d0" name="Acetaldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O3" hasOnlySubstanceUnits="true" id="M_cph4_c" metaid="afd05253-971f-4a66-8b65-5ac1f306509d" name="6_carboxy_5_6_7_8_tetrahydropterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O16P2" hasOnlySubstanceUnits="true" id="M_dtdpglu_c" metaid="_0bba1122-5723-4fd3-8f21-e2e91020abec" name="dTDPglucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H24N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdr1p_c" metaid="_184f9078-bb7d-46cf-8a62-b5539976b76d" name="M_5mdr1p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_c" metaid="ad0e2184-1624-418e-9618-17b79197331f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_c" metaid="_8d2dc306-1ffd-4add-8283-c1b37704bcb9" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O7" hasOnlySubstanceUnits="true" id="M_5fthf_c" metaid="acdfb364-95bd-4e0e-a46f-f1920c900da7" name="5_Formyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcpalm9eACP_c" metaid="f543c9a3-fd16-4ccb-9272-7617c7a973f0" name="R__3_hydroxy_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_c" metaid="_4048579e-4f31-481a-947b-5325a88a525f" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H82NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S4Fe4" hasOnlySubstanceUnits="true" id="M_4fe4s_c" metaid="_9b98389e-5f17-43b1-97af-987fda6edd76" name="4Fe_4S__iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S4Fe4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_e" metaid="_6204c224-60fd-496c-ae7d-3a640cf96806" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5" hasOnlySubstanceUnits="true" id="M_gsn_c" metaid="_675aea4f-9d89-4316-b21d-8835e7bdf088" name="Guanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_p" metaid="bd079a49-4a78-4596-b5a4-e1e2e0ce31a1" name="M_gua_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_c" metaid="_0abe441f-373f-44a8-a346-438e07c487ed" name="M_s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="S" hasOnlySubstanceUnits="true" id="M_s_e" metaid="_02ce892b-ee70-4605-826f-fac5cfb92aa4" name="M_s_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H23N6O5S" hasOnlySubstanceUnits="true" id="M_amet_c" metaid="_05c3b996-37d0-476c-bd6b-8e86a72850b0" name="S_Adenosyl_L_methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H23N6O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C800H1302N100O501" hasOnlySubstanceUnits="true" id="M_chitin_polymer_e" metaid="_2f386823-86f0-417b-a5d8-4ddbd63d6fe5" name="M_chitin_polymer_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C800H1302N100O501</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H82NO8P" hasOnlySubstanceUnits="true" id="M_pe180_p" metaid="_4aa176f4-546c-4bce-bbbc-259d7819815a" name="phosphatidylethanolamine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H82NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N3O7P" hasOnlySubstanceUnits="true" id="M_air_c" metaid="bafef441-55b1-482a-83ef-2628e0331c85" name="5_amino_1__5_phospho_D_ribosyl_imidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12N3O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57N1O10P1" hasOnlySubstanceUnits="true" id="M_ps120_c" metaid="_7286fb91-0c02-49b2-9a94-7e458d73ae30" name="phosphatidylserine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2OR" hasOnlySubstanceUnits="true" id="M_lystrna_c" metaid="adb25803-b9e7-4b8b-a860-1b9ffd6ad032" name="L_Lysine_tRNA__Lys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_e" metaid="b20f58dc-f884-461b-a907-84d41e230386" name="M_gua_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O" hasOnlySubstanceUnits="true" id="M_gua_c" metaid="_8174d229-a534-4c7b-b1e1-9157c17c78fb" name="Guanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mg" hasOnlySubstanceUnits="true" id="M_mg2_p" metaid="_3478a092-b7f3-4a06-b4b7-2932b0c98361" name="Magnesium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mg</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2R" hasOnlySubstanceUnits="true" id="M_tyrtrna_c" metaid="_104ba3cc-a31b-4300-b87d-1d71d75e5eb4" name="L_Tyrosyl_tRNA_Tyr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H20N4O6" hasOnlySubstanceUnits="true" id="M_ribflv_c" metaid="_355d6a80-123c-435c-86bd-93b68e593626" name="Riboflavin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H20N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20N2O9PS" hasOnlySubstanceUnits="true" id="M_4ppcys_c" metaid="_2279bafc-1eda-409b-8625-74311a00675d" name="N___R__4_Phosphopantothenoyl__L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H20N2O9PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H65O7P2" hasOnlySubstanceUnits="true" id="M_octdp_c" metaid="_699d66d7-799f-41db-829e-575eb4fd5124" name="all_trans_Octaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H65O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2" hasOnlySubstanceUnits="true" id="M_gthox_p" metaid="_26ddbc66-1814-4d9a-99fa-e789983744f4" name="Oxidized_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O3" hasOnlySubstanceUnits="true" id="M_4izp_c" metaid="_35b8c0ec-00e3-478a-8b32-e6ea450f48ca" name="4_Imidazolone_5_propanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H7N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N4O3" hasOnlySubstanceUnits="true" id="M_cdg_c" metaid="ba9e8d8e-5f5a-4d46-a4eb-ee9bc01d6cc8" name="7_deaza_7_carboxyguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N4O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_BIOMASS_XF_c" metaid="_977000d3-3f7b-4a5e-9b66-f76349244748" name="M_BIOMASS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41.554061837540075H71.78553537948964N9.85382400884015O14.938244017389934P0.8811200258000156R1.27675647831893E-15Mn7.34919E-4Mo7.37685E-6Cl0.005532639K0.207473951Co2.67411E-5Cu7.53361E-4S0.24700915678000002Zn3.62388E-4Mg0.009221064Ni3.43024E-4Ca0.005532639Fe0.017346515399999998</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_2ins_c" metaid="_18dda0b7-ffe4-4fbe-bea5-0c48a7b1fba9" name="2_Inosose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_4abz_c" metaid="c3252fbe-8ecb-4cea-a46e-72ae990ae870" name="4_Aminobenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O14P2" hasOnlySubstanceUnits="true" id="M_prbamp_c" metaid="_9b62d40a-b552-45b2-bcaa-e6abfc107cf8" name="1__5_Phosphoribosyl__AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="MoO4" hasOnlySubstanceUnits="true" id="M_mobd_p" metaid="ddf06dd7-4534-41b4-b9f5-4bfa80feb7e8" name="Molybdate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: MoO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_c" metaid="_9fa08c5e-81e9-4b89-bd09-002a3b6a40a1" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O7P2" hasOnlySubstanceUnits="true" id="M_udcpdp_p" metaid="a5341159-851e-4f2b-8b6c-1a0bef5d110f" name="Undecaprenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O2" hasOnlySubstanceUnits="true" id="M_ac_e" metaid="b8c75f41-aa81-415f-adca-07a804537370" name="Acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O2S" hasOnlySubstanceUnits="true" id="M_mtpp_c" metaid="_5168e61b-5473-429a-af16-459b37a372fa" name="M_mtpp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3omrsACP_c" metaid="b6f11f96-e986-4bb4-8cfa-769c56fd0286" name="3_Oxotetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_e" metaid="bfff0b3d-04c2-4d68-be9f-36697be6f607" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O5" hasOnlySubstanceUnits="true" id="M_cbasp_c" metaid="_1955851f-53a2-41d8-810e-c6a10d53f245" name="N_Carbamoyl_L_aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_c" metaid="_95bfee1b-96ad-46c3-ad16-1dec0a80adde" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_c" metaid="_618ce2bf-2ed0-4cb8-aaa2-7c81d5cc9570" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_c" metaid="_4c529996-78c3-4952-99e8-fba13ecc8f9f" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_p" metaid="fae23ffb-3137-4836-bcf0-8783b4e71fdc" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_e" metaid="_3a4a7647-cc01-4b46-a0ed-e2caca8ae008" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_e" metaid="_122ad39f-5de6-42b6-ba49-0c2c3585b9f4" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11" hasOnlySubstanceUnits="true" id="M_chtbs_p" metaid="d8376137-fc3d-4416-9fda-76a02f848570" name="N_N_diacetylchitobiose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H28N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpgalur_c" metaid="_3e478232-7397-4d11-856d-df50f0daaac3" name="M_udpgalur_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_e" metaid="ff16cf44-82b1-4346-94e1-245b42443e1a" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_p" metaid="_6c5d646c-4449-4507-ad71-ba318ebaf4df" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O4" hasOnlySubstanceUnits="true" id="M_dcyt_c" metaid="e43f2edb-9189-4fbb-a1f9-430eb760eae3" name="Deoxycytidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N3O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_c" metaid="c682527b-94e1-4c8a-87df-9517957f0965" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H102N12O37" hasOnlySubstanceUnits="true" id="M_murein3px3p_p" metaid="_476f5504-6060-4a5b-ba42-ea0c14f37e1a" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C68H102N12O37</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C64H115N2O30P2" hasOnlySubstanceUnits="true" id="M_kdolipid4_XF_c" metaid="_8f6f558e-3e61-4022-81a0-821f62a0529c" name="M_kdolipid4_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C64H115N2O30P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_c" metaid="_1bc902f1-27a8-40e4-ac43-2f6dadec93e3" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O12P2" hasOnlySubstanceUnits="true" id="M_udp_c" metaid="_886d8581-de18-42c5-b2f3-5bd554ba92bd" name="UDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_octeACP_c" metaid="_6fc1220a-b131-4747-81f2-970e39a8f3aa" name="cis_octadec_11_enoyl__acyl_carrier_protein___n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_c" metaid="_9892e8f7-cd75-424c-9921-d2e5441a9bf2" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H22N3" hasOnlySubstanceUnits="true" id="M_spmd_p" metaid="_88096ddb-8776-4948-a7de-e0cf40e74b5d" name="Spermidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H22N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_c" metaid="_94c434a4-5a34-4449-8db4-853c81a64cc9" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H19N4O9P" hasOnlySubstanceUnits="true" id="M_fmn_c" metaid="_5ad4d4a7-2aa3-47bd-8e30-3d523930f1e9" name="FMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H19N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N4O6" hasOnlySubstanceUnits="true" id="M_rbflvrd_c" metaid="a6e8fe44-0f41-4834-91f6-6edf74df2da0" name="M_rbflvrd_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H22N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_e" metaid="_0c8316dc-3ba0-49d6-a957-aae85d9e7cad" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69O13P2" hasOnlySubstanceUnits="true" id="M_pgp161_p" metaid="a0da53b8-c792-41ba-8484-f4ec21057617" name="Phosphatidylglycerophosphate__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_c" metaid="_9df2aff8-e262-4ebe-9101-31dd63ea3f87" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O20P4" hasOnlySubstanceUnits="true" id="M_prbatp_c" metaid="f7a1bbc2-1d49-4a51-969c-3e4ea072aa16" name="1__5_Phosphoribosyl__ATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N5O20P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O11P2" hasOnlySubstanceUnits="true" id="M_cdp_c" metaid="_12dfc747-9d1d-42fc-8415-cef561969dd8" name="CDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H8O3" hasOnlySubstanceUnits="true" id="M_glyc_e" metaid="_36ac6ef4-5949-4647-ae8e-7d19fdfdb042" name="Glycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H8O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_pant_R_c" metaid="ba5bdbf6-327c-4868-bdb6-05e79154bf88" name="R__Pantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4O2" hasOnlySubstanceUnits="true" id="M_arg_L_p" metaid="e75fff8e-1303-4870-b151-b37a796d810c" name="L_Arginine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_c" metaid="_396efca1-3737-4da9-801b-835aba9e0d3b" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H62O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_p" metaid="f3256e54-e8cb-4076-a633-48b7d04e0753" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_p" metaid="_94e1c75d-9258-432e-a9f0-c5510773ae4b" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_e" metaid="_75423fa7-d028-4ccd-87fd-e54fb68a549e" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O6" hasOnlySubstanceUnits="true" id="M_2mcacn_c" metaid="_0369c556-1309-46b7-911c-c8ae4028fa9e" name="cis_2_Methylaconitate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_p" metaid="_53a3581f-53a2-4327-bd2e-d961186629d2" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H71O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_c" metaid="_5d8acb70-ed97-4be9-8bf7-0924b2df4903" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H3N2O4" hasOnlySubstanceUnits="true" id="M_orot_e" metaid="_2a2ef40d-c0e1-43a3-b035-3f8c6aad8341" name="Orotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H3N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O4S" hasOnlySubstanceUnits="true" id="M_so4_p" metaid="_0e3610ce-7c67-4912-b48c-247cfa74a857" name="Sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_e" metaid="_2a472705-813d-43ca-bc43-a33f7afca219" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2S" hasOnlySubstanceUnits="true" id="M_h2s_c" metaid="ad954544-7662-42d5-800f-2f227ad2acaf" name="Hydrogen_sulfide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H71O8P1" hasOnlySubstanceUnits="true" id="M_pa181_c" metaid="_2726332e-0f8d-4091-a348-94bdb68d7b10" name="1_2_dioctadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H71O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_tre6p_c" metaid="_1a6fc82e-1e0c-4fc2-99eb-4550d4c85a83" name="alpha_alpha__Trehalose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H21O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P" hasOnlySubstanceUnits="true" id="M_dxyl5p_c" metaid="f1d8ed1b-b19b-4fde-8fcd-c8e21723c2b3" name="1_deoxy_D_xylulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H62O10P1" hasOnlySubstanceUnits="true" id="M_pg141_p" metaid="_2a7a19c8-9350-4c9e-a897-932010c24e8e" name="Phosphatidylglycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H62O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_p" metaid="_88c0f2d2-4508-4acc-bf5f-a0d5b625e467" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_p" metaid="d0fff8a7-0697-486a-bf94-43f3a5b74cba" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103O11N1P2" hasOnlySubstanceUnits="true" id="M_f2Nappudp_c" metaid="bb9d8548-b26d-4f7a-b0d4-1f504d604de4" name="M_f2Nappudp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H103O11N1P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_p" metaid="_69c8f14d-d64c-4d8c-9a77-25967c14aa76" name="D_Fructose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2NO2" hasOnlySubstanceUnits="true" id="M_dhgly_c" metaid="_7254c1c8-5a1c-4d57-8589-aeecd451abfd" name="M_dhgly_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H2NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_c" metaid="_8245318c-ed8c-49d2-84fc-e779a60f1962" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H66N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_e" metaid="_8f084f1e-30e1-4cb4-bcb6-460cd5e20606" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2" hasOnlySubstanceUnits="true" id="M_his_L_c" metaid="_61773072-1fb7-4ec7-ac8f-2390ada500aa" name="L_Histidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_fdp_c" metaid="_6ccf20bf-c7be-4f81-a98e-3f4d6b73a91c" name="D_Fructose_1_6_bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H169N21O59" hasOnlySubstanceUnits="true" id="M_murein4px4p4p_p" metaid="_4cb12875-094c-41d1-94ff-bc20d2e0fbd7" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala___one_uncrosslinked_tetrapaptide___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C111H169N21O59</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73N1O10P1" hasOnlySubstanceUnits="true" id="M_ps160_c" metaid="b76187c5-3735-4406-9f26-251c7ca293bc" name="phosphatidylserine__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H66N1O8P1" hasOnlySubstanceUnits="true" id="M_pe140_p" metaid="bf97d63f-337c-4ba2-a1db-c9d2ed5dfe73" name="phosphatidylethanolamine__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H66N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O5" hasOnlySubstanceUnits="true" id="M_3dhsk_c" metaid="_041d6376-f95e-45b0-9bdd-fac22a1cf373" name="3_Dehydroshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14N3O4" hasOnlySubstanceUnits="true" id="M_accitr_c" metaid="b0c01965-2d7a-4351-9104-cb4d34ab2630" name="M_accitr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14N3O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O13P3" hasOnlySubstanceUnits="true" id="M_ditp_c" metaid="dfef8771-f0e8-476f-84ae-980d23f32ed1" name="dITP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4" hasOnlySubstanceUnits="true" id="M_thbpt4acam_c" metaid="f1c18f41-2bc6-4b31-b2ec-468cb38d0dca" name="Tetrahydrobiopterin_4a_carbinolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H124O17P2" hasOnlySubstanceUnits="true" id="M_clpn140_p" metaid="d976ebdc-3b64-4c21-b18c-e8002752fbda" name="cardiolipin__tetratetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C65H124O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_e" metaid="_3b4e271f-4b4f-46be-b161-64021c86a3fd" name="M_pheme_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O8P" hasOnlySubstanceUnits="true" id="M_ohpb_c" metaid="_43cfdd25-bc13-446b-b54b-1c3ecd101f70" name="2_Oxo_3_hydroxy_4_phosphobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24N3O15P" hasOnlySubstanceUnits="true" id="M_ckdo_c" metaid="_7358cc12-80df-4e0c-938a-3256918f1736" name="CMP_3_deoxy_D_manno_octulosonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H24N3O15P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_p" metaid="ef6fc25f-dc22-448e-ac56-09bb7cd71dd7" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_iscs_c" metaid="_22cb5b73-fbba-4c16-a2ed-1e9242363b30" name="IscS_sulfur_acceptor_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O5S" hasOnlySubstanceUnits="true" id="M_glucys_c" metaid="f236c86d-42fa-4142-b0e7-d89e523011c4" name="gamma_L_Glutamyl_L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13N2O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2OR" hasOnlySubstanceUnits="true" id="M_trptrna_c" metaid="_0529dcc8-2336-4478-a8e2-4e0f631fa51b" name="L_Tryptophanyl_tRNA_Trp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N2OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15O" hasOnlySubstanceUnits="true" id="M_octapb_c" metaid="f7686454-00d0-42f2-b814-35f5295d8038" name="octanoate__protein_bound_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_c" metaid="_1abc66e7-59fa-40cd-88c1-4242cf1fa425" name="Protoheme" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H3N" hasOnlySubstanceUnits="true" id="M_nh3_c" metaid="b86d4940-5cb3-4099-971b-2bcc661b41b7" name="M_nh3_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H3N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_fru_e" metaid="_4cb9c971-bd9c-48a4-a844-7414f11e8932" name="D_Fructose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tmrs2eACP_c" metaid="c4c1e4fd-5a97-403f-916f-593ac932e591" name="trans_Tetradec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_p" metaid="_57754263-bd27-4ea0-b4c9-9a119d3c8eed" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_e" metaid="_52f357c9-6dc1-429d-ad0d-51c134be17ad" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctACP_c" metaid="_4f206e71-6854-4ada-8bf4-c315e03c6c74" name="R__3_Hydroxyoctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5" hasOnlySubstanceUnits="true" id="M_ade_c" metaid="_400eef5a-a6b2-4fda-bfb1-350215ef981e" name="Adenine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_tag6p_D_c" metaid="_2fdadae5-7512-4e34-a916-92f11dfbc22d" name="M_tag6p_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H24N3" hasOnlySubstanceUnits="true" id="M_na15dap_c" metaid="_64ba78a0-186c-45a2-b118-8ec27de6bd9e" name="M_na15dap_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H24N3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_pheacnit_c" metaid="cfd55262-5b07-4537-8d4f-7589f090f6c0" name="Phenylacetonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6O8P" hasOnlySubstanceUnits="true" id="M_4per_c" metaid="_1f658f0f-13bc-4762-bb3d-5ab2ea667f37" name="4_Phospho_D_erythronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H56N7O17P3S" hasOnlySubstanceUnits="true" id="M_tdecoa_c" metaid="_0e92c27a-f47c-4a45-adce-07b0220da4af" name="Tetradecenoyl_CoA__n_C14_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H56N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O9P2" hasOnlySubstanceUnits="true" id="M_2mecdp_c" metaid="_65745c5a-9ad9-4206-88c7-5d4a1d556609" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O9P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_c" metaid="_904be4a7-e1c6-4224-901a-ee9c05f9bd13" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P" hasOnlySubstanceUnits="true" id="M_g3pe_e" metaid="_5163c9e9-c52c-43a2-aa1d-5212aa0df27f" name="sn_Glycero_3_phosphoethanolamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9O3" hasOnlySubstanceUnits="true" id="M_tmoxdpq_c" metaid="_5dc181bf-7b30-4e56-a32b-2125c3f403ac" name="tetramethoxydiphenylquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30N6O12S2Se" hasOnlySubstanceUnits="true" id="M_dgslnt_c" metaid="a265ea4f-bf5e-4aca-8bca-8b5d5c1a15d4" name="M_dgslnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H30N6O12S2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H38N4O17" hasOnlySubstanceUnits="true" id="M_hmbil_c" metaid="_12277419-30ac-46b8-a5c0-7da316ff20ec" name="Hydroxymethylbilane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H38N4O17</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13N2O9P" hasOnlySubstanceUnits="true" id="M_fgam_c" metaid="_6f4ac80f-34f4-49cf-97d7-f2a191e7f6bd" name="N2_Formyl_N1__5_phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13N2O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_c" metaid="_4ce2e4aa-b2df-43a7-8dca-aed5ebdf3607" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_e" metaid="_46466521-2bd4-405a-a792-7e71ccb6e2a2" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbgox_p" metaid="_3ccba35c-1507-4ef0-beb4-8e449643c06b" name="M_dsbgox_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_leutrna_c" metaid="_5a4d57a8-8d7d-4c7c-b513-ba3118976bde" name="L_Leucyl_tRNA_Leu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_2cpr5p_c" metaid="b943f4bf-1162-4b51-971c-2b5ca8356d8b" name="1__2_Carboxyphenylamino__1_deoxy_D_ribulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H13NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c7mrseACP_c" metaid="f3aeb5ef-5d98-4c04-83cf-f75440550e36" name="trans_3_cis_7_myristoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H43N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34FeH30N4O4" hasOnlySubstanceUnits="true" id="M_pheme_p" metaid="_026945df-54db-48df-be4f-6d32c2a30bc4" name="M_pheme_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34FeH30N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C57H108O17P2" hasOnlySubstanceUnits="true" id="M_clpn120_p" metaid="eadfade5-58ca-408e-a1e6-177a0f674584" name="cardiolipin__tetradodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C57H108O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H24N6O3S" hasOnlySubstanceUnits="true" id="M_ametam_c" metaid="_90a70698-c4fd-42d3-a190-fce1e543592b" name="S_Adenosylmethioninamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H24N6O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N4O6" hasOnlySubstanceUnits="true" id="M_argsuc_c" metaid="_548dad0d-e810-4e0c-916f-533710098c69" name="N_omega___L_Arginino_succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_p" metaid="ef437769-d96e-486c-a0ac-7675c9c1f6b6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H57N7O20</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8NO6P" hasOnlySubstanceUnits="true" id="M_pydx5p_c" metaid="a265d20f-239c-4f2b-96e4-47806c52cb44" name="Pyridoxal_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H8NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H63N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdddecg_c" metaid="_5e0de559-0d9f-4aef-bea2-0424d18015d3" name="CDP_1_2_didodecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C36H63N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H39N5O14" hasOnlySubstanceUnits="true" id="M_anhm3p_c" metaid="_09dfe524-bbda-4378-a739-2054adc3159d" name="1_6_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H39N5O14</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O7P2" hasOnlySubstanceUnits="true" id="M_2mahmp_c" metaid="_8f0c1114-c946-4418-90a9-839ab1169ae7" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N3O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H57N7O20" hasOnlySubstanceUnits="true" id="M_anhgm4p_c" metaid="ea3dd031-aa5c-47ed-910a-0abf1490feef" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H57N7O20</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_L_c" metaid="_23436539-9e41-4a4d-a6d2-81cd76e0feb0" name="M_xu5p_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O3S" hasOnlySubstanceUnits="true" id="M_4met2obut_c" metaid="_368e95c1-6823-484a-9e7b-8cf21f3f3edb" name="M_4met2obut_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O8PRS" hasOnlySubstanceUnits="true" id="M_ddcaACP_c" metaid="a40a1259-338c-48b2-806e-4b8876626406" name="Dodecanoyl_ACP__n_C12_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H43N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H34N7O17P3S" hasOnlySubstanceUnits="true" id="M_accoa_c" metaid="dc821adc-7533-46fc-b79a-b053bc224359" name="Acetyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H34N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H28N9O13P3S" hasOnlySubstanceUnits="true" id="M_athtp_c" metaid="_14063840-dfe8-4359-ad41-296aff807402" name="M_athtp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H28N9O13P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_e" metaid="ea9e4baf-ac95-4edd-9e5f-f6af023440fd" name="M_man_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatrp_c" metaid="_4133f28a-dc52-4412-a730-8785003f0495" name="tRNA_Trp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_p" metaid="_68615065-261f-4adb-90dd-4169baae9fee" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_p" metaid="_1425e0c1-5151-429b-82d0-690b4ac59ccc" name="M_EPS_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_man_p" metaid="f7ff6e43-be3c-438a-8e9b-65925ce6ea46" name="M_man_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N5O8P2" hasOnlySubstanceUnits="true" id="M_6hmhptpp_c" metaid="_409c710f-29d6-4d07-b8f4-d87df02cb571" name="6_hydroxymethyl_dihydropterin_pyrophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8N5O8P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3" hasOnlySubstanceUnits="true" id="M_alltn_c" metaid="_47bab33a-0766-4505-87e4-28d8a330b249" name="Allantoin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6N4O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_e" metaid="_44d6e309-8a37-487d-99c4-d0bdb19e9ec2" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6" hasOnlySubstanceUnits="true" id="M_uri_c" metaid="f8983947-5a36-4518-b9bf-e2aef0578fdd" name="Uridine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N2O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NO5P" hasOnlySubstanceUnits="true" id="M_cbp_c" metaid="b1c48880-7eb1-4123-981b-4ee1cea764b5" name="Carbamoyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH2NO5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cd" hasOnlySubstanceUnits="true" id="M_cd2_c" metaid="_4eed35d5-b595-421f-adaf-11b88f15f818" name="Cadmium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cd</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2HO3" hasOnlySubstanceUnits="true" id="M_glx_c" metaid="_674c32f1-edd7-40d6-a8bd-5f6faae95194" name="Glyoxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2HO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_L_p" metaid="b7003694-442e-48bd-a6fd-13dbdfd3041b" name="L_Cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O8P" hasOnlySubstanceUnits="true" id="M_skm5p_c" metaid="_61c0b10c-e2ef-43ea-9718-a86f1544ca6e" name="M_skm5p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_p" metaid="_1099b2b6-5b56-4daa-b70e-9a2872702c32" name="M_kdo2lipidA_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g1p_c" metaid="f0b1a5ef-33c9-4a08-92b5-7871d31dfeec" name="D_Glucose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dm_c" metaid="_2a63a7ff-a67f-4f69-b544-8a572a3bc467" name="dTDP_4_dehydro_6_deoxy_L_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H22N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_c" metaid="_502ee221-f070-45a1-b54b-0c150d3ff782" name="M_kdo2lipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O14P" hasOnlySubstanceUnits="true" id="M_suc6p_c" metaid="_7253893e-3747-45d3-a25b-3efa6dbb7ecb" name="Sucrose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H21O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O4" hasOnlySubstanceUnits="true" id="M_2omhmbl_c" metaid="f209ff94-a4fd-4bf0-a0b0-794f2dc7026f" name="2_Octaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H74O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C96H172N2O41P2" hasOnlySubstanceUnits="true" id="M_kdo2lipidA_XF_e" metaid="_69303646-b652-47d7-b28c-a06b743379f5" name="M_kdo2lipidA_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C96H172N2O41P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H139N2O38P3" hasOnlySubstanceUnits="true" id="M_hphhlipidA_XF_c" metaid="_3e5799d3-05f9-4a49-96cc-7de3d1cc505c" name="M_hphhlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H139N2O38P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O5" hasOnlySubstanceUnits="true" id="M_duri_c" metaid="_34107222-3dde-46bf-9616-4a1acfd462f1" name="Deoxyuridine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_p" metaid="_57e43951-ed1a-4e31-820d-96d129a5db07" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_tddec2eACP_c" metaid="_59c66f20-37e6-4161-8b60-c809a99967cb" name="trans_Dodec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnagln_c" metaid="dfb26a16-0150-4829-98dd-75d71683c2c5" name="tRNA_Gln_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_e" metaid="_06f569a1-82b1-43b5-b046-026c0df888af" name="M_feenter_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27FeN3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdox_c" metaid="cf02ed71-77c9-4b39-80b2-51932a2f7eca" name="Oxidized_thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O4S2R4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O8P" hasOnlySubstanceUnits="true" id="M_g3pg_p" metaid="e47dbb18-e115-41f7-9384-3cc6a6e3458c" name="Glycerophosphoglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29O2" hasOnlySubstanceUnits="true" id="M_hdcea_p" metaid="_90416f38-abc8-4831-829d-60e30cc03e11" name="Hexadecenoate__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H29O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_e" metaid="_2dac150b-c2bc-4097-92ab-2c0d40f43e0b" name="M_EPS_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_e" metaid="e1acabc2-2018-4e6b-97d6-976018236dfe" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H27FeN3O15" hasOnlySubstanceUnits="true" id="M_feenter_p" metaid="_9c8ce71a-2f18-4327-ad3f-83dd1397a99c" name="M_feenter_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H27FeN3O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O3" hasOnlySubstanceUnits="true" id="M_phpyr_c" metaid="a97a873d-235e-43f9-8f4f-ccc996e10f53" name="Phenylpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H7O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hdecACP_c" metaid="_7df5fb06-d0db-476d-ab24-9362bd3fbfaf" name="S__3_Hydroxydecanoyl__acyl_carrier_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C26H43O25P" hasOnlySubstanceUnits="true" id="M_EPS_XF_c" metaid="_4ec00c07-8dd8-42fd-8e51-fae404b3a71b" name="M_EPS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C26H43O25P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc2p_c" metaid="_88c71068-60b9-4b38-88fe-4ea34f0dac5a" name="Glycerol_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23O2" hasOnlySubstanceUnits="true" id="M_ddca_p" metaid="_4d96532d-03b0-4b58-887f-70241760ab8b" name="Dodecanoate__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H23O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S" hasOnlySubstanceUnits="true" id="M_hcys_L_c" metaid="_4cf57846-c9a4-42d7-9458-b50552789a85" name="L_Homocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O5" hasOnlySubstanceUnits="true" id="M_thymd_c" metaid="_0ae5c203-0786-41f7-9cc0-7b9349cf63a2" name="Thymidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H14N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_p" metaid="a85023b1-6044-4628-88e4-6505990be08b" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR" hasOnlySubstanceUnits="true" id="M_sufse_c" metaid="c65b45a3-b9bd-4356-be1d-95a6ad9649b2" name="M_sufse_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_3pg_c" metaid="_7c850fdc-7ee4-4131-8713-1c4e7db33ef9" name="3_Phospho_D_glycerate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="RH2" hasOnlySubstanceUnits="true" id="M_etfrd_c" metaid="bc7d1494-f2e3-4392-a6b4-20e2abdfe54f" name="Electron_transfer_flavoprotein_reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: RH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O9PRS" hasOnlySubstanceUnits="true" id="M_3opalmACP_c" metaid="d03ccd95-0ad8-40a6-99ec-cff5d909c168" name="3_Oxohexadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H38N7O18P3S" hasOnlySubstanceUnits="true" id="M_r3hbcoa_c" metaid="_7091ffad-7925-4b77-97de-67b2358b790e" name="R__3_Hydroxybutanoyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H38N7O18P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O14P2" hasOnlySubstanceUnits="true" id="M_adprib_c" metaid="_8447d936-9b96-4794-adad-6e64e8be25e9" name="ADPribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacmam_c" metaid="_87ee04d6-6c04-42fb-99a4-635593f51ae1" name="UDP_N_acetyl_D_mannosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N2O16P2" hasOnlySubstanceUnits="true" id="M_udpxyl_c" metaid="_121290d7-eee1-43b4-9cc3-5cac99592dba" name="UDP_D_xylose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H105N2O20P" hasOnlySubstanceUnits="true" id="M_lipidAds_XF_c" metaid="fdd44c49-62fd-40fe-a8f0-de3f2a5cf27f" name="M_lipidAds_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C56H105N2O20P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_c" metaid="_929cca87-4c08-439f-8e38-8d760db037eb" name="N_Acetyl_D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H44N6O15" hasOnlySubstanceUnits="true" id="M_anhm4p_c" metaid="_55dc95a9-9c90-4e47-ac05-b51200af8681" name="1_6_anhydrous_N_Acetylmuramyl_tetrapeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H44N6O15</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8NO2" hasOnlySubstanceUnits="true" id="M_ind3ac_c" metaid="c05f427b-cebf-48fc-881b-2db18a86688c" name="Indole_3_acetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_e" metaid="_8de57525-7850-4331-955a-593d97aa5cd9" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO7P" hasOnlySubstanceUnits="true" id="M_phthr_c" metaid="_688ae74e-7e6c-444f-8ac7-ef9a56c07efc" name="O_Phospho_4_hydroxy_L_threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcddec5eACP_c" metaid="e8ad6c5c-ffcf-4c14-bf13-617ce96feeaa" name="R__3_hydroxy_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO4" hasOnlySubstanceUnits="true" id="M_thdp_c" metaid="_1b78ecb9-a1be-43a5-9061-6b31d460fca8" name="2_3_4_5_Tetrahydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H140O17P2" hasOnlySubstanceUnits="true" id="M_clpn160_p" metaid="be613459-f8dd-4b09-893a-2559577ca2fe" name="cardiolipin__tetrahexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C73H140O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6" hasOnlySubstanceUnits="true" id="M_acgam_p" metaid="ebd83331-b18c-41b4-a44b-059dcf479c03" name="M_acgam_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O8PRS" hasOnlySubstanceUnits="true" id="M_thex2eACP_c" metaid="e378c6d1-fb50-4d2c-be3f-7d9d0026a9d0" name="trans_Hex_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H41N4O16" hasOnlySubstanceUnits="true" id="M_dscl_c" metaid="ea6c4aa1-cc4d-4ada-87f2-809ebb395fa8" name="dihydrosirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H41N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H127N2O32P3" hasOnlySubstanceUnits="true" id="M_phhlipidA_XF_c" metaid="c96f56b7-b608-43d3-a6a1-356c9ba4b3e0" name="M_phhlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C70H127N2O32P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O13P2S" hasOnlySubstanceUnits="true" id="M_paps_c" metaid="f209ccf7-0a4e-4739-a0cd-7b1df95736a6" name="3__Phosphoadenylyl_sulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O13P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_c" metaid="ae1c7a8d-8097-40e1-8dac-f56ed8b8c459" name="Benzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O13P3" hasOnlySubstanceUnits="true" id="M_dgtp_c" metaid="_02b8aea4-dd62-45c1-8ee6-2ed83d65c1a7" name="dGTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_p" metaid="aba63d0f-24a8-409d-850d-51ff5ed4bb19" name="M_12dgr140_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H60O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO6P" hasOnlySubstanceUnits="true" id="M_pdx5p_c" metaid="_8c22f1f8-8834-4467-9706-e5cf85181be4" name="Pyridoxine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H10NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N5O8P1X" hasOnlySubstanceUnits="true" id="M_moadamp_c" metaid="_1673f815-08ff-48a9-a6c1-7fce124ac8f8" name="MoaD_Protein_with_bound_AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N5O8P1X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_p" metaid="_4c50d908-be09-41cc-bd87-d9e77149cd86" name="M_bz_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O7P" hasOnlySubstanceUnits="true" id="M_dimp_c" metaid="_4847f1ea-fbe8-46a0-b954-d777099b14f5" name="dIMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r1p_c" metaid="c51fe663-a96c-4d5f-b044-fd55cadbf789" name="alpha_D_Ribose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H42N3O18P2" hasOnlySubstanceUnits="true" id="M_u3hga_XF_c" metaid="_8688a4a6-3274-4c07-b155-4025fa339e4e" name="M_u3hga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H42N3O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_adp_c" metaid="_2c5d4c58-1d75-4ae1-885b-ca295055afa8" name="ADP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O2" hasOnlySubstanceUnits="true" id="M_bz_e" metaid="_50d58e18-184f-4feb-a6bb-b7f585abcda2" name="M_bz_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H113N2O18P2" hasOnlySubstanceUnits="true" id="M_unagamu_c" metaid="_9d0cf216-7876-451e-a63a-64554bdc32c4" name="M_unagamu_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H113N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_e" metaid="_0c467055-569b-4120-a154-eb8045b1652b" name="M_met_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_c" metaid="_4742ba11-749b-45ba-831f-6756fc3f2680" name="M_met_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PS" hasOnlySubstanceUnits="true" id="M_pan4p_c" metaid="b39ca11a-6517-469c-838a-d90ebfc77437" name="Pantetheine_4__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H21N2O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O9P" hasOnlySubstanceUnits="true" id="M_ump_c" metaid="_52592ef6-e980-4115-a0ce-3be62c414f22" name="UMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_p" metaid="_43301271-49c5-439a-b48c-343af7c883ec" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam1p_c" metaid="ee099462-057f-40f2-9318-435b77e02ac5" name="N_Acetyl_D_glucosamine_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C84H149N2O39P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4HL_XF_c" metaid="_5f10e95f-0f73-4cb4-86f8-a423a42e26b4" name="M_kdo2lipid4HL_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C84H149N2O39P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnasecys_c" metaid="_43e9e8dc-27a9-45c7-a846-a9806ffc5900" name="tRNA_SeCys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdp4d6dg_c" metaid="c3c4a7d9-e30f-4081-a77a-b0f5247d5e59" name="dTDP_4_dehydro_6_deoxy_D_glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H22N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocddec5eACP_c" metaid="c3249e6e-3844-464e-912b-eaffa32b9b2e" name="3_oxo_cis_dodec_5_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H39N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56O3" hasOnlySubstanceUnits="true" id="M_2hpmhobq_c" metaid="e92b21fa-04e6-4466-8e88-54b6da43b2ec" name="2_Hexaprenyl_3_methyl_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H56O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_c" metaid="f4a97e17-4cd4-4c44-a820-68d123b6536e" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_e" metaid="cb3178e8-82df-4bfc-9bd3-2225d4f2deae" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_e" metaid="c49ceefe-cbb1-4c1f-b2c9-7d2be26c1725" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_c" metaid="_30287bb9-8205-4e45-936c-6b7ff079fb61" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H70O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_c" metaid="_80627c1f-2ab2-4b5e-b9ee-f3bace1053ad" name="M_ocdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_sufsesh_c" metaid="_8a50d7ae-12e1-458b-bca1-41d50528128f" name="M_sufsesh_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HS2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H41O7P1" hasOnlySubstanceUnits="true" id="M_1odecg3p_c" metaid="bc7afb5b-a544-4ac5-b596-28d4f53b5a73" name="1_octadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H41O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10PS" hasOnlySubstanceUnits="true" id="M_aps_c" metaid="e8f644aa-cf4e-4851-9b52-524f55800b88" name="Adenosine_5__phosphosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cl" hasOnlySubstanceUnits="true" id="M_cl_c" metaid="_460e0853-51f1-4911-9939-66ee68043783" name="Chloride" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cl</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_e" metaid="fa22814a-ff48-4484-925b-60b9d589e426" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10NO2S" hasOnlySubstanceUnits="true" id="M_met_D_p" metaid="_29bc905d-471c-422d-ac52-fb6b64907c9f" name="M_met_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_c" metaid="_7f917db6-f623-4384-ae7d-b478ab60e6e9" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_c" metaid="d2e6ca98-7ed8-4c5b-9b61-fdd33de2e076" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H54N7O17P3S" hasOnlySubstanceUnits="true" id="M_ddcacoa_c" metaid="_108bae10-3aa7-4e54-955e-3f76398c8f5c" name="Dodecanoyl_CoA__n_C12_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H54N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H70O10P1" hasOnlySubstanceUnits="true" id="M_pg161_p" metaid="_40f2b6ec-e609-48b0-a490-7f91812458f9" name="Phosphatidylglycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H70O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3" hasOnlySubstanceUnits="true" id="M_gln_L_p" metaid="_11575be7-e27d-4ba4-b151-c5045e19fccd" name="L_Glutamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu2_p" metaid="_4a0f9fdb-ba9d-4617-b1f5-84637d786267" name="Copper_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2" hasOnlySubstanceUnits="true" id="M_ocdcea_p" metaid="accd4a8b-5987-440e-a077-9adbb463d0ea" name="octadecenoate__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H33O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O" hasOnlySubstanceUnits="true" id="M_hxan_e" metaid="aad41c36-39a2-4627-9de3-54ebb9a099c0" name="Hypoxanthine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4N4O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocdcaACP_c" metaid="a99cb6e9-3d7b-4418-8e12-3e3eadb5e4ac" name="Octadecanoyl_ACP__n_C18_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H55N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H67N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdec7eg_c" metaid="cfed38fb-a6aa-4c04-925b-a8ddecbef47f" name="CDP_1_2_ditetradec_7_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H67N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O7P" hasOnlySubstanceUnits="true" id="M_2pg_c" metaid="e70b8811-d6b0-4409-805b-b6cb4cbcc792" name="D_Glycerate_2_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpgal_c" metaid="ca9477b5-955c-4986-8dda-a59e550e5e7a" name="UDPgalactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H22N2O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O10PRS" hasOnlySubstanceUnits="true" id="M_gmeACP_c" metaid="ddead12e-825c-49d7-aabf-988f35133766" name="Glutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_p" metaid="bdbe4468-697b-4df1-8745-7da05a39e022" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81N1O10P1" hasOnlySubstanceUnits="true" id="M_ps180_c" metaid="_8df23e87-1dbe-4a1a-aad2-a2499978d7bb" name="phosphatidylserine__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_c" metaid="_78dcf97b-b64a-4383-8155-483beeb01f07" name="Thymine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO6P" hasOnlySubstanceUnits="true" id="M_3ig3p_c" metaid="_4794eeab-2b3a-4e86-947e-a3668dd50e19" name="C___3_Indolyl__glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H64N7O17P3S" hasOnlySubstanceUnits="true" id="M_odecoa_c" metaid="_09cf7336-e84b-4f05-badd-7be76bcbabe8" name="Octadecenoyl_CoA__n_C18_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H64N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_c" metaid="_6d318b97-a47e-49aa-87cc-3ad6fb676344" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_4fe4s_c" metaid="ef85ce8a-599c-49c2-b934-52d0e2f16d6c" name="M_sufbcd_4fe4s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H4O2S10Fe4R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C68H104N12O38" hasOnlySubstanceUnits="true" id="M_murein3p3p_p" metaid="_9933264b-e15a-4ed1-a4f0-f4fc7c227565" name="two_linked_disacharide_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C68H104N12O38</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31O7P1" hasOnlySubstanceUnits="true" id="M_1tdec7eg3p_c" metaid="ab977643-263a-4a03-a254-bb852121a6e2" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_e" metaid="_83f27303-75f4-4d6e-8ac2-28eeb19db871" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_5aop_c" metaid="a32ed875-f60f-4312-961c-01fc0b55d16b" name="5_Amino_4_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_p" metaid="b8c96569-55bb-4c39-bfb6-94c7bdf53eda" name="M_thym_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_e" metaid="a3aecd07-6bf3-464b-8ac1-bdd59da7f49e" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_c" metaid="_9890bb12-45ac-4f4d-a19a-fc811557ae3c" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_2_c" metaid="_90683926-b866-41fe-80c1-98babccbacf6" name="Deoxyadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_c" metaid="_8f92af48-2761-440e-9022-9d3fa1cbc681" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H78O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_c" metaid="b71769b5-a14b-48f8-91d0-88bb3d343059" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O2" hasOnlySubstanceUnits="true" id="M_thym_e" metaid="_7f85071a-6a4f-43db-9823-8a031f2c7d41" name="M_thym_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O11PRS" hasOnlySubstanceUnits="true" id="M_hpmeACP_c" metaid="_94c28444-1421-443a-aba2-0691b5acec37" name="3_Hydroxypimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein4px4p_p" metaid="eeb327c2-4345-4f36-91b1-60518942ab25" name="two_disacharide_linked_murein_units__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H112N14O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2" hasOnlySubstanceUnits="true" id="M_4abut_p" metaid="_7bbf70a8-f779-47ec-a17e-4c489edf91d3" name="4_Aminobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O1" hasOnlySubstanceUnits="true" id="M_meoh_p" metaid="d5cde6e6-4478-4de3-a0a9-0fef3954603c" name="Methanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4O1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H78O10P1" hasOnlySubstanceUnits="true" id="M_pg181_p" metaid="_12290258-af5c-47c1-979d-c45053f67323" name="Phosphatidylglycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H78O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdec2eACP_c" metaid="b40796b5-d9da-41e2-8108-7ab4fac80089" name="trans_Dec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O2" hasOnlySubstanceUnits="true" id="M_2omph_c" metaid="_50c8fd8a-0b8d-4b9d-9f3f-7e73939896c7" name="2_Octaprenyl_6_methoxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H72O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H33N7O13P2S" hasOnlySubstanceUnits="true" id="M_dpcoa_c" metaid="_2114affe-c062-4904-a403-daf62352e50a" name="Dephospho_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H33N7O13P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_p" metaid="_215c8043-9dff-438d-a258-cec5f2bc47ac" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5NO4" hasOnlySubstanceUnits="true" id="M_23dhdp_c" metaid="_752884b5-3ccf-4ce5-b928-ef740b225ab0" name="2_3_Dihydrodipicolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_p" metaid="f961f514-f854-4ab7-a243-2b378a11a89f" name="M_lcts_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S" hasOnlySubstanceUnits="true" id="M_5mta_c" metaid="cbac2a4e-49f7-48a8-9add-029ce811ba89" name="5_Methylthioadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H15N5O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_c" metaid="_5f9ad7b0-8d3c-43cf-8a33-90e1eb710e57" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O7P2S" hasOnlySubstanceUnits="true" id="M_thmpp_c" metaid="_30903d62-892f-48e3-a1c0-6b6a72280043" name="Thiamine_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H16N4O7P2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_amp_c" metaid="_4fe6c29c-fecf-470c-be2a-a9bcf8656833" name="AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H60O5" hasOnlySubstanceUnits="true" id="M_12dgr140_c" metaid="_7e1e6be4-b6d5-4044-b0b9-2f04b2bea97a" name="1_2_Diacyl_sn_glycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H60O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2R" hasOnlySubstanceUnits="true" id="M_sertrna_c" metaid="_81f93249-c898-454e-98bd-866ce601f5ba" name="L_Seryl_tRNA_Ser_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H33N9O15P2" hasOnlySubstanceUnits="true" id="M_fadh2_c" metaid="_4041656b-e412-49f4-b816-7600ed0651ee" name="Flavin_adenine_dinucleotide_reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H33N9O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_lcts_c" metaid="_37a5c5d2-2f41-4400-b1e7-bcba04bb38d5" name="M_lcts_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O13P3" hasOnlySubstanceUnits="true" id="M_ahdt_c" metaid="_5035af71-197d-41f9-aa74-443f3358baaf" name="2_Amino_4_hydroxy_6__erythro_1_2_3_trihydroxypropyl_dihydropteridine_triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N5O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O14P3" hasOnlySubstanceUnits="true" id="M_dutp_c" metaid="_80fe83ce-be12-4f96-a6f6-a17511a22de4" name="dUTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O9PRS" hasOnlySubstanceUnits="true" id="M_3odecACP_c" metaid="a34c0d26-e907-4875-baf3-7229d06e1f16" name="3_Oxodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam6p_c" metaid="f0da3ccb-33da-4fb1-ac90-d48b92df0746" name="D_Glucosamine_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77O13P2" hasOnlySubstanceUnits="true" id="M_pgp181_p" metaid="af1769b8-8aed-4c2c-a532-e2aab8ffd559" name="Phosphatidylglycerophosphate__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prfp_c" metaid="fa867997-62a0-40f2-99a3-cf71a1fa8319" name="1__5_Phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_c" metaid="_474e6990-28d1-4ec8-9f01-356e9e7060cd" name="Succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_p" metaid="_4f51406a-ef1b-4d16-9d37-94c2adea606c" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O4" hasOnlySubstanceUnits="true" id="M_succ_p" metaid="_37f6347d-7051-42e9-a560-40c4bf52c173" name="Succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_p" metaid="fa6238b5-6319-4f16-8851-65f593e11a36" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_e" metaid="f6eae696-19ab-4dd8-af09-37528a564931" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6S" hasOnlySubstanceUnits="true" id="M_gthrd_p" metaid="a9635167-b7c7-4115-a2fa-95aa4914a33b" name="Reduced_glutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H116N2O29P2" hasOnlySubstanceUnits="true" id="M_hlipidA_XF_c" metaid="cde26a11-d4db-4032-a434-28c5ec93113f" name="M_hlipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H116N2O29P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H50N7O17P3S" hasOnlySubstanceUnits="true" id="M_dcacoa_c" metaid="_793f8d72-7a4d-47d7-98e2-bcbb112cd0b2" name="Decanoyl_CoA__n_C10_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H50N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_c" metaid="_9ba9d16d-988a-4711-970f-57a94cce6ea5" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_gal_e" metaid="_52e47f01-5ef5-4afe-bfda-be27bfeca562" name="D_Galactose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_c" metaid="_232f0d8c-8b0a-4749-a7ca-5d12734bd206" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_2obut_c" metaid="ee189109-cd3b-4543-81a6-b72eefb96c9d" name="2_Oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_c" metaid="_40067cd7-167d-4fba-a233-0883aa18794d" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5N3O" hasOnlySubstanceUnits="true" id="M_csn_c" metaid="_0a157836-f6dd-476a-b4fb-6fe5231d5451" name="Cytosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="K" hasOnlySubstanceUnits="true" id="M_k_e" metaid="_806bd4c5-c3bb-413a-bf66-963a22bfb2f4" name="potassium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: K</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_g3ps_e" metaid="_9df4095e-2177-43b9-b941-0114c6f850c6" name="Glycerophosphoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_ipdp_c" metaid="_57069a2f-f263-4d87-b32a-03f2a90a3ce3" name="Isopentenyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H23N2O8PRS" hasOnlySubstanceUnits="true" id="M_acACP_c" metaid="_7a08b1a3-ec7b-4b70-acd9-8907b1ab9e9f" name="Acetyl_ACP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H23N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C111H167N21O58" hasOnlySubstanceUnits="true" id="M_murein4px4px4p_p" metaid="_7034283c-795d-4c7c-8dd9-c73ebfa3af89" name="three_disacharide_linked_murein_units__tetrapeptide_crosslinked_tetrapeptide__A2pm__D_ala____tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C111H167N21O58</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H54FeN4O6" hasOnlySubstanceUnits="true" id="M_hemeA_1_c" metaid="_8dafc607-8c60-4144-bb61-e69d7933af41" name="M_hemeA_1_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H54FeN4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_c" metaid="_99315983-b783-4d15-a64c-bb7c50508372" name="D_Glyceraldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_e" metaid="_3f836984-888d-442d-a80d-124ea9653d5e" name="M_mal_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_e" metaid="_52131b8a-027f-4a1b-b1dc-4307a0d9d7c4" name="M_glyald_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_p" metaid="_73857529-3fa7-459d-b32c-74dc47eeba72" name="M_hco3_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_p" metaid="b66491f9-b558-456f-84fe-f45205b1a417" name="M_mal_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16N3O6SSe" hasOnlySubstanceUnits="true" id="M_gslnt_c" metaid="f5b6bdf7-9148-4ce7-bd50-24127c890289" name="M_gslnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H16N3O6SSe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N5O" hasOnlySubstanceUnits="true" id="M_preq0_c" metaid="b309cee8-6e97-4114-96bd-93c5d0ba25cb" name="7_cyano_7_carbaguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_D_c" metaid="_458861eb-3197-4592-90fe-ca6bd9aa0f88" name="M_mal_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O9P" hasOnlySubstanceUnits="true" id="M_6pgl_c" metaid="ee88dbde-4073-4637-b00b-0767b52d584b" name="6_phospho_D_glucono_1_5_lactone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O6" hasOnlySubstanceUnits="true" id="M_acon_C_c" metaid="_983551f4-31f2-4080-ae0b-846e98ef4a74" name="cis_Aconitate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H3O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_c" metaid="ed0f82b6-0a1a-4986-a913-e2835731af7d" name="L_methionine_R_sulfoxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O2R" hasOnlySubstanceUnits="true" id="M_asntrna_c" metaid="ee82cb7d-b294-4e8f-bcbd-9d89b010173f" name="L_Asparaginyl_tRNA_Asn_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8N2O2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_e" metaid="d6df6cfa-f5fd-4e6a-bb9f-54c0f495e3fd" name="M_metsox_R_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H18N4O6" hasOnlySubstanceUnits="true" id="M_dmlz_c" metaid="cb34b92e-e342-4791-b821-d9e212d8605d" name="6_7_Dimethyl_8__1_D_ribityl_lumazine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H18N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_e" metaid="_4a556ba2-0ee3-43e7-a4f8-7546de1ffafa" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H7O4" hasOnlySubstanceUnits="true" id="M_34hpp_c" metaid="c9300efc-7e75-456f-b6a3-aea4c65b139d" name="3__4_Hydroxyphenyl_pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="RCu11" hasOnlySubstanceUnits="true" id="M_11cu2s_CopA_p" metaid="_997bc6c2-f19f-44e1-b525-322eb1f375bb" name="Protein_CopA_bounded_to_11_atoms_of_copper" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: RCu11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_c" metaid="_1fb155a7-e27d-4f0f-8fb7-10e208dcab56" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12NO6" hasOnlySubstanceUnits="true" id="M_suchms_c" metaid="_3f394db0-1c6a-4775-9589-e5b9a86fe816" name="M_suchms_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12NO6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Zn" hasOnlySubstanceUnits="true" id="M_zn2_p" metaid="_3f542a6b-e6f5-429b-a313-c9d62a9fe0c9" name="Zinc" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Zn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7N2O5P" hasOnlySubstanceUnits="true" id="M_imacp_c" metaid="aabf93be-f89c-4836-a9ec-ea62f62bbbc9" name="3__Imidazol_4_yl__2_oxopropyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H7N2O5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_e" metaid="_83d73a25-8317-4dca-910b-370f23535b9c" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7N4O4" hasOnlySubstanceUnits="true" id="M_alltt_c" metaid="eee9822b-fa76-413e-9f94-233797c284c6" name="Allantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_c" metaid="_4c0b1829-431b-453e-a0be-2f3caf81bfe3" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O8" hasOnlySubstanceUnits="true" id="M_kdo_c" metaid="_83255d96-44c0-4eac-9047-d321d1883508" name="3_Deoxy_D_manno_2_octulosonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO4" hasOnlySubstanceUnits="true" id="M_4hthr_c" metaid="_2f970658-3405-49d2-827e-cda31ac3c580" name="M_4hthr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H37O7P" hasOnlySubstanceUnits="true" id="M_1hdecg3p_c" metaid="e94be5d7-f496-4f2a-8593-3bcfc9c2d1ce" name="1_hexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H37O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" hasOnlySubstanceUnits="true" id="M_na1_p" metaid="_67530b6e-a8f1-458c-b939-90f3fc424138" name="Sodium" sboTerm="SBO:0000240"/> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O8PRS" hasOnlySubstanceUnits="true" id="M_cddec5eACP_c" metaid="_7d9bf15a-c064-4218-a701-d71b4206b45f" name="cis_dodec_5_enoyl__acyl_carrier_protein___n_C12_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15NO8P" hasOnlySubstanceUnits="true" id="M_4ppan_c" metaid="_32fb951f-9d39-48a0-bf99-b42cd73fcf37" name="D_4__Phosphopantothenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H15NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udp4kp_c" metaid="_267c7469-631b-4806-b114-f73873b2ca8f" name="UDP_4_keto_pentose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO8" hasOnlySubstanceUnits="true" id="M_sl2a6o_c" metaid="c53714e9-99bf-443b-a309-9745c89bcdac" name="N_Succinyl_2_L_amino_6_oxoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O7P" hasOnlySubstanceUnits="true" id="M_dgmp_c" metaid="_88eff2be-703f-4c42-9026-2053283954d6" name="dGMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_R_L_p" metaid="_1a7ecca6-839c-43db-a508-6bb4abbdeec9" name="M_metsox_R_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_c" metaid="_912e1495-951c-4316-88ef-1f633ce29a60" name="1_2_Diacyl_sn_glycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H76O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16N4O6" hasOnlySubstanceUnits="true" id="M_4r5au_c" metaid="f669c91e-8061-44ca-aa0c-0aa962f5d915" name="4__1_D_Ribitylamino__5_aminouracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H16N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NOR" hasOnlySubstanceUnits="true" id="M_iletrna_c" metaid="_6b19678e-6701-474f-9abc-29755a992a42" name="L_Isoleucyl_tRNA_Ile_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H35N7O19P3S" hasOnlySubstanceUnits="true" id="M_succoa_c" metaid="_09209ea9-8108-4d26-8459-40fe64cf3fb6" name="Succinyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H35N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H76O5" hasOnlySubstanceUnits="true" id="M_12dgr180_p" metaid="_00a128f5-2674-4f2d-8a4c-aeb6c8a5bc36" name="M_12dgr180_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H76O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_e" metaid="_75ad0a0a-5032-4e7e-bb14-0333fceb16a6" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O22P5" hasOnlySubstanceUnits="true" id="M_ap5a_c" metaid="_84f0382a-a19e-4f6c-9e95-ad5376ac7502" name="P1_P5_Bis_5__adenosyl__pentaphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O22P5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_inost_c" metaid="de6efc63-7434-4c4c-ae58-746a80de0478" name="myo_Inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hddecACP_c" metaid="_80a29bd8-d2b9-471b-bb2b-956596ab1831" name="R__3_Hydroxydodecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H43N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N7O6" hasOnlySubstanceUnits="true" id="M_5mthf_c" metaid="d2df0672-3e3e-4352-aada-dde3e5ab2c86" name="5_Methyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_glyald_p" metaid="_61ea2ba8-0f32-4126-96e8-4b79cae44de2" name="M_glyald_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_c" metaid="f323515f-6b4d-4f7b-9856-3eefd33b670e" name="Bicarbonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O8P" hasOnlySubstanceUnits="true" id="M_gar_c" metaid="fd54baee-ee54-4189-b660-6d95f5456c1b" name="N1__5_Phospho_D_ribosyl_glycinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="HCO3" hasOnlySubstanceUnits="true" id="M_hco3_e" metaid="_61d939b1-ed1f-43ce-9e03-a4c08e8bc887" name="M_hco3_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HCO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O9PRS" hasOnlySubstanceUnits="true" id="M_3haACP_c" metaid="_033de923-3d72-446f-8bf6-1ceeaf457028" name="3R__3_Hydroxyacyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H27N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3" hasOnlySubstanceUnits="true" id="M_dha_c" metaid="a0bfad08-cbfb-4f6d-806f-0f4ff1765afa" name="M_dha_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_e" metaid="bd99a476-4b2e-4522-a3e4-6f25d1489e01" name="M_quin_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_p" metaid="_7d39ad76-0d65-4592-89a3-0c21f052f029" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_c" metaid="_77223863-1562-4b4d-8f6e-dd771c950861" name="Urea" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H21N2O2" hasOnlySubstanceUnits="true" id="M_dann_c" metaid="_2352f11e-ba6f-4ddd-a073-d343b40a6112" name="7_8_Diaminononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H21N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_D_c" metaid="aeb53456-a522-4845-a201-588cd0c2e42a" name="D_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C44H75N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdhdec9eg_c" metaid="_43d30dbe-5f11-4ef3-953f-e8f9ea4f67b2" name="CDP_1_2_dihexadec_9_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C44H75N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_p" metaid="_8fc5fa9f-9288-4b97-99a7-dff2a6505342" name="M_quin_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16N2O7" hasOnlySubstanceUnits="true" id="M_sl26da_c" metaid="_41ef3c64-c064-4cd4-92ed-418079560801" name="N_Succinyl_LL_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H16N2O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S" hasOnlySubstanceUnits="true" id="M_dhmtp_c" metaid="ac881e6e-fec6-4756-b044-e561c508a25e" name="M_dhmtp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_c" metaid="_0afbc90f-9b1c-452c-8ad7-a4429280ce87" name="1_2_Diacyl_sn_glycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H68O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_c" metaid="_16643f8f-c679-4729-9aa3-9f1f5f62564f" name="L_Methionine_Sulfoxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O4" hasOnlySubstanceUnits="true" id="M_23dhmp_c" metaid="c4a26a7f-7396-4c9b-b382-953bea50f73f" name="R__2_3_Dihydroxy_3_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_e" metaid="_49986ea5-6b53-4473-b693-50ce26c6e9e8" name="M_metsox_S_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O" hasOnlySubstanceUnits="true" id="M_urea_p" metaid="_43c3bda0-062b-47b6-a12b-f30f608bbe0d" name="Urea" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH4N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_c" metaid="c188f9da-a9ab-4218-9ddf-0a1bf83e6f7c" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H55O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO3R" hasOnlySubstanceUnits="true" id="M_asptrna_c" metaid="_1bc00e1f-f2fd-4a62-9bba-e097ba867cb0" name="L_Aspartyl_tRNA_Asp_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO3R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3" hasOnlySubstanceUnits="true" id="M_3mob_c" metaid="_026bee60-b896-4ae9-ac99-18069021688d" name="3_Methyl_2_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N5O7P" hasOnlySubstanceUnits="true" id="M_dhpmp_c" metaid="f228857b-3f2f-4b3f-83ca-0044dd00329f" name="M_dhpmp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N5O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N5O16P2" hasOnlySubstanceUnits="true" id="M_adphep_LD_c" metaid="_043aff48-157c-40a7-820d-8b79c5d4c269" name="ADP_L_glycero_D_manno_heptose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N5O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_c" metaid="_8193484f-1f9f-4cde-8c77-a264ef32b72c" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_L_c" metaid="_9ea7f04a-68b4-4f04-b027-8a9a1d987e35" name="M_xylu_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_e" metaid="_85bf543c-dbf3-40b8-aec0-f8867d1a9759" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H55O8P1" hasOnlySubstanceUnits="true" id="M_pa141_p" metaid="f110f5d8-f27b-4fb9-86de-ac4db73ccf6d" name="1_2_ditetradec_7_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H55O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H62N7O17P3S" hasOnlySubstanceUnits="true" id="M_pmtcoa_c" metaid="a2492e1d-7658-447e-bc3f-6f124b6498ca" name="Palmitoyl_CoA__n_C16_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H62N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_dcaACP_c" metaid="_39d6026b-bd6c-43e1-819e-3e37a4d38279" name="Decanoyl_ACP__n_C10_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_e" metaid="_06681255-ca55-4d6e-a318-5146048fe430" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcmrs7eACP_c" metaid="_991b9738-33dd-4908-9225-f410485a340b" name="R__3_hydroxy_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2dhp_c" metaid="_35e85121-8948-4271-b5da-3a8ee3131c50" name="2_Dehydropantoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_adn_c" metaid="_7ee4933b-44b9-4ef3-b32f-6eb2879a4af8" name="Adenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6" hasOnlySubstanceUnits="true" id="M_quin_c" metaid="_0f6f353d-ba4b-494d-90c0-1ed3ad6ee4e1" name="M_quin_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_c" metaid="e47016c7-19a2-4935-ab82-c5eb220b89d0" name="Ethanol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H6O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_p" metaid="d9887695-6657-4c5f-bb99-08f7125c9e82" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O" hasOnlySubstanceUnits="true" id="M_2oph_c" metaid="d49cb102-3bd8-47e0-bf24-9cfa84e5179e" name="2_Octaprenylphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C46H70O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_c" metaid="e438fed2-aa4e-4393-abde-490c77c49a61" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O" hasOnlySubstanceUnits="true" id="M_4ahmmp_c" metaid="ce138066-f4d6-4c15-9b02-8caddd0dff9e" name="4_Amino_5_hydroxymethyl_2_methylpyrimidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2" hasOnlySubstanceUnits="true" id="M_val_L_e" metaid="_46ca55d5-b6be-4c78-9219-c02c32c4dc16" name="L_Valine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_e" metaid="e73d084e-64bf-40b1-b7b4-945299e2f7c9" name="M_fuc_L_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O14P2" hasOnlySubstanceUnits="true" id="M_nad_c" metaid="bb1b199e-2969-485a-a88c-1ec5f0179d20" name="Nicotinamide_adenine_dinucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H26N7O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5" hasOnlySubstanceUnits="true" id="M_fuc_L_c" metaid="_355a215d-4db8-4832-8fb8-ca1ab01f0eda" name="M_fuc_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO3" hasOnlySubstanceUnits="true" id="M_aso3_c" metaid="_5453d5d0-a66b-49bb-b42a-eabca45bc40c" name="Arsenite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: AsO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_2ddg6p_c" metaid="_114fd6c5-31ba-4155-b85e-21f7a01dd1c9" name="M_2ddg6p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C77H119N15O41" hasOnlySubstanceUnits="true" id="M_murein5p4p_p" metaid="_9dc1160f-ee56-4e10-a93c-c065af2fb172" name="two_linked_disacharide_pentapeptide_and_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C77H119N15O41</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27O2" hasOnlySubstanceUnits="true" id="M_ttdca_p" metaid="f632defc-455c-460e-8b73-ffab54254999" name="tetradecanoate__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H27O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O7" hasOnlySubstanceUnits="true" id="M_5dglcn_c" metaid="d17cd973-347c-4f92-808f-f3db2829a900" name="5_Dehydro_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H156O17P2" hasOnlySubstanceUnits="true" id="M_clpn180_p" metaid="_070e315e-74cc-433c-867e-b5840ddb5f12" name="cardiolipin__tetraoctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C81H156O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O5" hasOnlySubstanceUnits="true" id="M_3c2hmp_c" metaid="_177a430c-8868-472c-893e-1beb2488d67f" name="3_Carboxy_2_hydroxy_4_methylpentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O15P2" hasOnlySubstanceUnits="true" id="M_udpLa4n_c" metaid="ce336872-4e86-448f-8eff-547a30ec3470" name="M_udpLa4n_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S" hasOnlySubstanceUnits="true" id="M_metsox_S_L_p" metaid="fa47220e-2432-42c1-9b38-149e2ebb40e0" name="M_metsox_S_L_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H68O5" hasOnlySubstanceUnits="true" id="M_12dgr160_p" metaid="e162bccf-b25d-40c0-b12e-e97ff2edd2ff" name="M_12dgr160_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H68O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H53NO12P" hasOnlySubstanceUnits="true" id="M_lipidX_XF_c" metaid="b1c41bb2-0646-4bcc-9e04-a1133485d7d4" name="M_lipidX_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C28H53NO12P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_e" metaid="_47801743-fdfb-408d-a8a7-9787d1283699" name="novobiocin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H36N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5caiz_c" metaid="_6c9e98ef-7d1e-44ce-b4a9-42c3263c2ab8" name="5_phosphoribosyl_5_carboxyaminoimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N3O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O" hasOnlySubstanceUnits="true" id="M_etoh_p" metaid="_83b31a68-c565-4434-910e-c0c6359fff49" name="M_etoh_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H6O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_tpalm2eACP_c" metaid="_22e5a1e3-e9c3-4ff0-90da-9ab71904dc41" name="trans_Hexadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O4" hasOnlySubstanceUnits="true" id="M_forglu_c" metaid="e0b032b0-6ff3-46ef-b5ab-71288f24bc8d" name="N_Formimidoyl_L_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N2O3" hasOnlySubstanceUnits="true" id="M_progly_c" metaid="_691ebdf0-21c6-4598-a1ad-36baaae52159" name="M_progly_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N3O18P2" hasOnlySubstanceUnits="true" id="M_uacmamu_c" metaid="a6428724-467c-4601-8651-14050b290d18" name="UDP_N_acetyl_D_mannosaminouronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H22N3O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO7P" hasOnlySubstanceUnits="true" id="M_pram_c" metaid="_85c62393-413d-4893-8c01-3c328c75978f" name="5_Phospho_beta_D_ribosylamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H43N3O19P2" hasOnlySubstanceUnits="true" id="M_u3aga_XF_c" metaid="bdcddf87-891e-48b4-ada6-61140f93ac48" name="M_u3aga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H43N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H36N2O11" hasOnlySubstanceUnits="true" id="M_novbcn_p" metaid="_352b1076-1234-4942-9297-1cd9f37bc16d" name="novobiocin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H36N2O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O4S2R4" hasOnlySubstanceUnits="true" id="M_trdrd_c" metaid="c0f2e38a-aeaf-4c60-9faa-7d994d090104" name="Reduced_thioredoxin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H14N4O4S2R4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3OR" hasOnlySubstanceUnits="true" id="M_histrna_c" metaid="_46576463-2ab2-47d6-bc19-ece0396b696e" name="L_Histidyl_tRNA_His_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N3OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H24N2O15P2" hasOnlySubstanceUnits="true" id="M_dtdprmn_c" metaid="_7248c5f2-5536-4fa6-8885-a1f09fd313f4" name="dTDP_L_rhamnose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H24N2O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_e" metaid="e5935128-9d10-4545-bc60-df7762d32050" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_c" metaid="_60cffd2a-0723-46c3-b847-76149ed8ba06" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_2ddglcn_c" metaid="_0c68e62b-a2ad-4ab3-a62d-59eea5cf7389" name="2_Dehydro_3_deoxy_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H71N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdtdecg_c" metaid="d172f13d-c895-4c2c-b6e8-bbe229008d13" name="CDP_1_2_ditetradecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H71N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O17P4" hasOnlySubstanceUnits="true" id="M_ppgpp_c" metaid="fbbed2b2-bc7f-463e-8a61-dedfb2f17969" name="Guanosine_3__5__bis_diphosphate_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O17P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5" hasOnlySubstanceUnits="true" id="M_cytd_c" metaid="d7071268-659c-44cc-9d26-6f94bc593872" name="Cytidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N3O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ara5p_c" metaid="e94b938e-eac2-49a5-b775-b6b2ada4953a" name="D_Arabinose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O10P2" hasOnlySubstanceUnits="true" id="M_dgdp_c" metaid="f40b6e12-896e-42da-ad86-290ed78876b0" name="dGDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="R" hasOnlySubstanceUnits="true" id="M_etfox_c" metaid="_1d6c03df-9b36-4f17-99aa-1b3c105d8f19" name="Electron_transfer_flavoprotein_oxidized" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35N2O8PRS" hasOnlySubstanceUnits="true" id="M_ocACP_c" metaid="a12506fc-a8d8-4489-83e9-6eca6690bad8" name="Octanoyl_ACP__n_C8_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2" hasOnlySubstanceUnits="true" id="M_pro_L_p" metaid="_3aa4181e-df32-468a-996f-8ee889f22e76" name="L_Proline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H14N5O11P" hasOnlySubstanceUnits="true" id="M_dcamp_c" metaid="_3e36d473-0360-46f6-bea3-6e69921f5b5d" name="N6__1_2_Dicarboxyethyl__AMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H14N5O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_chor_c" metaid="_861501cd-bfaf-4379-af20-55f06b55f048" name="chorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H17NO11P" hasOnlySubstanceUnits="true" id="M_acmum6p_c" metaid="a7f2ca1c-7335-40a7-a4c9-40213dffd6c9" name="N_acetylmuramate_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H17NO11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_sucsal_c" metaid="_5bb109ef-224e-4128-9d2a-82069c112e24" name="Succinic_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_p" metaid="_2b110650-1ab5-4691-97e0-2452fdb6ee7f" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhmpt_c" metaid="_9d286888-17b3-45e3-8d35-29df68cb72e1" name="M_dhmpt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="P2HO7" hasOnlySubstanceUnits="true" id="M_ppi_c" metaid="_86a426b1-c2d9-4c3c-93bc-3c02dc0df33f" name="Diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: P2HO7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3" hasOnlySubstanceUnits="true" id="M_asn_L_c" metaid="b6b0aa02-7dd9-4612-be46-f310627219fa" name="L_Asparagine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10O10P" hasOnlySubstanceUnits="true" id="M_2dda7p_c" metaid="_3886d780-2882-46ea-a946-49d3ccb7923c" name="2_Dehydro_3_deoxy_D_arabino_heptonate_7_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_p" metaid="_441bd501-469e-41d8-b5ad-a13ace02d988" name="M_agm_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_c" metaid="_21744346-1c03-4851-8278-ffdcbdc40d47" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H33O7P" hasOnlySubstanceUnits="true" id="M_1tdecg3p_c" metaid="_3b77a3b0-f42e-4935-b884-401ffdffec0a" name="1_tetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H33O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_e" metaid="f70b5bb1-2240-48c1-a529-dd502abf1328" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O3" hasOnlySubstanceUnits="true" id="M_alaala_c" metaid="_9f439b98-142d-4805-8d78-4ff57bfc2251" name="D_Alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Co" hasOnlySubstanceUnits="true" id="M_cobalt2_p" metaid="_374b1ce7-42eb-4fc3-a848-cd0b91f8727f" name="Cobalt_Co2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Co</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hpalmACP_c" metaid="_591f9614-19ff-4312-b06f-e9a075408c77" name="R_3_hydroxypalmitoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H40N4O8" hasOnlySubstanceUnits="true" id="M_cpppg3_c" metaid="a0e3b7c5-adee-4995-8dcd-0f8e09571690" name="Coproporphyrinogen_III" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C36H40N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O9P" hasOnlySubstanceUnits="true" id="M_5apru_c" metaid="_88bc271c-57ea-4ef6-b7fa-972715ec43f4" name="5_Amino_6__5__phosphoribosylamino_uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H27N2O8PRS" hasOnlySubstanceUnits="true" id="M_butACP_c" metaid="_17ce6730-5fbe-4b03-91a1-82b6ca8b65d1" name="Butyryl_ACP__n_C4_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H27N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7O2" hasOnlySubstanceUnits="true" id="M_pac_c" metaid="d0773256-1447-4dbc-aaf0-41ad8a833922" name="Phenylacetic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O6" hasOnlySubstanceUnits="true" id="M_pphn_c" metaid="eac503bd-6aef-46b3-9533-9b26f1f8c190" name="Prephenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaile_c" metaid="e4d6442b-ae1e-436b-8f82-0baeedc19d5d" name="tRNA_Ile_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H87N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodecg_c" metaid="_81e152a5-a783-4702-8f88-e73bf5766026" name="CDP_1_2_dioctadecanoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H87N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO3" hasOnlySubstanceUnits="true" id="M_2amsa_c" metaid="_207bcba1-43b4-459f-a665-42b837a9ff00" name="2_Aminomalonate_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_p" metaid="_42b77eb6-d10c-45a7-ac8c-1518b2ee7787" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_e" metaid="_26554b8f-fc5f-42e3-a5a2-22d5acae17b6" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_c" metaid="a5c2ad58-768a-4217-812c-eb0b377dc6d2" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO3" hasOnlySubstanceUnits="true" id="M_8aonn_c" metaid="_5e5dd73e-e9b3-4ad5-97e3-36dbba07eac7" name="8_Amino_7_oxononanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H17NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H60N7O17P3S" hasOnlySubstanceUnits="true" id="M_hdcoa_c" metaid="ab7c9567-6b41-46ec-8ca0-9208c5931875" name="Hexadecenoyl_CoA__n_C16_1CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H60N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_e" metaid="_5cddf336-5581-454d-a420-15eb05f6f669" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9N5O2" hasOnlySubstanceUnits="true" id="M_6hmhpt_c" metaid="_099a49ea-bc36-4aa8-8ea5-7a5fc7abdd76" name="6_hydroxymethyl_dihydropterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9N5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2" hasOnlySubstanceUnits="true" id="M_h2o2_c" metaid="d3edff3f-0965-4524-988e-e012dd269a53" name="Hydrogen_peroxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N4" hasOnlySubstanceUnits="true" id="M_agm_c" metaid="e5d12b90-0e92-4296-99a1-4fa488158079" name="Agmatine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H19N7O6" hasOnlySubstanceUnits="true" id="M_dhf_c" metaid="_0cdde813-73c0-4312-a5ac-3270f214d9dd" name="7_8_Dihydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H19N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H61N1O10P1" hasOnlySubstanceUnits="true" id="M_ps141_c" metaid="d979247f-71a8-407d-bc8e-9683a02c94fb" name="phosphatidylserine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H61N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O4" hasOnlySubstanceUnits="true" id="M_ppbng_c" metaid="_59903941-7a27-49b5-a881-95339159efd4" name="Porphobilinogen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Cu" hasOnlySubstanceUnits="true" id="M_cu_p" metaid="e8bcc9b6-666f-4fc5-85b6-a38ecd155920" name="Copper_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Cu</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28N3O19P2" hasOnlySubstanceUnits="true" id="M_uamr_c" metaid="_7aedc4d6-d209-4d7a-9c88-bdf456a7a1a8" name="UDP_N_acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H28N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N5O15P2" hasOnlySubstanceUnits="true" id="M_prlp_c" metaid="b905b0c2-fac2-411a-a2bf-d1590df284b5" name="5___5_phospho_1_deoxyribulos_1_ylamino_methylideneamino__1__5_phosphoribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N5O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C32H38N7O19P3S" hasOnlySubstanceUnits="true" id="M_14dhncoa_c" metaid="_68633470-e8bf-451e-8dfd-33ed36f1747c" name="M_14dhncoa_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C32H38N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_p" metaid="_9b4632b8-c810-4aa9-bcef-4dd8c6dac22a" name="M_rib_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H1O10P3" hasOnlySubstanceUnits="true" id="M_pppi_c" metaid="_20ac260f-64a1-48ce-95b8-612167d825e9" name="Inorganic_triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H1O10P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H74O4" hasOnlySubstanceUnits="true" id="M_q8_c" metaid="_713ced97-3ec8-4988-9d3e-4b6f02e22aeb" name="Ubiquinone_8" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H74O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_c" metaid="b609e0d5-8769-49ee-af1c-6bd774cc1742" name="D_Ribose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_rib_D_e" metaid="_7fe4e843-8b2e-4a79-9c69-113790e3fbd3" name="M_rib_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H33N4O20P2" hasOnlySubstanceUnits="true" id="M_uama_c" metaid="e88b32e9-3ab7-4339-9dac-ee5d6103e7bd" name="UDP_N_acetylmuramoyl_L_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H33N4O20P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O5" hasOnlySubstanceUnits="true" id="M_dkdepiins_c" metaid="_57aa188e-b0ff-4aa5-bf0a-0f5ade5ba851" name="D_2_3_diketo_4_deoxy_epi_inositol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO5" hasOnlySubstanceUnits="true" id="M_acglu_c" metaid="_71143921-2770-4402-81e5-ab47f3ce3c7c" name="N_Acetyl_L_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H112N14O39" hasOnlySubstanceUnits="true" id="M_murein5px3p_p" metaid="_9398569c-4242-4675-8c1e-cf6e06b7b4d5" name="two_disacharide_linked_murein_units__pentapeptide_corsslinked_tripeptide__A2pm__A2pm___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H112N14O39</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_p" metaid="_4270b066-041a-4f59-8667-d54dd587d40e" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H16N2" hasOnlySubstanceUnits="true" id="M_15dap_c" metaid="_39242362-797d-43b7-9196-266844627539" name="1_5_Diaminopentane" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H16N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10NO5" hasOnlySubstanceUnits="true" id="M_4adcho_c" metaid="dfc3c1be-3f1c-46e7-baae-871822414165" name="4_amino_4_deoxychorismate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H10NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_c" metaid="_013a03d1-ca68-44fd-a28c-d3e27ab6b81b" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O8P" hasOnlySubstanceUnits="true" id="M_dump_c" metaid="_90502e6c-c63e-4585-872c-71a131527779" name="dUMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2" hasOnlySubstanceUnits="true" id="M_ocdca_e" metaid="_01d7b1e3-4e48-4381-aa07-2bfafb8091e3" name="octadecanoate__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H35O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S" hasOnlySubstanceUnits="true" id="M_met_L_p" metaid="_31660c24-6d1e-44f1-901e-9d1e1a6fd1bd" name="L_Methionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2" hasOnlySubstanceUnits="true" id="M_phe_L_c" metaid="efb6a520-6566-47f5-97e2-6b479ac974a7" name="L_Phenylalanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8N2" hasOnlySubstanceUnits="true" id="M_ind3acnl_c" metaid="_8f6328bd-b54a-481c-ae9a-d62bbec59141" name="Indole_3_acetonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H8N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO8P" hasOnlySubstanceUnits="true" id="M_gam1p_c" metaid="d5721ea7-3c6b-4522-af59-b79d2ccc5ea0" name="D_Glucosamine_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C46H70O2" hasOnlySubstanceUnits="true" id="M_2ohph_c" metaid="_0fdfb462-13a9-4101-9ec0-697b8a86cb64" name="2_Octaprenyl_6_hydroxyphenol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C46H70O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_c" metaid="fd43a421-7afe-430a-b14b-75d2b355a298" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H78N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N2O4" hasOnlySubstanceUnits="true" id="M_dhor_S_c" metaid="_421dc086-7ce2-4b8d-9030-1a5c923a7b2b" name="S__Dihydroorotate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H5N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O9P" hasOnlySubstanceUnits="true" id="M_6pddgluc_c" metaid="_2793caa9-dd17-4761-aa7a-a6efa7a36fac" name="6_phospho_5_dehydro_2_deoxy_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H21N7O6" hasOnlySubstanceUnits="true" id="M_thf_c" metaid="c7211891-9bf2-4e60-b017-af0d573d8261" name="5_6_7_8_Tetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H21N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H78N1O8P1" hasOnlySubstanceUnits="true" id="M_pe181_p" metaid="_2b926724-e5fb-40cb-8651-d6b9e7712f48" name="phosphatidylethanolamine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H78N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_p" metaid="bbc8cd77-7423-4cba-9801-a0333bfb5efe" name="Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_p" metaid="c38ad4b2-1917-4507-ac64-0f8d0800ea51" name="doxorubicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H29NO11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H17N2O7P" hasOnlySubstanceUnits="true" id="M_5prdmbz_c" metaid="_31322133-ee94-4555-bdbc-0ce4d1fcaebc" name="N1__5_Phospho_alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H17N2O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H37N2O8PRS" hasOnlySubstanceUnits="true" id="M_cdec3eACP_c" metaid="_55282680-fafe-4f12-a120-486dd25a84e0" name="cis_dec_3_enoyl__acyl_carrier_protein___n_C10_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H37N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hcvac11eACP_c" metaid="_9137c6a2-dc9d-4d8f-a838-f0326b61f795" name="R__3_hydroxy_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_p" metaid="ff503e73-c9f2-4b3c-8775-6bc323cb4be2" name="fusidic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H48O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_e" metaid="_145ff66e-ac94-4a8c-a834-024f1c35ee98" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H23N3O14P2" hasOnlySubstanceUnits="true" id="M_4c2me_c" metaid="_294e9ce7-1a62-4f47-b794-aa14f1cd97c8" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H23N3O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_c" metaid="_10ffd07d-57bf-4f7b-ad24-9f3742897e53" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9O5" hasOnlySubstanceUnits="true" id="M_skm_c" metaid="f1c19d7a-3ba5-48c5-be9b-4107b1b8dced" name="Shikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4" hasOnlySubstanceUnits="true" id="M_acser_c" metaid="_7a0e7d9e-ac6c-47c6-b80e-7cffd61fe6c4" name="O_Acetyl_L_serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_c" metaid="_69cc85e7-8d6e-49ce-8b76-0e4e45449467" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H58O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H26N3O19P2" hasOnlySubstanceUnits="true" id="M_uaccg_c" metaid="_37ec534f-d7ca-48a3-9fe9-c7f96048cb01" name="UDP_N_acetyl_3_O__1_carboxyvinyl__D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H26N3O19P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_p" metaid="fe0dbd2d-c340-4ad2-864f-963bfd9fe175" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H67O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9O10P" hasOnlySubstanceUnits="true" id="M_3psme_c" metaid="d94b5739-b97f-4b86-8b80-835b55bdd053" name="5_O__1_Carboxyvinyl__3_phosphoshikimate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H9O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnacys_c" metaid="_90505ec1-a563-4122-bdd0-896e9288e5ad" name="tRNA_Cys_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H15N4O12P" hasOnlySubstanceUnits="true" id="M_25aics_c" metaid="c67d6700-c935-4ec0-9260-96c100b30df9" name="S__2__5_Amino_1__5_phospho_D_ribosyl_imidazole_4_carboxamido_succinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H15N4O12P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H29NO11" hasOnlySubstanceUnits="true" id="M_doxrbcn_e" metaid="_0762590e-2935-478c-8104-b4a1dc326bcf" name="doxorubicin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H29NO11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4" hasOnlySubstanceUnits="true" id="M_dhnpt_c" metaid="d54cfcb8-dc3a-4021-8796-53a7230eb806" name="Dihydroneopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11" hasOnlySubstanceUnits="true" id="M_tre_e" metaid="b4805ee3-69b6-4e31-b5fb-2e3f0a9cb952" name="Trehalose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H22O11</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2" hasOnlySubstanceUnits="true" id="M_hdca_p" metaid="cc21791b-825b-4982-8e9d-9dbe5e055551" name="Hexadecanoate__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H31O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H3NO4" hasOnlySubstanceUnits="true" id="M_iasp_c" metaid="_93117f5e-0e6d-4a26-991c-2fbf5b7298c8" name="Iminoaspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H3NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H25N7O17P3" hasOnlySubstanceUnits="true" id="M_nadp_c" metaid="_7a21d41c-2527-4fa5-a89d-c0f684871ac8" name="Nicotinamide_adenine_dinucleotide_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H25N7O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N4O8P" hasOnlySubstanceUnits="true" id="M_aicar_c" metaid="c365e5c7-e20c-491b-8600-054f09cfbd2e" name="5_Amino_1__5_Phospho_D_ribosyl_imidazole_4_carboxamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_p" metaid="_25731139-3702-4a6d-966c-ae4d0b79a88d" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5" hasOnlySubstanceUnits="true" id="M_ins_c" metaid="fca9d728-c3db-4aac-a171-4b2fd1cc7a08" name="Inosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_c" metaid="d8724f50-c723-4339-90c4-d760b6ff272a" name="M_slnt_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_e" metaid="_10d6d005-33ed-4b6a-9940-3b391a2db297" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_e" metaid="_66b164a6-1705-494f-905b-2b68072c7e6c" name="M_slnt_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H58O10P1" hasOnlySubstanceUnits="true" id="M_pg120_p" metaid="_8d2f2626-1dd2-4252-9ed9-0ebdb215520a" name="Phosphatidylglycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H58O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_D_c" metaid="_4e6d32d9-35cb-48cc-8b7c-551c09c7a4eb" name="D_Ribulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_ile_L_c" metaid="_29a7e4f6-5584-4bd6-b056-f1832a26f099" name="L_Isoleucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H67O8P" hasOnlySubstanceUnits="true" id="M_pa160_c" metaid="_36623cd0-5efa-4a3e-a7e4-389e9e59611e" name="1_2_dihexadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H67O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25O7P2" hasOnlySubstanceUnits="true" id="M_frdp_c" metaid="_14d57c51-4548-451c-9235-2ad74a5f1456" name="Farnesyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnahis_c" metaid="e909d795-209b-4437-8c01-081dddf99e02" name="tRNA_His_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6NO2" hasOnlySubstanceUnits="true" id="M_anth_c" metaid="e755e642-5aa5-4644-a8cd-b64fe895b125" name="Anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbard_p" metaid="b5ea8e0e-dfdc-41a2-b871-13f5e34057c4" name="periplasmic_protein_disulfide_isomerase_I__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_c" metaid="_06e4d779-1980-4ed0-888a-4a87b304bd3c" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnamet_c" metaid="_11ed32e7-7671-4cb2-a6d8-003f716f0c48" name="tRNA_Met_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3Se" hasOnlySubstanceUnits="true" id="M_slnt_p" metaid="_9a371751-3fa6-44d4-80cd-fd9398bd2621" name="M_slnt_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H51N7O26P2" hasOnlySubstanceUnits="true" id="M_ugmd_c" metaid="_6ce9d60d-b574-4192-be81-79aba1aa37bb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H51N7O26P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H57O13P2" hasOnlySubstanceUnits="true" id="M_pgp120_p" metaid="_9380ba53-3d75-46e5-a124-f315e5dc9226" name="Phosphatidylglycerophosphate__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C30H57O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_p" metaid="_6b61be36-75b6-4cc1-b813-63b83b808e30" name="M_OLPS_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7O7" hasOnlySubstanceUnits="true" id="M_micit_c" metaid="_89b182bb-9101-4f1a-9c52-62f1a4245ea4" name="methylisocitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_e" metaid="_6534f674-cebc-4996-91cd-7c83559f5d44" name="M_OLPS_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P2" hasOnlySubstanceUnits="true" id="M_h2mb4p_c" metaid="e88af32f-52bf-4ea3-96d4-c9ed6f6b9627" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O11P2" hasOnlySubstanceUnits="true" id="M_dudp_c" metaid="_7f99c338-b79b-4a9e-9a3d-55ab23354df3" name="dUDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N2O15P3" hasOnlySubstanceUnits="true" id="M_utp_c" metaid="_78f0205b-6045-4d99-afb0-1036908abb19" name="UTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N2O15P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15668H28496N8O10693P8" hasOnlySubstanceUnits="true" id="M_OLPS_XF_c" metaid="e5ec0980-9d6c-4725-a6d8-01596295f970" name="M_OLPS_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15668H28496N8O10693P8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H7NO6PS" hasOnlySubstanceUnits="true" id="M_2c4mthzep_c" metaid="_5e130cfb-277f-428a-a098-650ca7817479" name="M_2c4mthzep_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H7NO6PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O9P" hasOnlySubstanceUnits="true" id="M_xmp_c" metaid="_8099d8a8-dd25-47cf-915e-c00420a9d421" name="Xanthosine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O13P3" hasOnlySubstanceUnits="true" id="M_dctp_c" metaid="a08642fb-55ee-4236-8a19-b968415caa32" name="dCTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O13P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3" hasOnlySubstanceUnits="true" id="M_tyr_L_c" metaid="_50dc732a-90b1-4d27-bc77-30a603eeef26" name="L_Tyrosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H48O5" hasOnlySubstanceUnits="true" id="M_fusa_e" metaid="a4f39bd6-6d7a-4f83-ab21-906515cb01fe" name="fusidic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H48O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_4mop_c" metaid="ec7b9db0-e55f-4b85-a54e-67ba036de2ea" name="4_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O14P3" hasOnlySubstanceUnits="true" id="M_gtp_c" metaid="f501b58d-8a76-4c4b-b5b0-0cb6af68405d" name="GTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_c" metaid="_4530d80a-8366-4757-8e42-1a12017a710b" name="Sulfite" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O8P" hasOnlySubstanceUnits="true" id="M_dtmp_c" metaid="_8fa8df5e-f9a6-4a2a-9535-563565b3373c" name="dTMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_p" metaid="a8f8369a-3d8f-471a-980e-ce1a5aa73b7f" name="M_ca2_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_e" metaid="_770add00-6e39-4481-92b6-c6c36783a157" name="M_so3_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="SO3" hasOnlySubstanceUnits="true" id="M_so3_p" metaid="_226de117-767b-413e-b81c-90865ae649c2" name="M_so3_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_e" metaid="a50766e1-e816-4b32-bd89-9ea5ed091798" name="M_ca2_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H13O10P" hasOnlySubstanceUnits="true" id="M_s7p_c" metaid="fe317856-0f85-41e7-8c01-d8fce29b7d8a" name="Sedoheptulose_7_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H13O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N2O6P" hasOnlySubstanceUnits="true" id="M_eig3p_c" metaid="_570003c0-6fb9-48ed-908a-2f1b9254e4ad" name="D_erythro_1__Imidazol_4_yl_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9N2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Ca" hasOnlySubstanceUnits="true" id="M_ca2_c" metaid="_57786765-d0e3-4a2a-ac05-231fa2bfec2d" name="M_ca2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Ca</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_p" metaid="eccbb63e-15b0-4489-8866-49653582bf25" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnathr_c" metaid="caa87872-92e6-48eb-8128-373ec9bdbf40" name="tRNA_Thr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O5" hasOnlySubstanceUnits="true" id="M_mal_L_c" metaid="_97fc5cd6-bf2d-42b1-b914-4cefd2653eaf" name="L_Malate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H69O3" hasOnlySubstanceUnits="true" id="M_3ophb_c" metaid="f749e6a4-51c6-4758-9ee2-e1082b623069" name="3_Octaprenyl_4_hydroxybenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H69O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_c" metaid="f3f86fa3-01b6-4446-b2b3-aeaddbba06eb" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H62N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H4O2S8Fe2R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s_c" metaid="a5250cc2-3161-4938-b306-d352fac7e26c" name="M_sufbcd_2fe2s_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H4O2S8Fe2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_grxrd_c" metaid="_8b3a6c1e-90fb-4fbd-b760-309122e8d542" name="glutaredoxin__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10NO4" hasOnlySubstanceUnits="true" id="M_acg5sa_c" metaid="_9a6a69d9-7816-41ad-8ab3-31de0f63cebd" name="N_Acetyl_L_glutamate_5_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_c" metaid="_3307887d-664c-42df-99b3-c0d5d6546753" name="1_2_Diacyl_sn_glycerol__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H52O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17N2O3" hasOnlySubstanceUnits="true" id="M_dtbt_c" metaid="_0af8ca97-a291-4301-b6f0-9f7dadb736a3" name="Dethiobiotin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17N2O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C33H62N1O8P1" hasOnlySubstanceUnits="true" id="M_pe141_p" metaid="_4f68c804-0133-4b13-93a2-83e5d3e98b36" name="phosphatidylethanolamine__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C33H62N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C65H116O17P2" hasOnlySubstanceUnits="true" id="M_clpn141_p" metaid="b55e712c-9b04-4968-b46a-97f0ed08440c" name="cardiolipin__tetratetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C65H116O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OS2" hasOnlySubstanceUnits="true" id="M_lipopb_c" metaid="_9197acaa-244b-4a66-8eed-d7562ebe699a" name="lipoate__protein_bound_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H13OS2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O6P" hasOnlySubstanceUnits="true" id="M_db4p_c" metaid="be6cc88e-8869-4f0a-95ea-1cec56d68bf0" name="3_4_dihydroxy_2_butanone_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu1sa_c" metaid="f8659985-6b20-4514-bdbd-5c4e7b903e27" name="L_Glutamate_1_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein4p4p_p" metaid="_6a913d64-d6ad-45f8-8a62-2825c672fe2e" name="two_linked_disacharide_tetrapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H114N14O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_p" metaid="e3e1fbef-5cca-40a9-a98c-22d68418d224" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_p" metaid="_41893ac6-e7a9-4d67-896f-7d614296c101" name="M_xyl_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_p" metaid="cc2947f7-02aa-4881-b504-703d4e90a8de" name="D_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_c" metaid="_55996ed3-aa03-4e98-9d22-d87f9c5ced2f" name="M_xyl_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H8O2S6R" hasOnlySubstanceUnits="true" id="M_sufbcd_c" metaid="c5d03c04-fb33-411e-a839-cb6400a75a7e" name="M_sufbcd_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H8O2S6R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xyl_D_e" metaid="_190803c7-1935-49e4-b876-02d5c43612c7" name="M_xyl_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_c" metaid="_83518b44-6823-4dea-81ce-fabf6225aa85" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_e" metaid="_490d747d-96d9-44b5-a74f-ea08c79312b2" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H64N3O20P2" hasOnlySubstanceUnits="true" id="M_u23ga_XF_c" metaid="d830b30e-b667-4e90-b157-3346d21687d9" name="M_u23ga_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H64N3O20P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2s_c" metaid="_03c73ba3-08aa-40cd-b94f-267fccb11f22" name="Superoxide_anion" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_e" metaid="_238ce08f-7369-4406-88eb-adef1a32991c" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H26N7O17P3" hasOnlySubstanceUnits="true" id="M_nadph_c" metaid="_79cb1c70-0605-41de-a3db-25cfc1fba402" name="Nicotinamide_adenine_dinucleotide_phosphate___reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H26N7O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NH4" hasOnlySubstanceUnits="true" id="M_nh4_c" metaid="f4b835be-56be-4913-9e89-389293095d56" name="Ammonium" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NH4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe2_p" metaid="e656a6e5-41a0-4119-a49e-ef75e9115fbf" name="Iron_2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N3O17P3" hasOnlySubstanceUnits="true" id="M_2p4c2me_c" metaid="_84c625cc-fc64-4646-9307-d5026b6bba60" name="2_phospho_4__cytidine_5__diphospho__2_C_methyl_D_erythritol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N3O17P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_D_c" metaid="be26013f-3974-45f5-86c0-9aede6e77f48" name="D_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_r5p_c" metaid="c107c6cb-e28d-4921-9a7e-0eb61b9914be" name="alpha_D_Ribose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_p" metaid="e188fdee-dc75-4563-beb0-502ac6769ee4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H52N6O19</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_c" metaid="_2e531889-f3ed-462b-9edc-1ef72593aeac" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O10P" hasOnlySubstanceUnits="true" id="M_6pgc_c" metaid="b25c40ad-223d-4863-b211-23866e13e178" name="6_Phospho_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O10P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O14P3" hasOnlySubstanceUnits="true" id="M_dttp_c" metaid="_97d315e1-8977-45fa-abb6-cd2266001fbb" name="dTTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H55N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hoctaACP_c" metaid="cd8a2f3e-3417-498f-aedf-ccd745a14f68" name="R__3_Hydroxyoctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H55N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N2O9PRS" hasOnlySubstanceUnits="true" id="M_actACP_c" metaid="_6d21b80a-2c5d-460d-b282-74d450bbc9d5" name="Acetoacetyl_ACP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H52N6O19" hasOnlySubstanceUnits="true" id="M_anhgm3p_c" metaid="_4c36a102-91f7-4e9a-bfe5-7fb7765935e6" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H52N6O19</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N2O10PRS" hasOnlySubstanceUnits="true" id="M_egmeACP_c" metaid="ae0a7dd9-3026-414e-8379-a1c2e313a528" name="Enoylglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H27N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_pimACP_c" metaid="_4a6b456d-2fb7-48bc-afc1-f4e457b15704" name="Pimeloyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H31N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H20N7O6" hasOnlySubstanceUnits="true" id="M_methf_c" metaid="c972eb08-db57-420d-9381-e52b69f26d30" name="5_10_Methenyltetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H20N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_p" metaid="_08237c0b-8d28-4610-8edb-c238b34de557" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H73O13P2" hasOnlySubstanceUnits="true" id="M_pgp160_p" metaid="_810197d9-640e-48b3-bf2f-8d401750eff4" name="Phosphatidylglycerophosphate__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H73O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8NO6P" hasOnlySubstanceUnits="true" id="M_phom_c" metaid="_15898cdc-8b5e-4ebd-9877-8cc61ccd4930" name="O_Phospho_L_homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H8NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H83N3O15P2" hasOnlySubstanceUnits="true" id="M_cdpdodec11eg_c" metaid="_46d36596-2ce2-41b5-b835-54c7218187b4" name="CDP_1_2_dioctadec_11_enoylglycerol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H83N3O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O4" hasOnlySubstanceUnits="true" id="M_alac_S_c" metaid="_687953f9-6829-4dd8-823c-84bc6e6c29b3" name="S__2_Acetolactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_p" metaid="_32343c1c-0a3c-4091-86df-62277eff228c" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H75O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H52O5" hasOnlySubstanceUnits="true" id="M_12dgr120_p" metaid="ae07c5f0-d23b-484e-97b4-195dda7d543d" name="M_12dgr120_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H52O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2" hasOnlySubstanceUnits="true" id="M_trp_L_c" metaid="_86423dcb-31bd-4177-b7eb-f7b9c3c27372" name="L_Tryptophan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H39N5O23P2" hasOnlySubstanceUnits="true" id="M_uamag_c" metaid="_8c17a128-5d55-4f9a-9be4-f4911ab7e4fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C28H39N5O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C71H107N13O38" hasOnlySubstanceUnits="true" id="M_murein3px4p_p" metaid="a00f4e63-0a18-4c52-810f-238542cdfbc1" name="two_disacharide_linked_murein_units__tripeptide_crosslinked_tetrapeptide__A2pm__D_ala___middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C71H107N13O38</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H21N2O7PRS" hasOnlySubstanceUnits="true" id="M_ACP_c" metaid="_472116a4-d2cf-45ba-915d-86b5cc105f06" name="acyl_carrier_protein" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H21N2O7PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7PS" hasOnlySubstanceUnits="true" id="M_5mdru1p_c" metaid="_71100846-7171-4b77-8870-62eca0fd573d" name="M_5mdru1p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2" hasOnlySubstanceUnits="true" id="M_mthgxl_c" metaid="b887965c-9452-42d7-a22e-baa0a5a843ff" name="Methylglyoxal" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H75O8P" hasOnlySubstanceUnits="true" id="M_pa180_c" metaid="_3732d255-4381-4bb1-8ebd-a90d1432fbe8" name="1_2_dioctadecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H75O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H41N2O9PRS" hasOnlySubstanceUnits="true" id="M_3oddecACP_c" metaid="_6ffd781b-5e15-4bb0-adc8-b0b05ec36855" name="3_Oxododecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H41N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_c" metaid="_5fb87366-9fc9-4a49-b0f1-5c18e13a6018" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_c" metaid="b666fa77-cef2-4c37-8d40-a553b728e8ad" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O4" hasOnlySubstanceUnits="true" id="M_rdmbzi_c" metaid="_9bf3dd91-d3c2-4be1-83b9-d15eb375d1d3" name="N1__alpha_D_ribosyl__5_6_dimethylbenzimidazole" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H36N4O16" hasOnlySubstanceUnits="true" id="M_uppg3_c" metaid="aefadabf-4806-463b-8dcf-424db614e01e" name="Uroporphyrinogen_III" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C40H36N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se" hasOnlySubstanceUnits="true" id="M_selhcys_c" metaid="add92886-d68c-400d-a608-87b7d2655da8" name="Selenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_hom_L_c" metaid="bf36d9c9-5f97-41cb-bd84-506bf8977cd0" name="L_Homoserine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_c" metaid="c9ff885b-532d-49e6-ac9d-4ab3afdef128" name="M_indole_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H36N7O18P3S" hasOnlySubstanceUnits="true" id="M_aacoa_c" metaid="d7c74ffc-762e-4458-8aa4-990be3b32b43" name="Acetoacetyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H36N7O18P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O11PRS" hasOnlySubstanceUnits="true" id="M_opmeACP_c" metaid="_0a001492-7fe0-47cd-babd-0c3415d27b2b" name="3_Oxo_pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H31N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_p" metaid="b35981b6-aee2-4541-988d-3eeb4e9a7c26" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O3" hasOnlySubstanceUnits="true" id="M_acac_c" metaid="f897ec0e-395a-4bf1-bba0-bcb8e72c3648" name="Acetoacetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O7P" hasOnlySubstanceUnits="true" id="M_dcmp_c" metaid="_6c621c31-b987-4e9f-9880-794aeff18760" name="dCMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O14P3" hasOnlySubstanceUnits="true" id="M_itp_c" metaid="_774db795-83b1-4585-8485-3bfa0156e766" name="ITP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_e" metaid="_11049dd9-1838-42ae-90b6-d7081ea742e8" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H69N1O10P1" hasOnlySubstanceUnits="true" id="M_ps161_c" metaid="ac18d7e5-0b39-4fb7-b1fc-bb08d4f1ae96" name="phosphatidylserine__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H69N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2R" hasOnlySubstanceUnits="true" id="M_thrtrna_c" metaid="_860a736f-5b1f-44be-8559-f3a648922a5f" name="L_Threonyl_tRNA_Thr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2S10Fe4R" hasOnlySubstanceUnits="true" id="M_sufbcd_2fe2s2_c" metaid="a22e912a-1f29-4df2-9e79-f57714fe2a00" name="M_sufbcd_2fe2s2_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2S10Fe4R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C41H61N9O28P2" hasOnlySubstanceUnits="true" id="M_ugmda_c" metaid="c3bd4715-8445-4d3c-bbde-ea68d321c37b" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C41H61N9O28P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2" hasOnlySubstanceUnits="true" id="M_gly_c" metaid="_1eb1bf75-0a4f-4556-b9a1-367bbb5da0f9" name="Glycine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H65O13P2" hasOnlySubstanceUnits="true" id="M_pgp140_p" metaid="_36585e3d-b923-4499-9905-981b8a14a1b8" name="Phosphatidylglycerophosphate__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H65O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbcrd_p" metaid="_17c951f0-f66b-4570-bc25-0fc79729db39" name="protein_disulfide_isomerase_II__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_B_c" metaid="_5eef8089-a73c-420e-a253-fd35255ab7c4" name="beta_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5" hasOnlySubstanceUnits="true" id="M_xylu_D_c" metaid="cac99b80-c7f6-4b10-8f29-6c9bcbe43731" name="D_Xylulose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O2R" hasOnlySubstanceUnits="true" id="M_glntrna_c" metaid="_1afac2e2-a970-45d3-9b2a-a99818ff5717" name="L_Glutaminyl_tRNA_Gln_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_e" metaid="_7a3c546d-aae9-400f-8a68-2584af93deab" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O2" hasOnlySubstanceUnits="true" id="M_o2_c" metaid="_920db3b3-4cfd-4d03-a1bb-99fb95379c36" name="Dioxygen" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H21N7O6" hasOnlySubstanceUnits="true" id="M_mlthf_c" metaid="d7a2c78b-dbaf-49fb-97e6-b7bdf8707ee6" name="5_10_Methylenetetrahydrofolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H21N7O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2" hasOnlySubstanceUnits="true" id="M_gcald_c" metaid="_4045042c-4961-478c-9a3c-9af1e66a3996" name="Glycolaldehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H4O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_p" metaid="_1194e4f2-dd8f-4074-9966-92524ee9094c" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H21N3O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4fn_c" metaid="_36f966e5-da63-4c99-8a43-558ae54009cb" name="M_udpLa4fn_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H21N3O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocvac11eACP_c" metaid="db6136a2-7b96-4201-be7d-8455a2ca2886" name="3_oxo_cis_vacc_11_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H51N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3" hasOnlySubstanceUnits="true" id="M_ser_L_e" metaid="d0f98745-1684-4a23-bb58-b12c850f41a2" name="L_Serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14N3O" hasOnlySubstanceUnits="true" id="M_Ncbmpts_c" metaid="c2189df2-d53f-42e3-a49f-4df323c52e6d" name="M_Ncbmpts_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H14N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_c" metaid="_66ed4545-1d94-4af3-b8db-d431ff6d993a" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H19O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2" hasOnlySubstanceUnits="true" id="M_acetol_c" metaid="e01fadbd-2425-46dc-bf6a-0d89e3023690" name="Acetol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_LL_c" metaid="_384c9764-e06f-4341-8700-cc42fb02c829" name="LL_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19O2" hasOnlySubstanceUnits="true" id="M_dca_p" metaid="e4ee61d6-be90-4fe4-a39a-b3fdf5f10d40" name="Decanoate__n_C10_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H19O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7N2" hasOnlySubstanceUnits="true" id="M_aprop_c" metaid="b4654be9-f0de-481b-99db-20c6c45e318b" name="alpha_Aminopropiononitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_c" metaid="b4642c87-1848-4d86-a0e9-43f209ea22f7" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H70N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70N1O8P1" hasOnlySubstanceUnits="true" id="M_pe161_p" metaid="_06e1ce0a-e5fd-4faa-bb0a-10460b9bbb83" name="phosphatidylethanolamine__dihexadec_9enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C37H70N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O12P3" hasOnlySubstanceUnits="true" id="M_datp_c" metaid="c8230291-6069-4824-b5c3-bd4a92f40ceb" name="dATP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O12P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_p" metaid="_90a0300f-a58a-43a6-bdaa-a8f418893a53" name="M_nmn_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_p" metaid="_9eec1621-5626-4005-9798-12f0bd29d07d" name="minocycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H27N3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H27N3O7" hasOnlySubstanceUnits="true" id="M_mincyc_e" metaid="_97f9c245-fc34-4fdc-82cc-125c0a03dba5" name="minocycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H27N3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H31N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hhexACP_c" metaid="_99f7a9f7-c421-452d-a75f-4e1fc7a93682" name="R__3_Hydroxyhexanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H31N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_c" metaid="c527a149-b573-43fd-a723-0b38da30fd60" name="NMN" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14N2O8P" hasOnlySubstanceUnits="true" id="M_nmn_e" metaid="b74a8305-5c42-4e87-93fe-43e5523f2d8c" name="M_nmn_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H14N2O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dkglc_c" metaid="_0aff4c17-50d4-459d-8d62-799a5a7a6700" name="2_deoxy_5_keto_D_gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N3O3" hasOnlySubstanceUnits="true" id="M_citr_L_c" metaid="b702e36d-a82d-44d2-b37e-3c02741b65b2" name="L_Citrulline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13N3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_c" metaid="c76e89dc-a277-4202-95f8-3ae6b5867643" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H66O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H14N5O8P" hasOnlySubstanceUnits="true" id="M_25drapp_c" metaid="e80af714-1c96-4b5b-bdb7-2687affcb2e8" name="2_5_Diamino_6__ribosylamino__4__3H__pyrimidinone_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H14N5O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5O3" hasOnlySubstanceUnits="true" id="M_4hbz_c" metaid="_01257ba0-9cfe-4e3c-92a6-a1755daa91fc" name="4_Hydroxybenzoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O20P5" hasOnlySubstanceUnits="true" id="M_gdptp_c" metaid="_74530af1-b0ef-4b97-8d8d-d032e3302ef1" name="Guanosine_3__diphosphate_5__triphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O20P5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_p" metaid="c4486849-9f1e-493a-a783-f4e0f11b44a3" name="M_indole_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N4OR" hasOnlySubstanceUnits="true" id="M_argtrna_c" metaid="a29f6a64-1972-4bdd-ab20-a07401403bd7" name="L_Arginyl_tRNA_Arg_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N4OR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="S2Fe2" hasOnlySubstanceUnits="true" id="M_2fe2s_c" metaid="_042234e1-a6d4-4292-b6e0-44286a168d5f" name="2Fe_2S__iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: S2Fe2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H36FeN4O16" hasOnlySubstanceUnits="true" id="M_sheme_c" metaid="_44458f90-77ca-472f-9d9c-544e52c2a5c1" name="M_sheme_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H36FeN4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7O3S" hasOnlySubstanceUnits="true" id="M_2kmb_c" metaid="dc176f49-8ff2-46a7-8d86-9197a8296b77" name="M_2kmb_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H7O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O" hasOnlySubstanceUnits="true" id="M_ncam_c" metaid="_069e618e-c1cd-4e94-8c46-163f9c8650ee" name="Nicotinamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H6N2O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H66O10P1" hasOnlySubstanceUnits="true" id="M_pg140_p" metaid="_21d0ab57-2ce0-4bb3-ac3b-3ccd08dd0f74" name="Phosphatidylglycerol__ditetradecanoyl__n_C14_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H66O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C95H152N8O28P2" hasOnlySubstanceUnits="true" id="M_uaagmda_c" metaid="_839ad1c3-0c7f-4c19-acca-2baf0c1dfe00" name="Undecaprenyl_diphospho_N_acetylmuramoyl__N_acetylglucosamine__L_ala_D_glu_meso_2_6_diaminopimeloyl_D_ala_D_ala" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C95H152N8O28P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7N" hasOnlySubstanceUnits="true" id="M_indole_e" metaid="c7b03900-6569-43ef-b1d4-d52ac716312c" name="M_indole_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H7N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_c" metaid="c88ceaf9-ec64-4a8f-ad11-4f5278c32933" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N2O18P2" hasOnlySubstanceUnits="true" id="M_udpglcur_c" metaid="ee49d88c-916d-4d33-a508-9c2c2e573e93" name="UDP_D_glucuronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H19N2O18P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4" hasOnlySubstanceUnits="true" id="M_dgsn_c" metaid="_8a68773e-a15e-434a-9255-30db16dd9f60" name="Deoxyguanosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O8P" hasOnlySubstanceUnits="true" id="M_gmp_c" metaid="_1fec28c5-4bfe-4f14-88cf-9c69eb01035b" name="GMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20N3O8S" hasOnlySubstanceUnits="true" id="M_lgt_S_c" metaid="_0f9a8114-4c5e-4b9c-96bb-3f1fd1496125" name="R__S_Lactoylglutathione" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C13H20N3O8S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H24N6O15P2" hasOnlySubstanceUnits="true" id="M_dnad_c" metaid="_54379ba1-6b67-419c-b014-16b8f6e4f0ec" name="Deamino_NAD_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H24N6O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16NO5" hasOnlySubstanceUnits="true" id="M_pnto_R_c" metaid="a8479452-3800-4d7d-9011-e72a1d15395e" name="R__Pantothenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H16NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3NO" hasOnlySubstanceUnits="true" id="M_frmd_c" metaid="_8fdc8aae-84a9-44e2-bfa6-b23c27efad70" name="Formamide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_c" metaid="_3c1a78a0-2626-4e14-a3f8-920fe080e89b" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_p" metaid="_008a959d-4c73-4490-9e90-bfaaa2800594" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_p" metaid="a9461d95-59e4-4416-be08-825cfd9ab462" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42N7O17P3S" hasOnlySubstanceUnits="true" id="M_hxcoa_c" metaid="_62173060-2365-4b0a-844b-ebe9570612c9" name="Hexanoyl_CoA__n_C6_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H42N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_c" metaid="bf130d8a-ea65-4f7a-8fba-05c81f75a16c" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H30N5O9</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4O6" hasOnlySubstanceUnits="true" id="M_tartr_D_c" metaid="_3c55486e-a3b2-41b5-9259-17fa9bced04f" name="M_tartr_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_p" metaid="fc4e897f-6c9e-4db6-9e88-e152a0314e66" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_p" metaid="_3d54e1ba-ed15-451c-9697-d90757980854" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_p" metaid="_2502dd0a-d150-47fd-8c37-bcf8aca3ee2e" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C114H172N22O59" hasOnlySubstanceUnits="true" id="M_murein5px4px4p_p" metaid="_982b8cc4-953e-4d0a-9e96-4b7c42b10abd" name="three_disacharide_linked_murein_units__pentapeptide_crosslinked_tetrapeptide__A2pm__D_ala__tetrapeptide_corsslinked_tetrapeptide__A2pm__D_ala____middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C114H172N22O59</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbdrd_c" metaid="a64e1365-cc16-429a-b6d5-c065eab028b0" name="fused_thiol_disulfide_interchange_protein__reduced_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO4" hasOnlySubstanceUnits="true" id="M_chitos_c" metaid="_2bcac2b8-afeb-48f4-ae21-030887e3a747" name="Chitosan" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="SFe2" hasOnlySubstanceUnits="true" id="M_2fe1s_c" metaid="_17a6cca5-606c-4941-b5d6-7835d25c528a" name="2Fe_1S__desulfurated_iron_sulfur_cluster" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: SFe2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O7P" hasOnlySubstanceUnits="true" id="M_e4p_c" metaid="_39835147-d3d9-49a8-885f-283d08d181fd" name="D_Erythrose_4_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_e" metaid="e5abd030-9340-4a4e-bbbd-5b21d8656a66" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_c" metaid="f978f7a7-8bf7-4482-b9c2-beca681339e9" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H55O4" hasOnlySubstanceUnits="true" id="M_2hp6mobq_me_c" metaid="_33497ea1-1610-4c76-9877-727932b040a4" name="2_Hexaprenyl_3_methyl_5_hydroxy_6_methoxy_1_4_benzoquinone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H55O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_e" metaid="_554d2a97-1bee-4264-9fa6-09be7456bcbb" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3O3" hasOnlySubstanceUnits="true" id="M_glyclt_c" metaid="_65b2183a-ddcf-4381-9de2-a107d713f3a8" name="Glycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H30N5O9" hasOnlySubstanceUnits="true" id="M_LalaDgluMdapDala_p" metaid="_1d4db780-a420-49a8-83b6-7216e38f38dd" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C18H30N5O9</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO3" hasOnlySubstanceUnits="true" id="M_no3_e" metaid="e581c969-9254-4298-8248-0014f6c0c620" name="Nitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7O6P" hasOnlySubstanceUnits="true" id="M_glyc3p_c" metaid="_6feed938-b90a-4460-8d02-c8d50ef986ac" name="Glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H81O13P2" hasOnlySubstanceUnits="true" id="M_pgp180_p" metaid="_2858a7ce-a73d-4680-9ac4-c5dac0db95a5" name="Phosphatidylglycerophosphate__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H81O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO4" hasOnlySubstanceUnits="true" id="M_glu_L_e" metaid="b2a967d6-406d-4bcc-ab0f-b663177bbcdc" name="L_Glutamate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H31N2O10PRS" hasOnlySubstanceUnits="true" id="M_epmeACP_c" metaid="_21d1ec1b-e598-4833-9f17-a385008ae05b" name="Enoylpimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H31N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_p" metaid="f9691f5b-e9a3-46e9-ba1f-01fc7b113133" name="M_h2_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_c" metaid="_6565bacc-687b-449e-a5f4-9ca05d63f802" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6" hasOnlySubstanceUnits="true" id="M_glc_D_e" metaid="_72aab22e-24dc-4b6f-8b30-b0522ba63937" name="D_Glucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NOR" hasOnlySubstanceUnits="true" id="M_phetrna_c" metaid="c3fe7524-0ceb-4b49-936a-7221e11250e1" name="L_Phenylalanyl_tRNA_Phe_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctdACP_c" metaid="_13fdd979-fb86-4511-bba9-1aac7d2c3f2e" name="3_Oxooctadecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_c" metaid="cb536510-dcdf-4b75-a366-17ae03734737" name="D_Gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O2" hasOnlySubstanceUnits="true" id="M_ppa_c" metaid="_9674bdfc-fb67-4d2a-8e5a-6b29aa955e0e" name="Propionate__n_C3_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H18NO8" hasOnlySubstanceUnits="true" id="M_acmum_p" metaid="_8d4998e5-1b2b-460a-b8bd-129c29763583" name="M_acmum_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H18NO8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_c" metaid="_121f3ff0-ac59-41a0-a978-2201a7442d0c" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H74O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO6P" hasOnlySubstanceUnits="true" id="M_pser_L_c" metaid="e14edc1e-83a9-4b8f-8b17-a9be3ffae083" name="O_Phospho_L_serine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_athr_L_c" metaid="_1c12eff7-8faa-474b-a5cd-871c7482cb12" name="L_Allo_threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_p" metaid="_3f734818-c32c-4729-a252-3045cff50a39" name="Cys_Gly" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S" hasOnlySubstanceUnits="true" id="M_ahcys_c" metaid="_303ab19e-02a1-48ac-8d2c-e25e1dbe9c1e" name="S_Adenosyl_L_homocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N6O5S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_e" metaid="bcf85acc-a44f-467a-9cc5-c5e5f281e208" name="M_h2_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H45N2O8PRS" hasOnlySubstanceUnits="true" id="M_tdeACP_c" metaid="_83fee56a-50df-467a-8ab0-75d7032b0bcb" name="cis_tetradec_7_enoyl__acyl_carrier_protein___n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H45N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H2" hasOnlySubstanceUnits="true" id="M_h2_c" metaid="_2155aa07-cf0e-4b2f-a153-5d4c88585a86" name="H2" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O11P" hasOnlySubstanceUnits="true" id="M_orot5p_c" metaid="_39237433-67e9-4f38-a4bd-d779b10786ce" name="Orotidine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H10N2O11P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_man1p_c" metaid="_3c7cb235-19e6-4f35-8408-9af3a85ca92b" name="D_Mannose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxr_c" metaid="_7a8b6c4f-b4c2-4987-9e52-5356b96bfc4b" name="M_flxr_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O3" hasOnlySubstanceUnits="true" id="M_3mop_c" metaid="a523d445-008c-4f73-91d3-478484d82d72" name="S__3_Methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C49H56FeN4O5" hasOnlySubstanceUnits="true" id="M_hemeO_c" metaid="_0862868f-02c0-4967-861e-a89874c6b49a" name="Heme_O" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C49H56FeN4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O7" hasOnlySubstanceUnits="true" id="M_glcn_p" metaid="_30675c26-1429-4eb7-a42f-3b346589fbef" name="D_Gluconate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H74O10P1" hasOnlySubstanceUnits="true" id="M_pg160_p" metaid="_41f5eda1-869c-44af-a7a1-e2ee7a28e24f" name="Phosphatidylglycerol__dihexadecanoyl__n_C16_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H74O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S" hasOnlySubstanceUnits="true" id="M_cgly_c" metaid="_8f4859cd-9f82-4c9a-88b1-2dd331db4644" name="Cys_Gly" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H10N2O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_c" metaid="_31430382-6fc5-4576-ae42-16748a9951bf" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_f6p_c" metaid="e58dcf26-8f99-4c9c-a634-506b81f9fb2a" name="D_Fructose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c9palmeACP_c" metaid="_9aeb9984-cc71-424e-8288-087fa414f07d" name="trans_3_cis_9_palmitoleoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H47N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_e" metaid="fc9ab27f-4e10-4baa-b4d7-a2d9134f3e3f" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_ru5p_L_c" metaid="_5aa83291-7ce9-4bc9-909f-2193bc0ed427" name="M_ru5p_L_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_p" metaid="_397a31ba-d391-49b7-b384-000d062a6aaa" name="Chloramphenicol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12Cl2N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_e" metaid="_352e74f1-4166-49d0-bb20-fb3eb7aeb53f" name="rifampin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C43H58N4O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C1O2X" hasOnlySubstanceUnits="true" id="M_moadcoo_c" metaid="a8316226-bed9-4f26-93a8-6be58383b8b6" name="MoaD_Protein_with_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C1O2X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_palmACP_c" metaid="_3762fc7b-6549-4a88-9003-48b60822fd9b" name="Palmitoyl_ACP__n_C16_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12Cl2N2O5" hasOnlySubstanceUnits="true" id="M_cm_e" metaid="_9a640f21-052a-4b92-9827-f460860e5f2a" name="Chloramphenicol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12Cl2N2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H58N4O12" hasOnlySubstanceUnits="true" id="M_rfamp_p" metaid="_9e523d1e-bcfb-4063-b0b4-9b52feb69de7" name="rifampin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C43H58N4O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O4" hasOnlySubstanceUnits="true" id="M_fum_p" metaid="_074c5051-13ae-413f-946f-848579c350a9" name="Fumarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_2aobut_c" metaid="_846910d3-7931-4ddb-9936-20ee14b3ad7e" name="L_2_Amino_3_oxobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_c" metaid="_73cd75d1-afde-4e2b-9ae1-eee238056f1f" name="1_2_Diacyl_sn_glycerol__dihexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H64O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H51N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c11vaceACP_c" metaid="_2e9bdb87-6192-421d-bd4b-73afeb5524eb" name="trans_3_cis_11_vacceoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H51N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12NO9P" hasOnlySubstanceUnits="true" id="M_nicrnt_c" metaid="cf878e02-dec2-4a25-aafa-e0c88bc7cc46" name="Nicotinate_D_ribonucleotide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H12NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_p" metaid="_2ea942c4-3bb3-4f7b-a6d2-b3dd291513f3" name="M_icit_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_p" metaid="c872ba42-6e97-4150-8915-a81262ca281c" name="tetracycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H24N2O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O10P2" hasOnlySubstanceUnits="true" id="M_13dpg_c" metaid="_270a294f-95f4-44eb-b2b5-d1521a2fff09" name="3_Phospho_D_glyceroyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H4O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H24N2O8" hasOnlySubstanceUnits="true" id="M_ttrcyc_e" metaid="f670aae4-f0dd-4f6b-8ed1-a4fa8390d25a" name="tetracycline" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C22H24N2O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H53N2O8PRS" hasOnlySubstanceUnits="true" id="M_toctd2eACP_c" metaid="_8280755e-4003-4945-8e15-4f0cb979c977" name="trans_octadec_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H53N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O4" hasOnlySubstanceUnits="true" id="M_2ahbut_c" metaid="d2a9e733-d780-46e4-830b-4945c038cd20" name="S__2_Aceto_2_hydroxybutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_dextrin_e" metaid="aba1bc8e-b8b7-490e-956a-4dee1f2680ab" name="M_dextrin_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6" hasOnlySubstanceUnits="true" id="M_g15l_p" metaid="_0a17ce51-04cc-417a-ab06-c85a5e0c8db2" name="D_Glucono_1_5_lactone" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_icit_c" metaid="_390ea3f2-ac4d-4790-9ee7-cdb1988ba3c1" name="Isocitrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaarg_c" metaid="_46cb99e1-98d9-44f4-8f95-544977a6f5e7" name="tRNA_Arg_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6PS" hasOnlySubstanceUnits="true" id="M_dkmpp_c" metaid="d3778e9a-8347-4952-b345-6ecea063cafe" name="M_dkmpp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16NO7" hasOnlySubstanceUnits="true" id="M_anhm_c" metaid="d8f281e8-5887-440f-9c17-f97971d3c49e" name="1_6_anhydrous_N_Acetylmuramate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H16NO7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3" hasOnlySubstanceUnits="true" id="M_dad_5_c" metaid="_162bf943-8215-436c-9a89-d5c63f6d3dfb" name="5__Deoxyadenosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_e" metaid="_0ea01ae0-7a5d-47a4-8207-c196a812ded6" name="Mn2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_c" metaid="_83d9933b-0372-4a51-bfc7-169bdd775534" name="Manganese_II_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O6" hasOnlySubstanceUnits="true" id="M_dglca_c" metaid="_03dac608-6eae-4ee4-91b3-0618ed2fc166" name="5_deoxy_D_glucuronate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H9O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_lac_D_c" metaid="_92fe2025-bab0-45f4-89f0-5a654c84b81c" name="D_Lactate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3" hasOnlySubstanceUnits="true" id="M_dhbpt_c" metaid="_2ef223f7-d5f3-4373-8f36-0fbb847f6ab2" name="6_7_Dihydrobiopterin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H13N5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15N3O8P" hasOnlySubstanceUnits="true" id="M_fpram_c" metaid="_11f9ced6-220d-4c17-bd17-96e8243fe635" name="2__Formamido__N1__5_phospho_D_ribosyl_acetamidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H15N3O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C56H104N2O23P2" hasOnlySubstanceUnits="true" id="M_lipidA_XF_c" metaid="edce8bf3-d3c8-44d2-a24c-327cfbec2374" name="M_lipidA_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C56H104N2O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O6P" hasOnlySubstanceUnits="true" id="M_pep_c" metaid="_2765b289-a330-4856-81c4-71992fa0bb32" name="Phosphoenolpyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NOSR" hasOnlySubstanceUnits="true" id="M_mettrna_c" metaid="_94574803-7c62-41d4-8341-a609b551a430" name="L_Methionyl_tRNA__Met_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H11NOSR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Mn" hasOnlySubstanceUnits="true" id="M_mn2_p" metaid="_63cac064-c94d-4dde-b64a-11d3f308d2f5" name="Mn2_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Mn</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H36N7O17P3S" hasOnlySubstanceUnits="true" id="M_ppcoa_c" metaid="a27fc8f7-130b-4386-849e-70cb867096c9" name="Propanoyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C24H36N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C23H39N2O8PRS" hasOnlySubstanceUnits="true" id="M_t3c5ddeceACP_c" metaid="_4bc7d4c1-4433-455a-8181-396b0a525b28" name="trans_3_cis_5_dodecenoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C23H39N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_c" metaid="_2c84ea61-f646-49c6-ac1e-dbc1f2fdf85d" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H58N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N3O" hasOnlySubstanceUnits="true" id="M_histd_c" metaid="d5fb9dd9-a2f3-407e-9b0d-a719c112bc83" name="L_Histidinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H12N3O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_c" metaid="_16a0df8e-1911-417d-b125-2918f2299f9a" name="1_2_Diacyl_sn_glycerol__ditetradec_7_enoyl__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H56O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H58N1O8P1" hasOnlySubstanceUnits="true" id="M_pe120_p" metaid="_2efe61fc-09ae-4a2b-b42e-7f9d89a4bb36" name="phosphatidylethanolamine__didodecanoyl__n_C12_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H58N1O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H3NO4" hasOnlySubstanceUnits="true" id="M_quln_c" metaid="_7e704a7e-2d52-4f55-a31c-bb6bf13405bc" name="Quinolinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H3NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H2O6P" hasOnlySubstanceUnits="true" id="M_2pglyc_c" metaid="a9c779bc-73bb-429c-82ac-f1d5e8105b9e" name="2_Phosphoglycolate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H2O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_e" metaid="_7ed40c3c-689a-4997-b5ad-0079ba185554" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3" hasOnlySubstanceUnits="true" id="M_thr_L_c" metaid="ccef9837-5d96-4e60-9c0c-2672a5629645" name="L_Threonine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_p" metaid="f59f3bc5-3c3c-4fd6-ae5b-939942a79ce0" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O4" hasOnlySubstanceUnits="true" id="M_2ippm_c" metaid="d51257c2-db77-41ea-9b03-b8d41edcae98" name="2_Isopropylmaleate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO7P" hasOnlySubstanceUnits="true" id="M_glu5p_c" metaid="_4523a949-71c1-409d-9cba-ec22cd14f73c" name="L_Glutamate_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_e" metaid="_560a0eeb-b33c-4ace-aef9-bcac1be88ff4" name="M_26dap_M_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_p" metaid="_7d19cc7c-930d-466e-845e-2aedfc790de2" name="M_gam_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H27N7O14P2" hasOnlySubstanceUnits="true" id="M_nadh_c" metaid="feac70b0-8dd4-49dd-9afb-0fc93df5401c" name="Nicotinamide_adenine_dinucleotide___reduced" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H27N7O14P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_e" metaid="bafb266d-7642-47fc-bdc2-40a2f41bf73b" name="tetradecenoate__n_C14_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H103NO12P2" hasOnlySubstanceUnits="true" id="M_unaga_c" metaid="_97140357-6131-49e4-9c24-ca9e51a3081f" name="M_unaga_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C63H103NO12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaphe_c" metaid="_36e668f0-8836-43fc-b8c4-e22366d250a1" name="tRNA_Phe_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O6P" hasOnlySubstanceUnits="true" id="M_damp_c" metaid="f801f755-6314-40e9-9e9d-68dd8967bcbf" name="dAMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_p" metaid="_8537f091-4c5b-4e94-9386-71ef84199284" name="M_26dap_M_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2" hasOnlySubstanceUnits="true" id="M_ttdcea_c" metaid="_7387439c-8c10-4deb-b715-adda9dd0959a" name="M_ttdcea_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H25O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14NO5" hasOnlySubstanceUnits="true" id="M_gam_e" metaid="bf3397ff-7c27-49cf-a5e5-8f48f161aba5" name="M_gam_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H14NO5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4" hasOnlySubstanceUnits="true" id="M_din_c" metaid="_9c2d087d-1c06-4a51-9bc1-8b8202068d0c" name="Deoxyinosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O7P" hasOnlySubstanceUnits="true" id="M_3php_c" metaid="_0fb5b963-9894-4c7e-900d-7d5b7f4ccbb1" name="3_Phosphohydroxypyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H2O7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4" hasOnlySubstanceUnits="true" id="M_26dap_M_c" metaid="_6b4708cc-8d37-4523-a33a-8a3f548e9865" name="meso_2_6_Diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3" hasOnlySubstanceUnits="true" id="M_aspsa_c" metaid="_1995c6c7-5118-4172-82bb-296c56d148c8" name="L_Aspartate_4_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H7NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_c" metaid="f5066035-7862-4549-9d2b-5e71f281bf18" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O3" hasOnlySubstanceUnits="true" id="M_2ommbl_c" metaid="_40ed71e3-12af-489c-a5e3-a5ba53cb72bc" name="2_Octaprenyl_3_methyl_6_methoxy__1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C48H74O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_p" metaid="e73ed5ad-98a2-4070-80bc-d3ece99cd822" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_e" metaid="a0e6dc03-ad15-426d-9a8e-80908dccacac" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H25N4O8" hasOnlySubstanceUnits="true" id="M_LalaDgluMdap_c" metaid="_8624a039-983f-4473-82b6-1b7be44491fa" name="L_alanine_D_glutamate_meso_2_6_diaminoheptanedioate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H25N4O8</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CO" hasOnlySubstanceUnits="true" id="M_co_c" metaid="f711aaca-47ad-450e-8cca-6070cf65cd51" name="M_co_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O10P2" hasOnlySubstanceUnits="true" id="M_dcdp_c" metaid="d547ceea-a425-42bc-87d6-39f4026f90a9" name="dCDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_e" metaid="_1cf5bbb7-1e75-4de6-bf05-dc6db17d2a86" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H77N1O10P1" hasOnlySubstanceUnits="true" id="M_ps181_c" metaid="b0f4bfe5-188c-46b3-a87f-2c85f2a79d71" name="phosphatidylserine__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H77N1O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C87H139N7O23P2" hasOnlySubstanceUnits="true" id="M_uagmda_c" metaid="_52361ad1-ff9e-4601-b62f-10d13922c6b9" name="Undecaprenyl_diphospho_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C87H139N7O23P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O11P2" hasOnlySubstanceUnits="true" id="M_gdp_c" metaid="_4d576e1f-6b4a-47cc-963f-9390631ffd78" name="GDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N3O14P3" hasOnlySubstanceUnits="true" id="M_ctp_c" metaid="e2a3d3fa-1d81-45c3-8f1b-92f4ffeecca8" name="CTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H12N3O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S" hasOnlySubstanceUnits="true" id="M_cyst_L_c" metaid="_04430647-1956-47c6-b6e4-6ddb82c1762f" name="L_Cystathionine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H14N2O4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CHO2" hasOnlySubstanceUnits="true" id="M_for_c" metaid="_90d52229-a7c1-4b06-b990-b044c20d6001" name="Formate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CHO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H22N2O17P2" hasOnlySubstanceUnits="true" id="M_udpg_c" metaid="_25040098-e003-4d31-b33b-a7110bc635b2" name="UDPglucose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C15H22N2O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O14P3" hasOnlySubstanceUnits="true" id="M_prpp_c" metaid="_1fa598cf-8d1c-40fa-ae87-674bb649493b" name="5_Phospho_alpha_D_ribose_1_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8O14P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H10N5O" hasOnlySubstanceUnits="true" id="M_preq1_c" metaid="_7561f96b-0fd2-4731-9323-d56c511ab333" name="7_aminomethyl_7_deazaguanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H10N5O</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C73H132O17P2" hasOnlySubstanceUnits="true" id="M_clpn161_p" metaid="_563f51c7-0c46-4fc5-8a8d-ba9a4903ad18" name="cardiolipin__tetrahexadec_9_enoyl__n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C73H132O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_e" metaid="_48392e55-55a3-43d1-b536-869f6a74fd42" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H56O5" hasOnlySubstanceUnits="true" id="M_12dgr141_p" metaid="_754f9919-8169-46b9-8786-2863fde130ee" name="M_12dgr141_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H56O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_c" metaid="_8a3ed28f-207c-43fe-b93d-1cc888d93a36" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P" hasOnlySubstanceUnits="true" id="M_g3pc_p" metaid="_3038c5c8-ce15-40c6-abc5-8979b9a20954" name="sn_Glycero_3_phosphocholine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H20NO6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O3" hasOnlySubstanceUnits="true" id="M_2ombzl_c" metaid="_198940b7-84bf-4c2e-8459-5c043ce406c2" name="2_Octaprenyl_6_methoxy_1_4_benzoquinol" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C47H72O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O8PRS" hasOnlySubstanceUnits="true" id="M_toct2eACP_c" metaid="a191ac13-d59a-4a6b-ae86-5a90fba15916" name="trans_Oct_2_enoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C120H186N24O63" hasOnlySubstanceUnits="true" id="M_murein5p5p5p_p" metaid="_58b3d38e-2db7-4756-83ac-4ccc4b40fed5" name="three_linked_disacharide_pentapeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C120H186N24O63</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10NO2SR" hasOnlySubstanceUnits="true" id="M_fmettrna_c" metaid="be2f4cde-d70c-4406-8a4e-b5a64ac4fcd0" name="N_Formylmethionyl_tRNA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10NO2SR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="NO" hasOnlySubstanceUnits="true" id="M_no_p" metaid="b5ab317d-edc9-4068-9a7a-7877a6a0be75" name="Nitric_oxide" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: NO</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H33N7O19P3S" hasOnlySubstanceUnits="true" id="M_malcoa_c" metaid="e598fbb1-d731-4b58-ac81-16ff15473763" name="Malonyl_CoA" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C24H33N7O19P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="Fe" hasOnlySubstanceUnits="true" id="M_fe3_p" metaid="a6c68052-dae6-45cc-8564-bfa30186a4a8" name="Iron_3_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: Fe</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbaox_p" metaid="_301d5e8f-ca9f-481d-8160-a26c73c5f724" name="periplasmic_protein_disulfide_isomerase_I__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35O7P1" hasOnlySubstanceUnits="true" id="M_1hdec9eg3p_c" metaid="f10511bc-e638-4271-9657-1a007c59f626" name="1_hexadec_9_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H35O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_e" metaid="_2d2e9441-87cd-4cb5-9dae-d9b322fab05c" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H39O7P1" hasOnlySubstanceUnits="true" id="M_1odec11eg3p_c" metaid="_355949af-0df1-4d5d-9200-f9726a162b09" name="1_octadec_11_enoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C21H39O7P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_c" metaid="_7a730f38-2843-43f2-a9c2-db9dbd8454a6" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9NO8P" hasOnlySubstanceUnits="true" id="M_acg5p_c" metaid="_9587ca03-006b-4462-bba4-1653f9d3be4c" name="N_Acetyl_L_glutamyl_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H9NO8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_c" metaid="_8ef34f64-9157-434e-9d4e-2f71a589e3a1" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO4" hasOnlySubstanceUnits="true" id="M_asp_L_e" metaid="_97882726-764d-40b7-8ecd-54c5ae404ee5" name="L_Aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_c" metaid="fbdecdc5-da38-4485-9402-e37a7ee8e96d" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_p" metaid="dad4a909-6ffc-4ebb-a221-6e8a92044868" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_p" metaid="_43a0d9fd-6b9b-4ece-a292-f121ca1df4ed" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_e" metaid="_43e8eaa8-5a8e-4ab1-9f04-6aa38022fcc0" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3" hasOnlySubstanceUnits="true" id="M_glu5sa_c" metaid="_0902e050-92cb-4616-b47f-da9cba6a8230" name="L_Glutamate_5_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NO3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_c" metaid="c2dbb7ce-9fe2-454a-af2e-5fb6ab06ed23" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_grxox_c" metaid="fc14c6e0-1cb3-43ed-bf25-0050931862ea" name="glutaredoxin__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_c" metaid="_37ab8510-c554-4d80-877b-373eb15f23bf" name="1_2_Diacyl_sn_glycerol__dioctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H72O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H4NO2" hasOnlySubstanceUnits="true" id="M_nac_p" metaid="a45e0051-33de-4c18-9c02-cb86aed92e9c" name="Nicotinate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H4NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H89O4P" hasOnlySubstanceUnits="true" id="M_udcpp_p" metaid="_07c547ef-ba13-4bff-bbab-46534805b2a6" name="Undecaprenyl_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C55H89O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H72O5" hasOnlySubstanceUnits="true" id="M_12dgr181_p" metaid="_7df07bcf-bf48-4acf-a654-02364352ec1e" name="M_12dgr181_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C39H72O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H31N9O15P2" hasOnlySubstanceUnits="true" id="M_fad_c" metaid="cd16f790-67a3-4fc2-a2cd-aecf6e72c44a" name="Flavin_adenine_dinucleotide_oxidized" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H31N9O15P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O7P2" hasOnlySubstanceUnits="true" id="M_dmpp_c" metaid="b2544a1f-0dc7-49d5-9a1b-18fa03419b09" name="Dimethylallyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO7P" hasOnlySubstanceUnits="true" id="M_4pasp_c" metaid="_53e3625c-2d16-4306-9cb8-acf6724f9cd6" name="4_Phospho_L_aspartate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H6NO7P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H13N6O3" hasOnlySubstanceUnits="true" id="M_dhpt_c" metaid="_0c240f4f-7f99-4dbc-ac4b-d27d264700ae" name="Dihydropteroate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H13N6O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H43N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocmrs7eACP_c" metaid="e8804b0a-f001-40a8-b73c-7f148cd1c30e" name="3_oxo_cis_myristol_7_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H43N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8NO3R" hasOnlySubstanceUnits="true" id="M_glutrna_c" metaid="c63b44f5-a227-40a5-8110-461e7664c5e2" name="L_Glutamyl_tRNA_Glu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8NO3R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_c" metaid="_54e0d9f5-b91e-48f1-b964-c6d4504b8933" name="Oxaloacetate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_c" metaid="a136a98d-77aa-4926-b835-cb7b7364bd5b" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6" hasOnlySubstanceUnits="true" id="M_xtsn_c" metaid="_13634181-c76a-4a81-b729-e1e18323b2ec" name="Xanthosine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N4O6</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_e" metaid="_39f1b8aa-d3a3-4cb2-84a8-96c9406e664e" name="M_oaa_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaala_c" metaid="_241262b3-1524-4949-b2f2-307c77e80759" name="tRNA_Ala_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_p" metaid="_1cd48d3e-3831-4e76-ac5c-b6237e335ed3" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2" hasOnlySubstanceUnits="true" id="M_ala_L_e" metaid="e2883b30-80ea-47a4-a3a5-03271a3893cd" name="L_Alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_mi1p_D_c" metaid="f1cf004a-6ae1-4dfa-8855-6d68f21c58fe" name="1D_myo_Inositol_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO5S2" hasOnlySubstanceUnits="true" id="M_scys_L_c" metaid="_7ebc2b90-6180-45f7-bd7b-7121cc072a5e" name="S_Seleno_L_cysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H6NO5S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H2O5" hasOnlySubstanceUnits="true" id="M_oaa_p" metaid="_0c6ba5c2-a68f-4439-9bb4-e7b1077b2030" name="M_oaa_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H2O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N3O9P" hasOnlySubstanceUnits="true" id="M_5aizc_c" metaid="e0424e3d-345a-4d11-881b-4500f38d4b43" name="5_amino_1__5_phospho_D_ribosyl_imidazole_4_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C9H11N3O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaval_c" metaid="_9307e0c3-9ddb-4e62-ae32-9693117c070e" name="tRNA_Val_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H7O4" hasOnlySubstanceUnits="true" id="M_dhna_c" metaid="c6a93da8-05cc-4361-bfec-283bfdd5c597" name="M_dhna_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C11H7O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_p" metaid="e3fff18b-7796-462c-98e1-3d485f513e96" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_e" metaid="b0d55aa8-bf10-42c8-b8ea-123b123a6cdf" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_c" metaid="_68418409-f335-431c-8996-4d0f8aa940b0" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O3" hasOnlySubstanceUnits="true" id="M_3hpp_c" metaid="c5750266-8367-4dcd-b8b6-0c79a496084e" name="3_Hydroxypropanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnaglu_c" metaid="d6f2c2e1-8337-449e-a46c-53bb916b88db" name="tRNA__Glu_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_gal1p_c" metaid="f6679c5a-159e-4867-a60f-268f845fd101" name="alpha_D_Galactose_1_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="H" hasOnlySubstanceUnits="true" id="M_h_e" metaid="f1b6cbf1-69eb-4bd8-bc37-e876e4dc85e7" name="proton_H_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: H</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3O7" hasOnlySubstanceUnits="true" id="M_osucc_c" metaid="_4a139b8b-b190-4e29-8295-00af65fb89c0" name="M_osucc_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H3O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="XH" hasOnlySubstanceUnits="true" id="M_flxso_c" metaid="_140e86df-cba4-483b-8e4d-ea8c89da50a2" name="M_flxso_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H51O8P1" hasOnlySubstanceUnits="true" id="M_pa120_c" metaid="a35ecd9e-5d62-4720-9a48-86c83d293bd9" name="1_2_didodecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H51O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_c" metaid="d5bf1430-b236-471e-bffd-330ad08312c6" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_c" metaid="fa6e293e-3fc4-40c4-b78f-a3ceef2b3e7d" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_e" metaid="_4ea2de50-4355-4717-98d8-2977165565eb" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_e" metaid="b17c51b1-e8d8-4454-8a75-5cac7f4af518" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="HO3P" hasOnlySubstanceUnits="true" id="M_ppt_p" metaid="f0b9118e-7dd4-4e5b-a9a9-1599f516994b" name="M_ppt_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HO3P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_c" metaid="ef5bb962-1082-46f1-90e2-7b6c96207e48" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O15P3" hasOnlySubstanceUnits="true" id="M_xtp_c" metaid="_4c1d2621-fb1a-4c64-96df-a2c128dc8ed0" name="XTP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O15P3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O2" hasOnlySubstanceUnits="true" id="M_acybut_c" metaid="_409ab852-6cdf-4bd0-a2b1-99105412ba43" name="gamma_Amino_gamma_cyanobutanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H8N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NOR" hasOnlySubstanceUnits="true" id="M_protrna_c" metaid="_12a0bbef-367e-4a3f-a6ce-427bceda6fd3" name="L_Prolyl_tRNA_Pro_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="O3S2" hasOnlySubstanceUnits="true" id="M_tsul_p" metaid="_3b16619b-907b-45e5-a6da-20824985c4e5" name="Thiosulfate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: O3S2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H39N4O16" hasOnlySubstanceUnits="true" id="M_scl_c" metaid="c7883cb2-fde3-45fa-91b6-770f6b03edcb" name="sirohydrochlorin" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H39N4O16</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O5" hasOnlySubstanceUnits="true" id="M_3c4mop_c" metaid="d5d937ae-07a7-41fa-a701-79824c479f48" name="3_Carboxy_4_methyl_2_oxopentanoate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H8O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N2O11P2" hasOnlySubstanceUnits="true" id="M_dtdp_c" metaid="eb377850-c371-43a8-9858-d993a35f49e9" name="dTDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H13N2O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H15N2O2" hasOnlySubstanceUnits="true" id="M_lys_L_p" metaid="_2e07cfe9-2dca-49f6-b2a4-e17cae15f282" name="L_Lysine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H15N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_e" metaid="_6411d276-b49e-4441-9c4c-c94102396cce" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H12N2O5P" hasOnlySubstanceUnits="true" id="M_pyam5p_c" metaid="f650fd4e-8782-49c2-bda0-c40585363fee" name="Pyridoxamine_5__phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H12N2O5P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NOR" hasOnlySubstanceUnits="true" id="M_alatrna_c" metaid="e56d57ec-8f7a-440b-a12b-6e4631b95919" name="L_Alanyl_tRNA_Ala_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4O5" hasOnlySubstanceUnits="true" id="M_akg_p" metaid="a67f052f-35bd-43c1-adb8-4e43508bf222" name="2_Oxoglutarate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H4O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46N7O17P3S" hasOnlySubstanceUnits="true" id="M_occoa_c" metaid="_0f007fc3-d373-4035-a2a1-4ea49468e43a" name="Octanoyl_CoA__n_C8_0CoA_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C29H46N7O17P3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O12P2" hasOnlySubstanceUnits="true" id="M_tagdp_D_c" metaid="_894c8e6c-31b5-4de0-bf03-4652ee16400b" name="D_Tagatose_1_6_biphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H10O12P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O10PRS" hasOnlySubstanceUnits="true" id="M_pmeACP_c" metaid="db986ad5-99cc-40d9-9744-16526c914d14" name="Pimeloyl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O8P" hasOnlySubstanceUnits="true" id="M_imp_c" metaid="d69bee01-9927-4531-8711-2d454cad6a4a" name="IMP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5Se" hasOnlySubstanceUnits="true" id="M_seahcys_c" metaid="_4258087e-c242-4d51-9ebb-48744feb508d" name="Se_Adenosylselenohomocysteine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H20N6O5Se</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_c" metaid="_96c00e78-4cd1-43d7-8325-80821e27a87e" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H82O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H33N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ooctACP_c" metaid="c85f425a-ae23-4a02-b515-8ba08eda764e" name="3_Oxooctanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H33N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29N2O11PRS" hasOnlySubstanceUnits="true" id="M_hgmeACP_c" metaid="_6e93e55a-7e7f-4345-9c06-863a26d45a85" name="3_Hydroxyglutaryl__acyl_carrier_protein__methyl_ester" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H29N2O11PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O7P2" hasOnlySubstanceUnits="true" id="M_grdp_c" metaid="_49fb8505-c10b-486b-82f3-5692426ba994" name="Geranyl_diphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H17O7P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O16P2" hasOnlySubstanceUnits="true" id="M_gdpmann_c" metaid="de438222-54cc-4726-952e-75035bf84528" name="GDP_D_mannose" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H23N5O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_pyr_p" metaid="c4099479-3078-4c0b-8bff-7948647ffa56" name="Pyruvate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HS2R" hasOnlySubstanceUnits="true" id="M_iscssh_c" metaid="_5ba18a87-4bba-4353-95f1-513b68844dfa" name="IscS_with_bound_sulfur" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HS2R</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O13P2" hasOnlySubstanceUnits="true" id="M_s17bp_c" metaid="dba98b8f-c61e-49d1-a284-4714f266848d" name="M_s17bp_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H12O13P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H82O10P1" hasOnlySubstanceUnits="true" id="M_pg180_p" metaid="_6bd73a39-fbae-4d25-bdc5-5fd6441fda1d" name="Phosphatidylglycerol__dioctadecanoyl__n_C18_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C42H82O10P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O8PRS" hasOnlySubstanceUnits="true" id="M_myrsACP_c" metaid="df44ad25-ac95-45d0-9647-879f707a7471" name="Myristoyl_ACP__n_C14_0ACP_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H47N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C38H56N8O27P2" hasOnlySubstanceUnits="true" id="M_um4p_c" metaid="a0d3e7b3-1f92-41ea-8f6c-ba87600e87fb" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C38H56N8O27P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO9P" hasOnlySubstanceUnits="true" id="M_acgam6p_c" metaid="dc2c18e5-6558-4019-ad49-1e3b80ebef8c" name="N_Acetyl_D_glucosamine_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C8H14NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="XH2" hasOnlySubstanceUnits="true" id="M_dsbgrd_p" metaid="eff717fd-49e3-488e-8606-499039426a48" name="M_dsbgrd_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: XH2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_p" metaid="_815c4d68-bc29-42b2-aee9-6e71f5fd471e" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="AsO4" hasOnlySubstanceUnits="true" id="M_aso4_c" metaid="e0a1b8f9-6211-4b7a-b8bb-01cd95f33365" name="Arsenate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: AsO4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="X" hasOnlySubstanceUnits="true" id="M_dsbcox_p" metaid="_20ca6384-7107-4748-920a-e081ce8740bf" name="protein_disulfide_isomerase_II__oxidized_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: X</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_c" metaid="_1d0c9062-4b33-4ade-836b-0f41149578d2" name="M_cys_D_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C81H148O17P2" hasOnlySubstanceUnits="true" id="M_clpn181_p" metaid="_1c51d3b9-7219-4a23-a8cd-4d419ce90c58" name="cardiolipin__tetraoctadec_11_enoyl__n_C18_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C81H148O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_e" metaid="b01d433a-64f0-4020-a983-b8e0634c2f39" name="M_cys_D_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO4S" hasOnlySubstanceUnits="true" id="M_3sala_c" metaid="_63991681-2ab2-40a1-8153-0d0cfba427e9" name="M_3sala_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5NO4S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_e" metaid="_567f5eb0-dc47-4e7a-853f-e3754d6e0810" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H18N2O16P2" hasOnlySubstanceUnits="true" id="M_udpLa4o_c" metaid="_73df25c6-e744-404d-a867-5f34259d0693" name="M_udpLa4o_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H18N2O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H64O5" hasOnlySubstanceUnits="true" id="M_12dgr161_p" metaid="_82d8a338-3515-4257-84e3-2e9c6b224bb1" name="M_12dgr161_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C35H64O5</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2" hasOnlySubstanceUnits="true" id="M_leu_L_c" metaid="b0ac6125-caf8-4276-8069-6f5d009bead4" name="L_Leucine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H13NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H5N" hasOnlySubstanceUnits="true" id="M_bzonit_c" metaid="_75292c17-90aa-4b78-9352-2043ad74c04d" name="Benzonitrile" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C7H5N</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N3O4P" hasOnlySubstanceUnits="true" id="M_4ampm_c" metaid="_26c01e93-50ec-4b08-a1e1-191ffe0bc728" name="4_Amino_2_methyl_5_phosphomethylpyrimidine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H8N3O4P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_c" metaid="_77e3b37d-7cba-4b89-94ee-8fd98c3abce5" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H29N2O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_c" metaid="_60e9bc22-f9f6-4f58-8f58-98f644ba003f" name="M_kdo2lipid4_XF_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C74H114N14O40" hasOnlySubstanceUnits="true" id="M_murein5p3p_p" metaid="d096ffe1-da0f-4e1d-bd61-620f8fd34348" name="two_linked_disacharide_pentapeptide_and_tripeptide_murein_units__uncrosslinked__middle_of_chain_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C74H114N14O40</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N4O11P2" hasOnlySubstanceUnits="true" id="M_idp_c" metaid="_621697eb-74bf-4ad1-885c-c3c9cebb13c7" name="IDP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N4O11P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6NO2" hasOnlySubstanceUnits="true" id="M_1pyr5c_c" metaid="_5a7d2518-c748-4b90-b2ee-4e14720b3e61" name="1_Pyrroline_5_carboxylate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H6NO2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_e" metaid="f14e0454-e072-40c1-879e-1965b3ff0fc7" name="M_kdo2lipid4_XF_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H13NO9P" hasOnlySubstanceUnits="true" id="M_pran_c" metaid="_51841d19-27f5-4c5a-b36c-f035d475c09d" name="N__5_Phospho_D_ribosyl_anthranilate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H13NO9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O8P" hasOnlySubstanceUnits="true" id="M_xu5p_D_c" metaid="_907b93b7-6be0-44dd-9165-b1bc108b8e60" name="D_Xylulose_5_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C5H9O8P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H22N2O10PRS" hasOnlySubstanceUnits="true" id="M_malACP_c" metaid="e3f679de-fe9b-4b89-93ca-4d57782a66e6" name="Malonyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C14H22N2O10PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3O3" hasOnlySubstanceUnits="true" id="M_msa_c" metaid="_0d762fd3-71c4-4529-b200-7bc4f8b1f35b" name="Malonate_semialdehyde" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H3O3</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5O6P" hasOnlySubstanceUnits="true" id="M_dhap_c" metaid="df0429d8-48ee-4ebd-8476-05f607e62cfb" name="Dihydroxyacetone_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H5O6P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_c" metaid="_83a1b111-befa-49a2-84c4-ab6eb3cb52af" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29N2O12" hasOnlySubstanceUnits="true" id="M_anhgm_p" metaid="e768bf82-dfbd-493b-b2b8-fd48dd4b3921" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramic_acid" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C19H29N2O12</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H24N10O19P4" hasOnlySubstanceUnits="true" id="M_ap4a_c" metaid="_51621837-3db4-461c-ba68-daa702e55f16" name="P1_P4_Bis_5__adenosyl__tetraphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C20H24N10O19P4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5N2O2" hasOnlySubstanceUnits="true" id="M_urcan_c" metaid="_5c743639-01c9-4034-88a4-fd1a3a711f30" name="Urocanate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_e" metaid="_1e3735ba-e736-42df-8d6f-8a9542a04881" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H126N2O37P2" hasOnlySubstanceUnits="true" id="M_kdo2lipid4_XF_p" metaid="_865f8957-d223-4884-b75c-07b819961598" name="M_kdo2lipid4_XF_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H126N2O37P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H38N4O4" hasOnlySubstanceUnits="true" id="M_pppg9_c" metaid="a39d6345-6a0d-4358-9088-cf1204117095" name="Protoporphyrinogen_IX" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C34H38N4O4</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_e" metaid="_43ccbf86-2d88-499a-9f01-2dd79b4d4a79" name="M_14aglucan_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_c" metaid="_5749ed56-6e05-4901-9b4b-b5dfee5733c8" name="1_4_alpha_D_Glucosyl_n" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NOR" hasOnlySubstanceUnits="true" id="M_glytrna_c" metaid="_4a83b6ff-cd79-43e3-8aa4-8e0d9bfde226" name="Glycyl_tRNA_Gly_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C2H5NOR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H49N2O8PRS" hasOnlySubstanceUnits="true" id="M_hdeACP_c" metaid="da832ba9-9348-4a4b-9fcf-8128e12a24f7" name="cis_hexadec_9_enoyl__acyl_carrier_protein___n_C16_1_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H49N2O8PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N5O9P2" hasOnlySubstanceUnits="true" id="M_dadp_c" metaid="_0ea2039b-4061-4345-8af5-ada4eac793ec" name="dADP" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H12N5O9P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H122O61" hasOnlySubstanceUnits="true" id="M_14aglucan_p" metaid="_906cd203-bd17-4164-9158-fbbed1e862ac" name="M_14aglucan_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C72H122O61</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O7" hasOnlySubstanceUnits="true" id="M_cit_p" metaid="d14e510b-4acd-44f7-88e3-d883529a9812" name="Citrate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H5O7</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_c" metaid="efbea65b-9d47-4614-8b70-9ca95f446dc9" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnatyr_c" metaid="_1bd65fd4-64bf-4feb-a711-1460105a0c36" name="tRNA_Tyr_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_e" metaid="fa3f8603-57c4-4e14-a648-8cd4efaddbc4" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_c" metaid="ee1ab707-2158-424d-9184-aae220a5e737" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_c" metaid="c46235c5-0aa5-444e-83e7-94c55e9f4e91" name="Uracil" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H27N2O14P" hasOnlySubstanceUnits="true" id="M_chtbs6p_c" metaid="_9bdd4880-3d07-4a9a-a72b-5cef7fac4128" name="M_chtbs6p_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H27N2O14P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O17P2" hasOnlySubstanceUnits="true" id="M_uacgam_c" metaid="b30f5402-fc0a-4542-81ec-6eb62f3d22d1" name="UDP_N_acetyl_D_glucosamine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O17P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_e" metaid="ccfc70ef-41a5-42a6-81c1-b46663f039d8" name="M_ura_e" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H25N3O16P2" hasOnlySubstanceUnits="true" id="M_udpacfuc_c" metaid="d3296540-f850-4c00-8d52-8a6584778037" name="M_udpacfuc_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C17H25N3O16P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O2" hasOnlySubstanceUnits="true" id="M_hxa_p" metaid="aabefeb0-b032-4613-90e2-50e217087b0b" name="Hexanoate__n_C6_0_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="CH3O3S" hasOnlySubstanceUnits="true" id="M_mso3_p" metaid="a6f41b1d-5495-4a4a-81c6-a2f8f207215c" name="methanesulfonate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: CH3O3S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2" hasOnlySubstanceUnits="true" id="M_ura_p" metaid="_8bdfb689-18da-4a6b-8278-2a2c65065ca6" name="M_ura_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H4N2O2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_c" metaid="_5a4391db-b9ee-403d-bbbf-69573a3f3e23" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H59O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11N5O10P2" hasOnlySubstanceUnits="true" id="M_pap_c" metaid="_6eda61d5-8a33-4a54-b717-9f489f619aca" name="Adenosine_3__5__bisphosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C10H11N5O10P2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="HR" hasOnlySubstanceUnits="true" id="M_trnapro_c" metaid="_6922d10c-bdf3-4ac4-9008-42f8753800e1" name="tRNA_Pro_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: HR</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S" hasOnlySubstanceUnits="true" id="M_cys_D_p" metaid="_4824fa5f-73d8-45e7-b781-7d9390953608" name="M_cys_D_p" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C3H7NO2S</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_c" metaid="c453ad0a-9c46-44c6-99fc-d1a00c8a4979" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_e" metaid="_9a6a8e7b-11d7-443a-a435-e3864359232b" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H16N4O4PS" hasOnlySubstanceUnits="true" id="M_thmmp_c" metaid="_13decc39-a41f-4a2e-a73a-36731e84d6d0" name="Thiamin_monophosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C12H16N4O4PS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3ocpalm9eACP_c" metaid="_0884f9ed-92ea-4902-b209-cc1a46219385" name="3_oxo_cis_palm_9_eoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C27H47N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O9P" hasOnlySubstanceUnits="true" id="M_g6p_c" metaid="c4353cf2-27e9-4c56-b9ac-e5ee8c23e8dc" name="D_Glucose_6_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C6H11O9P</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H59O8P1" hasOnlySubstanceUnits="true" id="M_pa140_p" metaid="_5d254239-e98b-4a67-bddc-19ff12646b0f" name="1_2_ditetradecanoyl_sn_glycerol_3_phosphate" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C31H59O8P1</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C25H47N2O9PRS" hasOnlySubstanceUnits="true" id="M_3hmrsACP_c" metaid="_70619344-3e7b-4386-bb9f-0daba264f997" name="R__3_Hydroxytetradecanoyl__acyl_carrier_protein_" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C25H47N2O9PRS</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="p" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H14N2" hasOnlySubstanceUnits="true" id="M_ptrc_p" metaid="_86f3a98d-4598-4a29-85f5-f393f0e6e519" name="Putrescine" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C4H14N2</p> + </body> + </notes> + </species> + <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H21N5O15P2" hasOnlySubstanceUnits="true" id="M_gdp4d6dm_c" metaid="a954935d-5ef2-4be6-9881-cd849b42fd81" name="M_gdp4d6dm_c" sboTerm="SBO:0000240"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>formula: C16H21N5O15P2</p> + </body> + </notes> + </species> + </listOfSpecies> + <listOfParameters> + <parameter constant="true" id="UPPER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="99999"/> + <parameter constant="true" id="LOWER_BOUND_0_0" units="mmol_per_gDW_per_hr" value="0"/> + <parameter constant="true" id="LOWER_BOUND_99999_0" units="mmol_per_gDW_per_hr" value="-99999"/> + </listOfParameters> + <listOfReactions> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUPRT" metaid="_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf" name="glutamine_phosphoribosyldiphosphate_amidotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000770</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14369fd2-8f83-4ef5-a5bc-80f277a1cbbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG180abcpp" metaid="_309b13d3-cbb6-4182-ac1d-46340890b347" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_309b13d3-cbb6-4182-ac1d-46340890b347"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtex" metaid="fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea" name="Hypoxanthine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc02e5bf-c6fd-48eb-8077-c7b72c8d14ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hxan_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUtex" metaid="_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b" name="L_leucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4335a7b1-bbd5-44dd-9c9a-ebcc1fa9676b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_leu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METTRS" metaid="ad24d68c-cf9b-45ab-abd3-56446f8d42ed" name="Methionyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006950</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad24d68c-cf9b-45ab-abd3-56446f8d42ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glu_L_e" metaid="_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012" name="R_EX_glu_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80df0d73-fb34-4b1b-b43b-cb5a2bc7c012"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUCYS" metaid="_82876c4f-119d-442e-8003-fd0b8b8c557f" name="gamma_glutamylcysteine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82876c4f-119d-442e-8003-fd0b8b8c557f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAMPC" metaid="e5b61c92-a688-4271-af80-91f6cc7df401" name="phosphoribosyl_AMP_cyclohydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.4.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5b61c92-a688-4271-af80-91f6cc7df401"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALtex" metaid="_0813fcbe-e60c-4afd-ab14-2197c512b3a7" name="L_valine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0813fcbe-e60c-4afd-ab14-2197c512b3a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE141abcpp" metaid="d06025bc-2fe5-4f60-9f7f-554494955a65" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d06025bc-2fe5-4f60-9f7f-554494955a65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_MEOH" metaid="_103d41e9-a0d8-48d4-998c-2885cb732810" name="R_DM_MEOH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_103d41e9-a0d8-48d4-998c-2885cb732810"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tex" metaid="c67872a0-b10c-4820-85dc-1079bd7171f9" name="copper__Cu_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c67872a0-b10c-4820-85dc-1079bd7171f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Ptex" metaid="_24207fcd-c1e8-4a47-9993-82ceb08ce6a3" name="sn_Glycerol_3_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24207fcd-c1e8-4a47-9993-82ceb08ce6a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR" metaid="e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df" name="R_SELGTHR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1e2fe01-c3b9-4fa2-9d8c-63d260a5f5df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPS" metaid="_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a" name="1_deoxy_D_xylulose_5_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020600</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.2.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92a20d90-2d2e-469d-80f1-b4ef7ed6ae3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPO_LACCASE" metaid="f394e9de-d142-4627-8a3e-83ae22843555" name="Dimethoxyphenol_oxidase_laccase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013090</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.10.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f394e9de-d142-4627-8a3e-83ae22843555"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmoxpol_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tmoxdpq_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY2pp" metaid="c93308b1-aad3-402b-a862-11afbb3fc3fd" name="murein_lytic_transglycosylase__murein4p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c93308b1-aad3-402b-a862-11afbb3fc3fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD160" metaid="_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2" name="Phosphatidylserine_decarboxylase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ca3fed7-9650-46a3-b5f9-3d2379ccfba2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD60" metaid="_2f4d3818-add9-4c52-bc66-934853d16392" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f4d3818-add9-4c52-bc66-934853d16392"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QULNS" metaid="_89adc41d-91eb-4b1f-9627-6c8c241e29f7" name="quinolinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.72</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89adc41d-91eb-4b1f-9627-6c8c241e29f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.72"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADH16pp" metaid="_981fc70e-7cb2-49e3-a7b4-5f8349994de4" name="NADH_dehydrogenase__ubiquinone_8___3_protons___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025600 AND XFCFBP8418_025610 AND XFCFBP8418_025620 AND XFCFBP8418_025630 AND XFCFBP8418_025640 AND XFCFBP8418_025650 AND XFCFBP8418_025660 AND XFCFBP8418_025670 AND XFCFBP8418_025680 AND XFCFBP8418_025690 AND XFCFBP8418_025700 AND XFCFBP8418_025720 AND XFCFBP8418_025730</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.6.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_981fc70e-7cb2-49e3-a7b4-5f8349994de4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.6.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025600"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025660"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025730"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD" metaid="_1b6f2247-9e71-47cc-b8ad-f4b0ece10040" name="Beta_hexosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_001510 ) OR ( XFCFBP8418_021350 )</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b6f2247-9e71-47cc-b8ad-f4b0ece10040"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCITL2" metaid="_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13" name="methylisocitrate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022790</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.1.3.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ea3f7d5-e2ae-4c22-bad9-07e33c547b13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEtex" metaid="_2a13a352-80f4-40cc-8e34-d8de3874af53" name="glycero_3_phosphoethanolamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a13a352-80f4-40cc-8e34-d8de3874af53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pe_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPK" metaid="_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98" name="aspartate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.7.2.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f92d4f9-8ea4-4a3d-a6b8-2dbc86ec5f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD161" metaid="c09709b6-e435-448f-8a39-24621fed6636" name="Phosphatidylserine_decarboxylase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c09709b6-e435-448f-8a39-24621fed6636"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rtex" metaid="adebd6ac-199d-4bb3-806c-78c44400a694" name="R_AKGt2rtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#adebd6ac-199d-4bb3-806c-78c44400a694"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP4pp" metaid="_432105e1-fc64-4ad2-accf-a32b00339618" name="murein_D_D_endopeptidase__murein4px4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_432105e1-fc64-4ad2-accf-a32b00339618"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PTT" metaid="_82e3a877-0072-405f-96d7-b5b8aee32c62" name="glucose_1_phosphate_thymidylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82e3a877-0072-405f-96d7-b5b8aee32c62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP120abcpp" metaid="_95955cb8-0c3d-4efc-b5d3-d271056c82c2" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95955cb8-0c3d-4efc-b5d3-d271056c82c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPS" metaid="bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2" name="phosphoenolpyruvate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022440</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.9.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf5b3eb0-b23b-46c6-93dd-4e37adc2cbb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2MAHMP" metaid="_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe" name="2_Methyl_4_amino_5_hydroxymethylpyrimidine_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d3bc6e1-faff-4cdc-98ef-b3db11a2d1fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULtex" metaid="d9cb977b-1ed7-46f2-880c-4b9e492145be" name="R_SULtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9cb977b-1ed7-46f2-880c-4b9e492145be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPM" metaid="_3d261807-574e-441f-8141-b58af7afcbd4" name="R_PPM" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.4.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d261807-574e-441f-8141-b58af7afcbd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtpp" metaid="_97b03bc1-d9f6-42f5-9213-cbc5a80501c9" name="R_ORNtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97b03bc1-d9f6-42f5-9213-cbc5a80501c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCptspp" metaid="a5036fe0-e602-4b03-8a02-61ed7ee43202" name="R_GLCptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a5036fe0-e602-4b03-8a02-61ed7ee43202"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_URA_e" metaid="fd91adc6-3242-4c4f-873b-895cc743cf86" name="R_EX_URA_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fd91adc6-3242-4c4f-873b-895cc743cf86"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_USHDXF" metaid="e9865075-87c4-4211-acd9-1e784b54ed83" name="R_USHDXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012350</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e9865075-87c4-4211-acd9-1e784b54ed83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASR" metaid="_6bb0e45a-0673-4f17-8b22-2d9261e8b641" name="R_ASR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_015110</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6bb0e45a-0673-4f17-8b22-2d9261e8b641"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015110"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_aso4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aso3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPBNGS" metaid="_202ef9f6-693d-4498-add8-ed21231eea8b" name="porphobilinogen_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_202ef9f6-693d-4498-add8-ed21231eea8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5aop_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppbng_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PApp" metaid="_25b1fdbc-6f3b-48a0-8511-cb128926cb1d" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_amidase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011590</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.5.1.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_25b1fdbc-6f3b-48a0-8511-cb128926cb1d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabc" metaid="_28e0eb51-089b-40cc-b17e-e2a1f37062ae" name="R_GLYC3Pabc" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e0eb51-089b-40cc-b17e-e2a1f37062ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACOAR" metaid="a31cc524-015e-4a3a-81b5-41ae0b05130c" name="acetoacetyl_CoA_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025580</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.36</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a31cc524-015e-4a3a-81b5-41ae0b05130c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.36"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r3hbcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAAD" metaid="_49d1cf96-0b01-4869-91d6-edc4d3d3de31" name="D_Amino_acid_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010710</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 1.4.99.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49d1cf96-0b01-4869-91d6-edc4d3d3de31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.99.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD" metaid="d312bee4-2cbd-42d8-9bae-17ee32fee20c" name="R_ARD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 1.13.11.53</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d312bee4-2cbd-42d8-9bae-17ee32fee20c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.53"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mtpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA180abcpp" metaid="_5091b6e2-ef92-4479-8b11-9e1d4b778674" name="phosphatidate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5091b6e2-ef92-4479-8b11-9e1d4b778674"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD80" metaid="_77926968-2528-4de7-9b9f-0f7c44626c73" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77926968-2528-4de7-9b9f-0f7c44626c73"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120pp" metaid="_6a689f43-ecf3-4264-b0e7-b714b4d7c095" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a689f43-ecf3-4264-b0e7-b714b4d7c095"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCtpp" metaid="f2bf7fbc-77d4-4531-aea8-6f578ae146df" name="glycerol_transport_via_channel__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2bf7fbc-77d4-4531-aea8-6f578ae146df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNTRS" metaid="_49002df7-93bb-449e-b598-c830b9a5a437" name="Glutaminyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004140</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49002df7-93bb-449e-b598-c830b9a5a437"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004140"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnagln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDP4KPS" metaid="a8dc7f00-c76a-4ac1-bc13-be9336ed82eb" name="UDP_4_keto_pentose_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8dc7f00-c76a-4ac1-bc13-be9336ed82eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNN" metaid="_4fbdee0a-5742-4787-a3e1-55709a4b4a7a" name="L_asparaginase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024050</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fbdee0a-5742-4787-a3e1-55709a4b4a7a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR40" metaid="_117d8d3d-f0b7-4778-91dd-c9a830f0490b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_117d8d3d-f0b7-4778-91dd-c9a830f0490b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOCMT" metaid="_66369825-8159-41b0-aef5-5421b139c375" name="R_ACOCMT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.1.3.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66369825-8159-41b0-aef5-5421b139c375"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOAT2XF" metaid="f302aa33-53e3-478f-adb3-5467cf4fb26a" name="R_MOAT2XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.99.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f302aa33-53e3-478f-adb3-5467cf4fb26a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA" metaid="_5a29b271-98c0-4cfd-910c-c667f06ba935" name="inorganic_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 ) OR ( XFCFBP8418_019680 )</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 3.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5a29b271-98c0-4cfd-910c-c667f06ba935"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD140" metaid="_01dad332-1a3c-4153-8df5-b37ea27b2473" name="Phosphatidylserine_decarboxylase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01dad332-1a3c-4153-8df5-b37ea27b2473"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS3r" metaid="_60f46c0e-3148-4c43-8d24-e134cba85758" name="R_TRPS3r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60f46c0e-3148-4c43-8d24-e134cba85758"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPS" metaid="_08649866-a11a-42f5-9c63-bc67e65b4fce" name="2_isopropylmalate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017930</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.3.3.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_08649866-a11a-42f5-9c63-bc67e65b4fce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNS" metaid="bccbebed-11f0-42cd-a1d9-24cdac9ca01d" name="glutamine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017710</p> + <p>SUBSYSTEM: Glutamate_Metabolism_</p> + <p>EC_NUMBER: 6.3.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bccbebed-11f0-42cd-a1d9-24cdac9ca01d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNA2" metaid="a33b4b51-cc6e-451d-8e71-4a5283381588" name="R_CHTNA2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010730</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a33b4b51-cc6e-451d-8e71-4a5283381588"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010730"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="49"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chtbs_e" stoichiometry="50"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD141" metaid="_4e296aea-508c-400f-8105-5b544b9797ba" name="Phosphatidylserine_decarboxylase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e296aea-508c-400f-8105-5b544b9797ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSabcpp" metaid="_051d2f7e-278f-4b19-81f8-746cc4f031ae" name="L_lysine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_051d2f7e-278f-4b19-81f8-746cc4f031ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lys_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_DAD_5" metaid="_49f56dfb-077f-4510-8638-b0fce0a1f7e3" name="R_DM_DAD_5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49f56dfb-077f-4510-8638-b0fce0a1f7e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FOR" metaid="_2c90897c-1dc2-4313-847b-b063fec53fee" name="R_DM_FOR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2c90897c-1dc2-4313-847b-b063fec53fee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA1" metaid="b0cfc4f4-6093-446d-9500-4a3e2fc3316b" name="ketol_acid_reductoisomerase__2_3_dihydroxy_3_methylbutanoate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.86</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b0cfc4f4-6093-446d-9500-4a3e2fc3316b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PCPpp" metaid="_7c20c035-8866-4746-b496-301120428604" name="R_4PCPpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c20c035-8866-4746-b496-301120428604"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAabcO" metaid="_90b16213-e7d2-411d-b1ed-0013b8613160" name="R_NAabcO" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021120 AND XFCFBP8418_021130</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_90b16213-e7d2-411d-b1ed-0013b8613160"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021130"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2KMBT" metaid="f1a1c730-db43-4466-a772-458b812137cd" name="R_2KMBT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005040</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f1a1c730-db43-4466-a772-458b812137cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTA" metaid="e95b15cd-248a-4abb-a36f-35144913809a" name="aspartate_aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e95b15cd-248a-4abb-a36f-35144913809a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR" metaid="_94d10b09-024a-445a-8d66-a125d9fb50c2" name="R_PAPSR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_002720 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013260 )</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94d10b09-024a-445a-8d66-a125d9fb50c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MI1PP" metaid="_0d316631-0afb-4f33-b35e-c64235d6181e" name="myo_inositol_1_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d316631-0afb-4f33-b35e-c64235d6181e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mi1p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRtex" metaid="_539d49b0-6c42-4f0d-a4db-99cd9e9170ec" name="L_threonine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_539d49b0-6c42-4f0d-a4db-99cd9e9170ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPDPK" metaid="ad8b408e-94ae-44ef-9198-2abaf8be91de" name="GTP_diphosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad8b408e-94ae-44ef-9198-2abaf8be91de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPDPS" metaid="ec6cff5d-8296-47ac-8a91-e527cab00288" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__ipdp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec6cff5d-8296-47ac-8a91-e527cab00288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THZPSN3" metaid="_79d778ee-f268-475b-904d-75de8270c000" name="R_THZPSN3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011380</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79d778ee-f268-475b-904d-75de8270c000"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDC" metaid="fa70a149-fa80-4865-a57a-8ec9bf0cab35" name="arginine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa70a149-fa80-4865-a57a-8ec9bf0cab35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPH4S" metaid="a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250" name="6_carboxy_5_6_7_8_tetrahydropterin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015860</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.2.50</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3fa9d7a-5460-4c20-ad12-9d3ba1c2f250"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015860"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FGLU" metaid="_81c035f4-7607-4bb9-b2c0-a35fed0105e0" name="formimidoylglutamase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.3.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_81c035f4-7607-4bb9-b2c0-a35fed0105e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYTRS" metaid="_7606a995-7800-4ec6-abe8-9acad743b6ef" name="Glycyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000870 AND XFCFBP8418_000880</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7606a995-7800-4ec6-abe8-9acad743b6ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000880"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000870"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnagly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glytrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtonex" metaid="_12a36d85-5cbd-4a3e-b15f-500bd8fa2600" name="R_FEENTERtonex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_014300 ) OR ( No_Assignment AND XFCFBP8418_014310 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_12a36d85-5cbd-4a3e-b15f-500bd8fa2600"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014300"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014310"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_feenter_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_feenter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALS" metaid="_91b2e54f-265a-45e4-a8de-d215e3c74426" name="malate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 2.3.3.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_91b2e54f-265a-45e4-a8de-d215e3c74426"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANabcpp" metaid="c89c8704-8b34-431c-a0b6-f45ed6f5893b" name="R_14GLUCANabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_004950 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c89c8704-8b34-431c-a0b6-f45ed6f5893b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004950"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUtex" metaid="d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a" name="D_fructose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d305996b-e7c1-40e5-bfa7-0ae4b7bf8e4a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTS5" metaid="d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2" name="Biotin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014650</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6e0e695-c2ba-4aa1-b31c-6a06dfa60da2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPpp" metaid="edf59a77-9d26-46f1-ab8e-1da894ac3f51" name="undecaprenyl_diphosphatase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#edf59a77-9d26-46f1-ab8e-1da894ac3f51"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTRI" metaid="_6fb97570-f876-42d0-87aa-3dd19fb12fc0" name="R_MTRI" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012050</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 5.3.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fb97570-f876-42d0-87aa-3dd19fb12fc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Niabcpp" metaid="_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b" name="R_Niabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d7bcd38-06ed-4a02-83d8-9a04a3cdf12b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDEP1pp" metaid="_2ee3178f-cd5c-46ed-957e-64b4d013309c" name="murein_L_D_endopeptidase__murein3px3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2ee3178f-cd5c-46ed-957e-64b4d013309c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THDPS" metaid="_4c9752db-6ac6-41d6-ac69-c036ee50633f" name="tetrahydrodipicolinate_succinylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015100</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.117</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c9752db-6ac6-41d6-ac69-c036ee50633f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.117"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR60" metaid="_161e1c42-26df-4803-9482-c44d8809627b" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_161e1c42-26df-4803-9482-c44d8809627b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hhexACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KARA2" metaid="_7137640b-08fb-4d48-a493-848e538f96e4" name="ketol_acid_reductoisomerase__2_Acetolactate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.86</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7137640b-08fb-4d48-a493-848e538f96e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.86"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL60t2pp" metaid="_8114a03e-0693-4d24-b01b-0073a5bdf075" name="fatty_acid_CoA_ligase__hexanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8114a03e-0693-4d24-b01b-0073a5bdf075"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxa_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_14GLUCANtex" metaid="_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7" name="R_14GLUCANtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6fad67d1-09ba-4d18-95e0-5bf1cc1498b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_14aglucan_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD120" metaid="_76125732-dfb4-4bed-a454-8c2ed827159b" name="Phosphatidylserine_decarboxylase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76125732-dfb4-4bed-a454-8c2ed827159b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2t3pp" metaid="_6a6be6f5-942a-4c62-acf5-19dfca4f0912" name="cadmium__Cd_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a6be6f5-942a-4c62-acf5-19dfca4f0912"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cd2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPTRS" metaid="_40319eaf-9e30-43a6-8522-e4712915748d" name="Tryptophanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007540</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_40319eaf-9e30-43a6-8522-e4712915748d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trptrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSTtex" metaid="cdc4a2be-7fbd-47c8-bbc2-eee17a32869f" name="inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdc4a2be-7fbd-47c8-bbc2-eee17a32869f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPT" metaid="ac1bd227-b716-4bab-8df7-0a75519b747f" name="R_ASPT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002100</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 4.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac1bd227-b716-4bab-8df7-0a75519b747f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS" metaid="f804cee3-3765-4d25-9e4a-ea4f4f6cadb3" name="Seryl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f804cee3-3765-4d25-9e4a-ea4f4f6cadb3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sertrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGCDr" metaid="e85307f9-e4f6-4d24-9b95-facdb10b26c3" name="phosphoglycerate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020190</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.95</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e85307f9-e4f6-4d24-9b95-facdb10b26c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.95"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOVBCNtpp" metaid="_5ca19ded-359b-4743-946b-f3d0123a11cc" name="Novobiocin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ca19ded-359b-4743-946b-f3d0123a11cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_novbcn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_novbcn_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROTRS" metaid="_38f0455e-f7aa-40da-b02b-4a5a0eef5801" name="Prolyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007370</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38f0455e-f7aa-40da-b02b-4a5a0eef5801"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnapro_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_protrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DUTPDP" metaid="_33f29952-a3e2-4221-b99e-dd06006a5693" name="dUTP_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015440</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_33f29952-a3e2-4221-b99e-dd06006a5693"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDRPDr" metaid="_3db595ad-5b6f-402f-b8aa-1e235cb8fd82" name="R_MDRPDr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020230</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 4.2.1.109</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3db595ad-5b6f-402f-b8aa-1e235cb8fd82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.109"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mdru1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD40" metaid="_37eaf0db-57f8-422f-922e-522d13770c11" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37eaf0db-57f8-422f-922e-522d13770c11"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3haACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSK" metaid="_85d5b406-f57f-4a73-a44b-6d017b59b2cf" name="adenylyl_sulfate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002680</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85d5b406-f57f-4a73-a44b-6d017b59b2cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS120pp" metaid="ffa558f1-d74d-4319-8b63-06f62ee79683" name="cardiolipin_synthase__periplasmic__n_C12_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffa558f1-d74d-4319-8b63-06f62ee79683"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn120_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP2App" metaid="dd16bec1-cf8a-4c14-bab2-2885cf18c2f2" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd16bec1-cf8a-4c14-bab2-2885cf18c2f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtex" metaid="_126d4486-6fa6-4692-86ce-1a5e2e9b50cb" name="nitric_oxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_126d4486-6fa6-4692-86ce-1a5e2e9b50cb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Mntex" metaid="_9278d2b5-4c10-4130-b169-9dbfd6a40161" name="R_Mntex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9278d2b5-4c10-4130-b169-9dbfd6a40161"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSS" metaid="df3e285e-9030-481d-8b06-a7ffb62ea79f" name="adenylosuccinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007280</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df3e285e-9030-481d-8b06-a7ffb62ea79f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2pp" metaid="_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75" name="R_ASPt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0cc2f9de-5d1d-4e44-ad6b-89dda6af0c75"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L" metaid="f85ea233-7154-4528-9ab6-5937dd7ca44a" name="L_alanine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004540</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f85ea233-7154-4528-9ab6-5937dd7ca44a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DADK" metaid="_235f4e1e-11ac-4a32-a0a9-c87385ecabab" name="deoxyadenylate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_235f4e1e-11ac-4a32-a0a9-c87385ecabab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SOTA" metaid="b07c5ae3-e117-4a7c-814f-c83d7c3e8d21" name="R_SOTA" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.6.1.81</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b07c5ae3-e117-4a7c-814f-c83d7c3e8d21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.81"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_sucorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucgsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOHMT" metaid="_30aa2606-8808-4ee6-b4d3-e1953050bd8d" name="3_methyl_2_oxobutanoate_hydroxymethyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026560</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30aa2606-8808-4ee6-b4d3-e1953050bd8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTtex" metaid="_19670ffc-772f-4621-82ba-26b98dad7052" name="4_aminobutyrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19670ffc-772f-4621-82ba-26b98dad7052"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDC_r" metaid="eec6cf3f-516d-4536-ad2a-73e98b8c0ef7" name="R_AGDC_r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003030</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.5.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eec6cf3f-516d-4536-ad2a-73e98b8c0ef7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDCAtex" metaid="a4794958-bba0-4dc7-a430-957e7a1309f8" name="Fatty_acid__dodecanoate__transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a4794958-bba0-4dc7-a430-957e7a1309f8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGAATXF" metaid="_92feb24f-ded7-468f-8410-4bc2fc8122be" name="R_UAGAATXF" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024900</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.129</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_92feb24f-ded7-468f-8410-4bc2fc8122be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.129"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtex" metaid="baa6d16a-533f-48ab-bb79-4bf53824fedf" name="R_GLYALDtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#baa6d16a-533f-48ab-bb79-4bf53824fedf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyald_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP10" metaid="_251cd69f-59b0-4bbf-b9f8-66c81ff22528" name="R_NTP10" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_251cd69f-59b0-4bbf-b9f8-66c81ff22528"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPI" metaid="_84ca884c-785c-4589-85e2-e29eef61eec5" name="ribose_5_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001410</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 5.3.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84ca884c-785c-4589-85e2-e29eef61eec5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCabcpp" metaid="d99d80ac-fea2-4614-8aaa-d22c5dd79db6" name="sn_glycerol_3_phosphocholine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d99d80ac-fea2-4614-8aaa-d22c5dd79db6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBDR" metaid="_442b5b18-fb55-4449-85d6-4a8667c22950" name="DsbD_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_006350 ) OR ( XFCFBP8418_006350 AND XFCFBP8418_013260 )</p> + <p>SUBSYSTEM: Electron_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_442b5b18-fb55-4449-85d6-4a8667c22950"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALabcpp" metaid="_4d8072c0-c917-4e4e-a984-3634d31f3449" name="L_valine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d8072c0-c917-4e4e-a984-3634d31f3449"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_val_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RPE" metaid="ff31b7d8-2c37-4322-b512-edbde18d8a5e" name="ribulose_5_phosphate_3_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026760</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 5.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff31b7d8-2c37-4322-b512-edbde18d8a5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANS" metaid="_32366fd1-5082-48d5-9646-3b28a7410c5b" name="anthranilate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000460 AND XFCFBP8418_026730</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32366fd1-5082-48d5-9646-3b28a7410c5b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBP4E" metaid="_5779744d-e37e-46e1-9e95-8626d440d7cd" name="R_RBP4E" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5779744d-e37e-46e1-9e95-8626d440d7cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNS1" metaid="_7696c780-6ae3-4c99-bea7-10c42051dcf3" name="asparagine_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015130</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 6.3.5.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7696c780-6ae3-4c99-bea7-10c42051dcf3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METAT" metaid="_1a1c7d09-cd76-4de7-9a5d-34f2985e9750" name="methionine_adenosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007840</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a1c7d09-cd76-4de7-9a5d-34f2985e9750"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR80" metaid="_678394b3-e582-47f4-8c48-c9f82945157a" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_678394b3-e582-47f4-8c48-c9f82945157a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ooctACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hoctACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOATXF" metaid="_799bdd79-bad4-4a86-bf82-e735bb863477" name="R_MOATXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015030</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.99.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_799bdd79-bad4-4a86-bf82-e735bb863477"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdolipid4_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PCtex" metaid="_0ca2baad-8ff8-4b02-ba9a-e729b34adff4" name="glycero_3_phosphocholine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ca2baad-8ff8-4b02-ba9a-e729b34adff4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pc_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MINCYCtpp" metaid="_727f254d-6d71-41dc-bc05-174f23061000" name="Minocycline_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_727f254d-6d71-41dc-bc05-174f23061000"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mincyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mincyc_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPMDr" metaid="b277d274-82b8-4a71-93f9-cdcfa5c407cf" name="3_isopropylmalate_dehydrogenase_reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021500</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b277d274-82b8-4a71-93f9-cdcfa5c407cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SBPA" metaid="_48b9cc5a-09a5-43de-b499-b30b85b199b8" name="R_SBPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_48b9cc5a-09a5-43de-b499-b30b85b199b8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBP" metaid="_95eaacc1-00ea-4f90-8f6f-8f850fed1a29" name="fructose_bisphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95eaacc1-00ea-4f90-8f6f-8f850fed1a29"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AOXSr2" metaid="_9400c890-2a59-4627-8ad7-0b5bd92d25c9" name="8_amino_7_oxononanoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9400c890-2a59-4627-8ad7-0b5bd92d25c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNtex" metaid="_30d623cd-3157-42a3-857b-b4161c1f0c44" name="ornithine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007710</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30d623cd-3157-42a3-857b-b4161c1f0c44"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PIuabcpp" metaid="_7758ea08-9ec7-40bd-80df-08c4841b230d" name="phosphate_transport_via_ABC_system__uptake__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019420 AND XFCFBP8418_019430 AND XFCFBP8418_019440 AND XFCFBP8418_019450</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7758ea08-9ec7-40bd-80df-08c4841b230d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSTPTr" metaid="_9e184f17-f727-4bc1-b67b-703973f1bb91" name="histidinol_phosphate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020310</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e184f17-f727-4bc1-b67b-703973f1bb91"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERTRS2" metaid="d1db8a88-2e24-4a99-bfa5-e80896799f4d" name="Seryl_tRNA_synthetase__selenocystein_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020870</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1db8a88-2e24-4a99-bfa5-e80896799f4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnasecys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sertrna_sec_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tex" metaid="c3700227-200a-4301-b3ac-fe1269c357f5" name="oxygen_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3700227-200a-4301-b3ac-fe1269c357f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRS" metaid="b8637038-f275-43b8-aa77-1e32c48fd80a" name="Glutamyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011070</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8637038-f275-43b8-aa77-1e32c48fd80a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUTRR" metaid="_6633a907-f3e1-4193-98fb-693bd2edb998" name="glutamyl_tRNA_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012920</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 1.2.1.70</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6633a907-f3e1-4193-98fb-693bd2edb998"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.70"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012920"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FADRx2" metaid="_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8" name="R_FADRx2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a31ffcd-1cd7-4991-ac9c-75f24efdafd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGt2rpp" metaid="_56babd7d-178d-4e30-bbe7-37be8f99c75c" name="2_oxoglutarate_reversible_transport_via_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_56babd7d-178d-4e30-bbe7-37be8f99c75c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP4pp" metaid="_4f680622-675b-4d0b-befc-1ac754cc150a" name="murein_D_D_carboxypeptidase__murein5p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f680622-675b-4d0b-befc-1ac754cc150a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_GCALD" metaid="c82549a2-429a-4622-b277-a2d927e5780d" name="R_DM_GCALD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c82549a2-429a-4622-b277-a2d927e5780d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCEAtexi" metaid="_308a73d2-096d-4b14-be3e-96175ac517ba" name="R_OCDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_308a73d2-096d-4b14-be3e-96175ac517ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMtpp" metaid="a13b6201-035d-4799-b18e-bf3f1fa52249" name="Chloramphenicol_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a13b6201-035d-4799-b18e-bf3f1fa52249"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_cm_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cm_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMEACPE" metaid="_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba" name="Pimeloyl__ACP__methyl_ester_esterase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68a9ebb6-f1c6-44c4-a5c8-7dcee09ae7ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pimACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK1" metaid="_49cdf00d-bed3-479b-b154-c0f5fb59388e" name="adenylate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49cdf00d-bed3-479b-b154-c0f5fb59388e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140pp" metaid="_7a8ec943-7c19-4990-a3f3-03e43ff54b22" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a8ec943-7c19-4990-a3f3-03e43ff54b22"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRTT" metaid="_9978b685-ed01-4b71-bb18-16a6d0e1db8b" name="geranyltranstransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9978b685-ed01-4b71-bb18-16a6d0e1db8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtex" metaid="_6083e642-12b7-4961-a2ab-988dc5346324" name="R_FUCtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6083e642-12b7-4961-a2ab-988dc5346324"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fuc_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3PH" metaid="_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tripeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bcf5dcc-ce35-4973-8e5d-a3acbefbccb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhm3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX" metaid="baa53e94-4e56-4a8a-800d-80dc093d5834" name="hydroxyacylglutathione_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019610</p> + <p>SUBSYSTEM: Methylglyoxal_degradation</p> + <p>EC_NUMBER: 3.1.2.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#baa53e94-4e56-4a8a-800d-80dc093d5834"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FBA" metaid="d57285eb-dacd-4631-8872-dbaec147930d" name="fructose_bisphosphate_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011030</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 4.1.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d57285eb-dacd-4631-8872-dbaec147930d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DOXRBCNtpp" metaid="b12b499f-3972-4815-a88a-a9317ef5d311" name="Doxorubicin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12b499f-3972-4815-a88a-a9317ef5d311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_doxrbcn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_doxrbcn_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AS" metaid="e2a33de6-8ba2-4520-9b91-68d823beb82f" name="R_AP4AS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2a33de6-8ba2-4520-9b91-68d823beb82f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK3" metaid="_3c33c4b5-38c9-4e55-a928-726c79ddb1d2" name="adentylate_kinase__GTP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3c33c4b5-38c9-4e55-a928-726c79ddb1d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOATA" metaid="d134947b-2d61-43dc-ad87-3586854783f4" name="Acetyl_CoA_ACP_transacylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_017940</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d134947b-2d61-43dc-ad87-3586854783f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADK4" metaid="d80fc4ec-a1a3-48fc-b5d9-663765d5ee43" name="adentylate_kinase__ITP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d80fc4ec-a1a3-48fc-b5d9-663765d5ee43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_idp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APRAUR" metaid="_70c48d46-da92-46e2-baa8-b8192e76e959" name="5_amino_6__5_phosphoribosylamino_uracil_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.193</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70c48d46-da92-46e2-baa8-b8192e76e959"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.193"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2ST" metaid="d88fa6b4-43b9-414c-84e2-b3f14db7a4c3" name="R_S2FE2ST" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d88fa6b4-43b9-414c-84e2-b3f14db7a4c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPADSSXF" metaid="c6e32931-814b-41c7-a454-7f0a8ecffa84" name="R_LPADSSXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.182</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6e32931-814b-41c7-a454-7f0a8ecffa84"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.182"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidX_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPDPK" metaid="d6fbd975-bf2e-4c02-a28a-48d1ab9741ae" name="GDP_diphosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004340 ) OR ( XFCFBP8418_008750 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6fbd975-bf2e-4c02-a28a-48d1ab9741ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AICART" metaid="_743b940c-dc47-4773-af74-6f8f53223744" name="phosphoribosylaminoimidazolecarboxamide_formyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_743b940c-dc47-4773-af74-6f8f53223744"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS" metaid="df79ddf3-b54a-400f-9ed3-c4a7a1293421" name="R_S2FE2SS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df79ddf3-b54a-400f-9ed3-c4a7a1293421"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SR" metaid="ad865030-3d0f-46b0-ae92-d51f2fe675ea" name="R_S2FE2SR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ad865030-3d0f-46b0-ae92-d51f2fe675ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2fe1s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPDH5" metaid="_3dcaee8e-0581-4fd2-a58e-36c336cea301" name="R_MECDPDH5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012250 AND XFCFBP8418_023100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dcaee8e-0581-4fd2-a58e-36c336cea301"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012250"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023100"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNDH" metaid="_4504abff-43dd-4a5c-8d7d-c99bfd5232d8" name="prephenate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4504abff-43dd-4a5c-8d7d-c99bfd5232d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2t3pp" metaid="_413f9a7c-17cb-4b24-a54b-9139a7907c2c" name="cobalt__Co_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_413f9a7c-17cb-4b24-a54b-9139a7907c2c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG2" metaid="ea8026d5-3079-404e-ae94-de7266c66bb9" name="murein_polymerizing_transglycosylase_2__three_linked_units_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea8026d5-3079-404e-ae94-de7266c66bb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5p5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAPD" metaid="b831af11-11e9-46cd-a767-98d8e6ae317b" name="glyceraldehyde_3_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 1.2.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b831af11-11e9-46cd-a767-98d8e6ae317b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYK" metaid="_043c5f9c-0c78-4d01-b3a3-8e821cd2855f" name="pyruvate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011050</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_043c5f9c-0c78-4d01-b3a3-8e821cd2855f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tex" metaid="_31c3858e-2a09-490c-83ca-e7646693cc58" name="R_QUIN2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31c3858e-2a09-490c-83ca-e7646693cc58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_quin_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTBSptspp" metaid="a7cd7347-243a-4ea4-86c6-cc55b9b7ce10" name="R_CHTBSptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a7cd7347-243a-4ea4-86c6-cc55b9b7ce10"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chtbs6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPPGO" metaid="_3a1ca359-53dd-4137-a384-4c4aed4c2efb" name="protoporphyrinogen_oxidase__aerobic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.3.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a1ca359-53dd-4137-a384-4c4aed4c2efb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1.5"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP_L" metaid="_486e5a3f-1611-4213-a1af-da0364cd412c" name="phosphoserine_phosphatase__L_serine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_486e5a3f-1611-4213-a1af-da0364cd412c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG140abcpp" metaid="d569cf55-f1ce-4fac-a614-263236ad327b" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d569cf55-f1ce-4fac-a614-263236ad327b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BHEXAMD_p" metaid="b1754b01-de38-4b32-909c-2c8a0bf2f851" name="R_BHEXAMD_p" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1754b01-de38-4b32-909c-2c8a0bf2f851"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IG3PS" metaid="_8316c47c-13b2-4967-96d9-149ef52f5e2b" name="Imidazole_glycerol_3_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020270 AND XFCFBP8418_020290</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8316c47c-13b2-4967-96d9-149ef52f5e2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020270"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2t3pp" metaid="_89074f04-5c71-4b22-87a4-e9cc5b218486" name="zinc__Zn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89074f04-5c71-4b22-87a4-e9cc5b218486"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_zn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1Bpp" metaid="_43d8c899-b964-402b-8cc3-5b322c5cebdd" name="murein_crosslinking_transpeptidase_1B__A2pm__A2pm___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43d8c899-b964-402b-8cc3-5b322c5cebdd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG181abcpp" metaid="ae101868-39b2-4394-b08d-b200e2aeacda" name="phosphatidylglycerol_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae101868-39b2-4394-b08d-b200e2aeacda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPTE" metaid="_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0" name="R_DHNPTE" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 5.1.99.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c5a9fe1-95bb-4d1c-96ca-65e1bbf685c0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.99.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhmpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HYXNtpp" metaid="_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e" name="R_HYXNtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a5f98fb-3bd4-4023-8a75-76dcf7743a8e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_E4P" metaid="_16143a2a-81df-4625-8e0d-024f7c1d9265" name="R_DM_E4P" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16143a2a-81df-4625-8e0d-024f7c1d9265"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEtex" metaid="_7fb97607-e83e-4f04-a22b-61d665599138" name="L_isoleucine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7fb97607-e83e-4f04-a22b-61d665599138"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ile_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK1" metaid="b35cfab3-f230-41ae-ba8f-262dcad25287" name="cytidylate_kinase__CMP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b35cfab3-f230-41ae-ba8f-262dcad25287"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2abcpp" metaid="_62738479-cf85-4018-aec9-41eed2607914" name="R_METSOX2abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62738479-cf85-4018-aec9-41eed2607914"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRPS2" metaid="d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a" name="R_TRPS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003820 AND XFCFBP8418_003830</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4ee51b8-8b6e-4e04-a97f-5f9d65da4c9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003820"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trp_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD" metaid="_27d1f9b3-342a-4707-8c9e-b20105bc33ac" name="dCTP_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27d1f9b3-342a-4707-8c9e-b20105bc33ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL140t2pp" metaid="d0a9a803-5d82-4d2a-8f86-12aad13447e7" name="fatty_acid_CoA_ligase__tetradecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0a9a803-5d82-4d2a-8f86-12aad13447e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA181abcpp" metaid="_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba" name="phosphatidate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2882c2e6-f3ce-42a7-9e5b-a3a5b2a932ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYKr" metaid="_01d621a5-aaa8-4c78-95a3-bd1c60708a0a" name="glycerol_kinase__reversible_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020720</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01d621a5-aaa8-4c78-95a3-bd1c60708a0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP120" metaid="_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f9dd26b-c6e9-445b-8eb1-8aec7dd5ab14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt4pp" metaid="_719fa133-2460-4968-a297-4a346376a133" name="R_GLUt4pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_719fa133-2460-4968-a297-4a346376a133"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtpp" metaid="b9b2cd98-3901-4d60-8afc-ebd4c46d93cd" name="R_GUAtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9b2cd98-3901-4d60-8afc-ebd4c46d93cd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NODOy" metaid="bea88a6d-157a-4674-a63a-db6fec619225" name="nitric_oxide_dioxygenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014590</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 1.14.12.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bea88a6d-157a-4674-a63a-db6fec619225"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.12.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_no_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_no3_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTMPK" metaid="_0da9684f-202c-4ba5-b34c-5a0cf61f6192" name="dTMP_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006690</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0da9684f-202c-4ba5-b34c-5a0cf61f6192"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCOAS" metaid="ea388af7-db37-4569-8f66-ef10468d4987" name="succinyl_CoA_synthetase__ADP_forming_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011960 AND XFCFBP8418_011970</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 6.2.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea388af7-db37-4569-8f66-ef10468d4987"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011970"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011960"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTK2" metaid="e66be1e9-3407-4b0b-ac83-de6a60fa30fe" name="cytidylate_kinase__dCMP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004870</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e66be1e9-3407-4b0b-ac83-de6a60fa30fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PNTK" metaid="da5808be-1ffe-4b03-837f-0c48cf839c38" name="pantothenate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018190</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#da5808be-1ffe-4b03-837f-0c48cf839c38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPPT3" metaid="c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65" name="phospho_N_acetylmuramoyl_pentapeptide_transferase__meso_2_6_diaminopimelate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011280</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.8.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1fdd5ff-6f8e-4c9e-a65a-87170bae8b65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT1" metaid="_121569c1-aca4-4a43-a54e-7ab8a6ad28d1" name="R_HEPT1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_121569c1-aca4-4a43-a54e-7ab8a6ad28d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hlipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR161tipp" metaid="abe99089-4242-4fb7-92aa-8e1384b39616" name="R_12DGR161tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#abe99089-4242-4fb7-92aa-8e1384b39616"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr161_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNAMr" metaid="_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b" name="nicotinamidase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020780</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45edd948-9a91-4a3d-ae9c-7d5a9ef1047b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD5" metaid="e0007e94-29e4-4615-90ae-66b2a8ea76f4" name="glycerol_3_phosphate_dehydrogenase__ubiquinone_8_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020700</p> + <p>SUBSYSTEM: Glycerol_Degradation</p> + <p>EC_NUMBER: 1.1.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0007e94-29e4-4615-90ae-66b2a8ea76f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCI" metaid="_8228c5ad-649a-49e1-be1f-4c1f6da9d41b" name="GTP_cyclohydrolase_I" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8228c5ad-649a-49e1-be1f-4c1f6da9d41b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEPT3" metaid="_61f4e47d-1ec6-4b63-8e55-8290a85c1049" name="R_HEPT3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019540</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61f4e47d-1ec6-4b63-8e55-8290a85c1049"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adphep_LD_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phhlipidA_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hphhlipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PD2" metaid="f56c2f7a-1537-4b9c-bbf8-8645b86821d8" name="glycerol_3_phosphate_dehydrogenase__NADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018110</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.94</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f56c2f7a-1537-4b9c-bbf8-8645b86821d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.94"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018110"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtex" metaid="_5f683c5e-d94b-4fef-839b-3363659b8be3" name="Nicotinic_acid_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f683c5e-d94b-4fef-839b-3363659b8be3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nac_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CG" metaid="_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f" name="R_P5CG" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01ee6104-d3d1-4fbc-ba9e-8651bff7eb2f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGS" metaid="_297a559f-86bd-4d65-9a6d-81df9ee5d9ea" name="7_deaza_7_carboxyguanine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.3.99.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_297a559f-86bd-4d65-9a6d-81df9ee5d9ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.99.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cph4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD" metaid="bf8bce5c-5964-426a-8ddd-934248037087" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bf8bce5c-5964-426a-8ddd-934248037087"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDGR" metaid="b12453cd-1703-4b8e-8a28-dd0d81dc44ad" name="7_cyano_7_deazaguanine_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.7.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12453cd-1703-4b8e-8a28-dd0d81dc44ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.7.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_preq1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGK1" metaid="_9f81734d-b4bd-41d4-8ddf-79e9695a25a9" name="deoxyguanylate_kinase__dGMP_ATP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9f81734d-b4bd-41d4-8ddf-79e9695a25a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT120" metaid="_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5" name="R_G3PAT120" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fbb9223-3e34-4dca-b9f7-5d7ab75b20e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETRS" metaid="d7ced00b-f100-410f-aaeb-4d131894d762" name="Phenylalanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011750 AND XFCFBP8418_011760</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7ced00b-f100-410f-aaeb-4d131894d762"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011760"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGLYCP" metaid="b7c0d0ef-b131-43f4-8db4-e4314519c5a0" name="Phosphoglycolate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.3.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7c0d0ef-b131-43f4-8db4-e4314519c5a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2pglyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGtex" metaid="c0a2be14-66bf-4a69-91bb-52745a063137" name="L_arginine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0a2be14-66bf-4a69-91bb-52745a063137"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAS" metaid="_6ebf5651-80a6-4232-ac63-3082145b32ca" name="UDP_N_acetylmuramoyl_L_alanine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ebf5651-80a6-4232-ac63-3082145b32ca"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNUC" metaid="_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec" name="adenosine_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36c795ab-3c17-4599-a6b7-1b9a0fd6f7ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNt2pp" metaid="c3206781-27f3-4c37-9dc2-c78669cf6757" name="R_ADNt2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3206781-27f3-4c37-9dc2-c78669cf6757"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NOtpp" metaid="_78e5aea7-2ac6-4a3c-830f-daf94491487e" name="NO_transport__diffusion_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_78e5aea7-2ac6-4a3c-830f-daf94491487e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLtex" metaid="fa6915be-2f49-4f71-8fcd-6aebad75ef47" name="R_XYLtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa6915be-2f49-4f71-8fcd-6aebad75ef47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CR" metaid="_158dba30-14f5-401a-b1d8-12dcb1535288" name="pyrroline_5_carboxylate_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_158dba30-14f5-401a-b1d8-12dcb1535288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL120t2pp" metaid="_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6" name="fatty_acid_CoA_ligase__dodecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94eba020-6f77-43c1-9fe5-bb1bd7e6aad6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddca_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSTRS" metaid="_018c56f1-8d37-413b-bb73-e5f0af6dc277" name="Lysyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023900</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_018c56f1-8d37-413b-bb73-e5f0af6dc277"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lystrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY4pp" metaid="b2dfa850-588a-40c9-a419-56474c2e0f12" name="murein_lytic_transglycosylase__murein4px4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2dfa850-588a-40c9-a419-56474c2e0f12"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4px4p4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGLCUR4EP" metaid="_272c6c48-7392-44f5-8b9d-7f29e040131e" name="R_UDPGLCUR4EP" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.1.3.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_272c6c48-7392-44f5-8b9d-7f29e040131e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTPAT" metaid="f30e63e6-c461-4c82-be34-8bca956defa3" name="pantetheine_phosphate_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f30e63e6-c461-4c82-be34-8bca956defa3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GRXR" metaid="a46ca013-5f71-401c-8638-1c1d74832e05" name="glutaredoxin_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012410</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.8.4.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a46ca013-5f71-401c-8638-1c1d74832e05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUDxi" metaid="bc91dd32-ffce-4384-a9af-332161bfeedb" name="R_GLUDxi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001660</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 1.4.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc91dd32-ffce-4384-a9af-332161bfeedb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCBT" metaid="_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc" name="ornithine_carbamoyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025290</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5964bf74-d6e5-4ce0-93d3-c13c6acea5bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEPCT" metaid="_17165073-998e-4383-8135-c93aeb2917b9" name="2_C_methyl_D_erythritol_4_phosphate_cytidylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022200</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17165073-998e-4383-8135-c93aeb2917b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PL" metaid="_53df3af8-acf6-4da2-bf15-451e744c9a05" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_D_alanine_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 6.3.2.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53df3af8-acf6-4da2-bf15-451e744c9a05"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141" metaid="_73fd0d3c-0584-4c1b-948f-a56883aee2d2" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73fd0d3c-0584-4c1b-948f-a56883aee2d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_o2_e" metaid="_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92" name="R_EX_o2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_646a44a4-5b92-488c-9b8e-b9fe9e3dfa92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_o2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADMDCr" metaid="_4822dbc6-d580-47d8-9c1c-9835a304b3e9" name="Adenosylmethionine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.50</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4822dbc6-d580-47d8-9c1c-9835a304b3e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.50"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP140" metaid="e4b730ae-8294-4c36-b8a6-d0a83b9a9a82" name="phosphatidylglycerol_phosphate_phosphatase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4b730ae-8294-4c36-b8a6-d0a83b9a9a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOACr" metaid="_9a723345-b105-440f-adb5-ccdf64f4e741" name="R_ACCOACr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003020 AND XFCFBP8418_014550 AND XFCFBP8418_014560 AND XFCFBP8418_026800</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 6.4.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a723345-b105-440f-adb5-ccdf64f4e741"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.4.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026800"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014560"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014550"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ULA4NFT" metaid="_6b3c7323-6ecc-41de-ac76-774c1351a483" name="R_ULA4NFT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b3c7323-6ecc-41de-ac76-774c1351a483"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4n_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4fn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAtex" metaid="f361a2e8-85b7-41d8-9aeb-6581c6c97fdd" name="R_URAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f361a2e8-85b7-41d8-9aeb-6581c6c97fdd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ura_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP2pp" metaid="_53a270fc-b2b1-44b6-850e-cd29a6c12160" name="murein_D_D_endopeptidase__murein3px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_53a270fc-b2b1-44b6-850e-cd29a6c12160"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAIS" metaid="_8aceeb76-a43c-4b0b-80c2-3932021ab547" name="phosphoribosylaminoimidazole_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006650</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8aceeb76-a43c-4b0b-80c2-3932021ab547"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cobalt2_e" metaid="_089057f2-9126-4ed3-9ed5-549b47a61c69" name="R_EX_cobalt2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_089057f2-9126-4ed3-9ed5-549b47a61c69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULabcpp" metaid="eb51e90d-10c2-448b-96d2-005c175b90c1" name="sulfate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb51e90d-10c2-448b-96d2-005c175b90c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP160abcpp" metaid="_2bcff870-8734-42d6-a979-38b35526bbce" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bcff870-8734-42d6-a979-38b35526bbce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtpp" metaid="_4c8dad63-4c56-4843-8e1b-dcd6a2151f97" name="R_ACALDtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c8dad63-4c56-4843-8e1b-dcd6a2151f97"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDtex" metaid="_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e" name="R_CYSDtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17999d1d-0dac-4cb1-a5b1-b1cb4734d30e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMQMT" metaid="f192174a-4e57-4847-bd91-879239e05dbe" name="3_Dimethylubiquinonol_3_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.64</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f192174a-4e57-4847-bd91-879239e05dbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.64"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDabcpp" metaid="c5945588-1dab-4e2e-ac23-11a842cff4b9" name="spermidine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5945588-1dab-4e2e-ac23-11a842cff4b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO5" metaid="c9b32a8b-ef71-4fc9-84f2-8f381ce673cc" name="L_aspartate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9b32a8b-ef71-4fc9-84f2-8f381ce673cc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGCVT" metaid="d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1" name="UDP_N_acetylglucosamine_1_carboxyvinyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003450</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d78d7c18-3e2f-4bb8-ae04-6dcad5b190d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO3" metaid="df514e5b-3ab3-485e-99b3-e3f85b6fb9d6" name="R_ASPO3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df514e5b-3ab3-485e-99b3-e3f85b6fb9d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h2o_e" metaid="_61cec249-2342-4783-8c02-2d66ef9bd2b7" name="R_EX_h2o_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61cec249-2342-4783-8c02-2d66ef9bd2b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFR2" metaid="_152f1441-c730-4edb-8fe8-db9ebe5ffd36" name="5_10_methylenetetrahydrofolate_reductase__NADH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023810</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 1.5.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_152f1441-c730-4edb-8fe8-db9ebe5ffd36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Actex" metaid="_79c4f963-40f3-4233-8ecd-eaab21f9a788" name="R_Actex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79c4f963-40f3-4233-8ecd-eaab21f9a788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1PACT" metaid="_253f3d72-ff88-4265-a00e-0c4e07886924" name="glucosamine_1_phosphate_N_acetyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.157</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_253f3d72-ff88-4265-a00e-0c4e07886924"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.157"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stpp" metaid="_97e52e9f-73df-4d9e-92d4-050a7fbb8b07" name="R_H2Stpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97e52e9f-73df-4d9e-92d4-050a7fbb8b07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS140pp" metaid="_84c0c025-1c66-4a5a-9f81-a073f398525c" name="cardiolipin_synthase__periplasmic__n_C14_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84c0c025-1c66-4a5a-9f81-a073f398525c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg140_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn140_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UHGADAXF" metaid="_39eef7af-9647-4237-b574-67b855d7791e" name="R_UHGADAXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011190</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.108</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39eef7af-9647-4237-b574-67b855d7791e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.108"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3aga_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPO6" metaid="ecfae277-ee16-4d2b-8dda-a9810b0053c2" name="L_aspartate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecfae277-ee16-4d2b-8dda-a9810b0053c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PANTS" metaid="_16d88e10-4b9d-4556-a796-6b1258ad22fa" name="pantothenate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026550</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16d88e10-4b9d-4556-a796-6b1258ad22fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pnto_R_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_co2_e" metaid="_2711df0f-e364-4cea-8eee-b6f411cdfa9e" name="R_EX_co2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2711df0f-e364-4cea-8eee-b6f411cdfa9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSP" metaid="_4641d575-ba0f-40e8-a26d-932fb2108f61" name="R_PSP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4641d575-ba0f-40e8-a26d-932fb2108f61"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD180" metaid="b94c0c09-7ccb-4593-b50a-9da601600d3c" name="Phosphatidylserine_decarboxylase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b94c0c09-7ccb-4593-b50a-9da601600d3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + 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</bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSD181" metaid="a5849849-8097-47e6-9bf0-a05c53ddde4b" name="Phosphatidylserine_decarboxylase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003930</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 4.1.1.65</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a5849849-8097-47e6-9bf0-a05c53ddde4b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.65"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" 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xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14ff9c79-46cc-4a9b-8e19-bec5265cf89e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR160tipp" metaid="_9ddb6a17-a564-4404-aa8d-38886cdd19b9" name="R_12DGR160tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ddb6a17-a564-4404-aa8d-38886cdd19b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr160_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMBZLM" metaid="_01570b3c-6b93-4c60-9833-0752ff28d461" name="2_Octaprenyl_6_methoxy_benzoquinol_methylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002810</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.201</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01570b3c-6b93-4c60-9833-0752ff28d461"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.201"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULabcpp" metaid="_8460b634-1a44-4244-a0ef-84ccf29747a9" name="thiosulfate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8460b634-1a44-4244-a0ef-84ccf29747a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRTRS" metaid="b8eab933-0fa6-4c20-bedd-edae289ea018" name="Threonyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011800</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8eab933-0fa6-4c20-bedd-edae289ea018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnathr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAGSr" metaid="_013f4f8f-0241-4957-bada-351b1d2228a8" name="phosphoribosylglycinamide_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001040</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_013f4f8f-0241-4957-bada-351b1d2228a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gar_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160" metaid="_2eb409c6-b02a-4490-962f-92cb2676f703" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2eb409c6-b02a-4490-962f-92cb2676f703"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYStex" metaid="ab144e88-6902-4e91-ae5a-c420ed7d4cc7" name="L_cysteine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab144e88-6902-4e91-ae5a-c420ed7d4cc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3E" metaid="c28c9d1c-57dd-419d-925b-53bc5d6054f3" name="HCO3_equilibration_reaction" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010460</p> + <p>SUBSYSTEM: Cyanate_degradation</p> + <p>EC_NUMBER: 4.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c28c9d1c-57dd-419d-925b-53bc5d6054f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161" metaid="_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b" name="phosphatidylglycerol_phosphate_phosphatase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_69083ce4-81a0-4c4a-beaa-6b65e08b2e1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPKr" metaid="_0198f89e-6891-4d38-bcb7-5edf188f5c07" name="thiamine_phosphate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.4.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0198f89e-6891-4d38-bcb7-5edf188f5c07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_FRMD" metaid="ce369cc1-6ad5-4d1b-bf90-592514d09e8b" name="R_DM_FRMD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce369cc1-6ad5-4d1b-bf90-592514d09e8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frmd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS9" metaid="_5bc43a5a-6127-4454-ba97-cb53be9790ed" name="R_AACPS9" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025958</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bc43a5a-6127-4454-ba97-cb53be9790ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025958"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + 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</rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL141t2pp" metaid="_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4" name="fatty_acid_CoA_ligase__tetradecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b52d4fd-a030-47fb-99bf-0a40e19a3cb4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNtex" metaid="_5401ac99-0289-4bde-806c-67175d1ede26" name="Adenosine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5401ac99-0289-4bde-806c-67175d1ede26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rex" metaid="c7e5b008-44fc-4774-91ff-3ac43427dd93" name="R_ACt2rex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7e5b008-44fc-4774-91ff-3ac43427dd93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPG4E" metaid="_4d72f9cb-f661-4f28-9738-3104f805018d" name="UDPglucose_4_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d72f9cb-f661-4f28-9738-3104f805018d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP11" metaid="_39c287d2-22d6-4e29-ba3e-c41135c6196b" name="Nucleoside_triphosphate_pyrophosphorylase__xtp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39c287d2-22d6-4e29-ba3e-c41135c6196b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP10" metaid="ac88c72c-c847-4b90-a7cf-67d2b7d7baba" name="Nucleoside_triphosphate_pyrophosphorylase__ditp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac88c72c-c847-4b90-a7cf-67d2b7d7baba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKP1" metaid="_5f39b478-414d-4cff-80b0-3471249098b5" name="alkaline_phosphatase__Dihydroneopterin_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f39b478-414d-4cff-80b0-3471249098b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP3App" metaid="_46a42bc0-a5a3-4663-b4f2-098b6013a76d" name="murein_L_D_carboxypeptidase__murein5px3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_46a42bc0-a5a3-4663-b4f2-098b6013a76d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3px3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fru_e" metaid="bd070f57-ef0c-4e22-8ebb-4b130fee5e15" name="R_EX_fru_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd070f57-ef0c-4e22-8ebb-4b130fee5e15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G5SD" metaid="_5e5a6203-6e16-45a3-ac35-68474577faeb" name="glutamate_5_semialdehyde_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025220</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.2.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e5a6203-6e16-45a3-ac35-68474577faeb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG120abcpp" metaid="_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d" name="phosphatidylglycerol_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1975a1ad-dcdc-4c11-8cc8-585ca1e0189d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATRS" metaid="_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b" name="Alanyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015200</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_10bf1fc9-8ae9-4c5e-b9a5-1272e728f66b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaala_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alatrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGLT" metaid="f5315705-4bdc-4bd0-bde5-4086d5e04555" name="UDPglucose__hexose_1_phosphate_uridylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.7.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5315705-4bdc-4bd0-bde5-4086d5e04555"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpgal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGDI_1" metaid="_9a35f452-ad2d-45eb-968e-861d802e0d77" name="R_AGDI_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004890</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.3.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a35f452-ad2d-45eb-968e-861d802e0d77"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_agm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICYSDS" metaid="c5d2b5ae-ffc2-4230-b55c-96ce23335f77" name="ISC_Cysteine_desulfuration" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5d2b5ae-ffc2-4230-b55c-96ce23335f77"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscs_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iscssh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS160pp" metaid="_5537e257-21c6-450f-a2aa-66f24e786a4b" name="cardiolipin_synthase__periplasmic__n_C16_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5537e257-21c6-450f-a2aa-66f24e786a4b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UGMDDS" metaid="_6a1f65bb-3745-42d0-938e-35e94dab6724" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimeloyl_D_alanyl_D_alanine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011290</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a1f65bb-3745-42d0-938e-35e94dab6724"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011290"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ugmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2pp" metaid="_3b2d1e9b-1c85-4c12-82dd-7cff859a2796" name="L_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b2d1e9b-1c85-4c12-82dd-7cff859a2796"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS8" metaid="_083a9bec-2e42-4a56-9543-5e74f0b5fbec" name="R_AACPS8" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025957</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_083a9bec-2e42-4a56-9543-5e74f0b5fbec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025957"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETOHtrpp" metaid="be0ab22f-7c5e-46a5-912b-90282c14ca8d" name="R_ETOHtrpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be0ab22f-7c5e-46a5-912b-90282c14ca8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_etoh_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA161" metaid="c5cb8e82-ea82-41ec-97c0-030e7cfc14c8" name="Phosphatidylserine_syntase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5cb8e82-ea82-41ec-97c0-030e7cfc14c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS7" metaid="_881173e0-e214-4f00-9868-da894511bbf9" name="R_AACPS7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025956</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_881173e0-e214-4f00-9868-da894511bbf9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025956"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA160" metaid="_3af0fb3a-041f-49ca-a021-1dff6738a72b" name="Phosphatidylserine_syntase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3af0fb3a-041f-49ca-a021-1dff6738a72b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS6" metaid="_72e77e6a-c3b9-43cc-b100-5758dbd25509" name="R_AACPS6" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025955</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72e77e6a-c3b9-43cc-b100-5758dbd25509"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025955"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MMSAD3" metaid="c4305d14-50b5-4e44-9117-70f366f9fc84" name="methylmalonate_semialdehyde_dehydrogenase__malonic_semialdehyde_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.2.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4305d14-50b5-4e44-9117-70f366f9fc84"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS5" metaid="cc8eef06-b2af-4f40-a78c-dd54928aa991" name="R_AACPS5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025954</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc8eef06-b2af-4f40-a78c-dd54928aa991"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025954"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS4" metaid="_5058549f-0714-424c-bdba-27365bbd9aef" name="R_AACPS4" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025953</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5058549f-0714-424c-bdba-27365bbd9aef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025953"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LYSt3r" metaid="_4eee9502-90f0-4fef-b8f3-ceedca7c6099" name="R_LYSt3r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013540</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4eee9502-90f0-4fef-b8f3-ceedca7c6099"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS3" metaid="ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba" name="R_AACPS3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025952</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebe987f4-b5a1-4b5c-b3a0-ee9e21ca82ba"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025952"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCOAT1r" metaid="_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec" name="3_oxoacid_CoA_transferase__Succinyl_CoA__acetoacetate_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.8.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42a21866-b7d0-4ff6-8ee2-8d37d998c3ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acac_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC3Pabcpp" metaid="_242fc832-4f77-4608-b964-ee1b8debb0a3" name="sn_Glycerol_3_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_242fc832-4f77-4608-b964-ee1b8debb0a3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS120" metaid="_4fc491f7-a221-48ec-9446-38f1687f0093" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4fc491f7-a221-48ec-9446-38f1687f0093"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS2" metaid="_6000cb6e-ade8-45f3-98e9-39dc1d414e56" name="R_AACPS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025951</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6000cb6e-ade8-45f3-98e9-39dc1d414e56"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025951"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1tex" metaid="_93de9196-0857-4430-a373-86039c814f4d" name="R_METSOX1tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_93de9196-0857-4430-a373-86039c814f4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_S_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS121" metaid="_7dc727be-3606-40dd-9c9a-7ba4444a936c" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7dc727be-3606-40dd-9c9a-7ba4444a936c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AACPS1" metaid="_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a" name="R_AACPS1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d4ae961-5fcc-416e-8f9f-dbc6ca85a10a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNRx2" metaid="d4736fee-2215-4fbb-a33e-71063cbc9056" name="FMN_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4736fee-2215-4fbb-a33e-71063cbc9056"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmnh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_LesA_e" metaid="_97bd024a-a074-4c59-b585-7cd099d362f0" name="R_DM_LesA_e" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97bd024a-a074-4c59-b585-7cd099d362f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL80t2pp" metaid="_901fc987-d81e-4e25-a9b6-683c318ff94d" name="fatty_acid_CoA_ligase__octanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_901fc987-d81e-4e25-a9b6-683c318ff94d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octa_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181" metaid="_44c752e9-a069-476f-93a5-d633b4fb84d5" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c752e9-a069-476f-93a5-d633b4fb84d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180" metaid="_9bf18a9c-6d98-4bce-852e-d76f7cb4166b" name="phosphatidylglycerol_phosphate_phosphatase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bf18a9c-6d98-4bce-852e-d76f7cb4166b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGAMT" metaid="_6703ddcc-d856-4bb4-81b8-3bee381864bc" name="phosphoglucosamine_mutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003010</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6703ddcc-d856-4bb4-81b8-3bee381864bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FORtppi" metaid="b520ec68-f923-44e9-8ec6-1d9682bc9a43" name="formate_transport_via_diffusion__cytoplasm_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b520ec68-f923-44e9-8ec6-1d9682bc9a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3PEPTabcpp" metaid="af26fc82-0b1d-48f8-9a47-605ace91c3ef" name="tripeptide__LalaDgluMdap__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af26fc82-0b1d-48f8-9a47-605ace91c3ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPDS" metaid="_443aa0fb-d4f8-44c9-8b90-4dd6660bb936" name="succinyl_diaminopimelate_desuccinylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015120</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 3.5.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_443aa0fb-d4f8-44c9-8b90-4dd6660bb936"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2tex" metaid="_91524f00-6fa5-476e-a636-6f8fc06a942d" name="R_Kt2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_91524f00-6fa5-476e-a636-6f8fc06a942d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStexXF" metaid="_3d1726d9-e87d-47e6-a3cc-04bcf384654e" name="R_EPStexXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021490</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d1726d9-e87d-47e6-a3cc-04bcf384654e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE160abcpp" metaid="_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34f9a2fd-7e5b-4a2f-bf94-760e334fbeb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR140tipp" metaid="a83a9158-b98d-4ead-b7b5-a0fde97b8ed5" name="R_12DGR140tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a83a9158-b98d-4ead-b7b5-a0fde97b8ed5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr140_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so3_e" metaid="_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0" name="R_EX_so3_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bb6c9dd-2ae2-4a45-ab92-96297b8b53e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMtex" metaid="_2e56144f-24f5-4667-80e1-80365102e1f7" name="R_THYMtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2e56144f-24f5-4667-80e1-80365102e1f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thym_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS2XF" metaid="_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02" name="R_LPSS2XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001200</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3df2e4a4-fd35-4c2f-871d-5aa2f6284b02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="320"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="2188"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="2188"/> + <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="320"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCOAL2r" metaid="_938a464e-1718-4a3f-b0e1-3d0889fd7471" name="R_ACCOAL2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 6.2.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_938a464e-1718-4a3f-b0e1-3d0889fd7471"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP180abcpp" metaid="_2b89ef9a-099e-401d-bdd2-f1b9270863b4" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b89ef9a-099e-401d-bdd2-f1b9270863b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREHpp" metaid="b82dba7e-27f5-4078-89c5-c8b9dcd5e769" name="alpha_alpha_trehalase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b82dba7e-27f5-4078-89c5-c8b9dcd5e769"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCEAtexi" metaid="_60d4b136-801a-4f2e-8c68-7d58c19960df" name="R_TTDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60d4b136-801a-4f2e-8c68-7d58c19960df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS14" metaid="_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261" name="beta_ketoacyl_ACP_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bdb0e75-55bc-4fe1-bf0d-6888bf0d0261"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2tex" metaid="f7661dec-e864-4895-a1c8-389b04f18a43" name="iron__II__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7661dec-e864-4895-a1c8-389b04f18a43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_AMOB" metaid="dcaacf85-ca34-4e84-9012-59026c2aa5a0" name="Sink_needed_to_allow_S_Adenosyl_4_methylthio_2_oxobutanoate_to_leave_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dcaacf85-ca34-4e84-9012-59026c2aa5a0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALLTNr" metaid="c5916cf1-d154-4738-be1f-27ed22e93f83" name="R_ALLTNr" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> + <p>SUBSYSTEM: Nitrogen_Metabolism</p> + <p>EC_NUMBER: 3.5.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5916cf1-d154-4738-be1f-27ed22e93f83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_alltn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alltt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALKr" metaid="_1b061ea9-269a-4250-b937-b58c2e495156" name="galactokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b061ea9-269a-4250-b937-b58c2e495156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KAS15" metaid="f7e312d1-3191-40ab-8df4-da52647f585d" name="beta_ketoacyl_ACP_synthase__2_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7e312d1-3191-40ab-8df4-da52647f585d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.180"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_actACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTG" metaid="cdcd4102-ac04-4274-9c28-635253283c7b" name="murein_polymerizing_transglycosylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004700 AND XFCFBP8418_008630 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_010420 ) OR ( XFCFBP8418_004700 AND XFCFBP8418_020460 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cdcd4102-ac04-4274-9c28-635253283c7b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004700"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGPT3" metaid="b0f5ce42-1b54-4bf5-850c-120ea691fa8a" name="UDP_N_acetylglucosamine_N_acetylmuramyl__pentapeptide_pyrophosphoryl_undecaprenol_N_acetylglucosamine_transferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011260</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.227</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b0f5ce42-1b54-4bf5-850c-120ea691fa8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.227"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uaagmda_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA181" metaid="ac6bbdd2-a452-49af-a324-bea473b59609" name="Phosphatidylserine_syntase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac6bbdd2-a452-49af-a324-bea473b59609"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS100" metaid="_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7838ce1b-c744-4ef7-b2cc-c53afa1ac0a2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA180" metaid="e090a074-5339-4dc6-999e-1b5d6b1f9c99" name="Phosphatidylserine_syntase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e090a074-5339-4dc6-999e-1b5d6b1f9c99"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAGDP" metaid="_7d0efe00-c44c-4c84-b6fb-e21815fc8e35" name="UDP_N_acetylglucosamine_diphosphorylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023670</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d0efe00-c44c-4c84-b6fb-e21815fc8e35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACCITRH" metaid="beab3f41-ac76-4242-925b-87d9c7fed86a" name="R_ACCITRH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#beab3f41-ac76-4242-925b-87d9c7fed86a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accitr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAt3_1" metaid="c13f60cb-78c9-45d6-8713-98dc58e03a49" name="R_NAt3_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001440</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c13f60cb-78c9-45d6-8713-98dc58e03a49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_chitin_polymer_e" metaid="_433c8e40-7bec-4183-8a78-017746677832" name="R_EX_chitin_polymer_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_433c8e40-7bec-4183-8a78-017746677832"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_chitin_polymer_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIb" metaid="f8f8e4fd-f967-4d82-860a-e95897d7c117" name="2_isopropylmalate_hydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f8e4fd-f967-4d82-860a-e95897d7c117"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3c3hmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IPPMIa" metaid="d0487c14-22ef-4ec4-91f1-7a4b60b01854" name="3_isopropylmalate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021510 AND XFCFBP8418_021520</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.33</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0487c14-22ef-4ec4-91f1-7a4b60b01854"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.33"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021520"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021510"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3c2hmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ippm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEt2rpp" metaid="_57ae459d-f59e-404a-867e-2fb6c241c5fb" name="adenine_transport_via_proton_symport__reversible___periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57ae459d-f59e-404a-867e-2fb6c241c5fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREA" metaid="e53cacbc-1df2-45a8-87e3-888fc0cc1d8b" name="urease" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e53cacbc-1df2-45a8-87e3-888fc0cc1d8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG141abcpp" metaid="a6b6b0c3-0333-4a06-9d42-71915151005e" name="phosphatidylglycerol_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6b6b0c3-0333-4a06-9d42-71915151005e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRPPS" metaid="c1d21756-841a-4c8f-a3ec-050b279a553c" name="phosphoribosylpyrophosphate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012870</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.7.6.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1d21756-841a-4c8f-a3ec-050b279a553c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT120" metaid="_3bfe3995-07a7-478d-afcb-33082a6a791a" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bfe3995-07a7-478d-afcb-33082a6a791a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1ddecg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN181" metaid="b2ea9316-62d4-4d5f-8377-74f4f759ee1a" name="CDP_diacylglycerol_synthetase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2ea9316-62d4-4d5f-8377-74f4f759ee1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_X5PL3E" metaid="a132e0d4-615d-4cb2-80d5-b164796db653" name="R_X5PL3E" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a132e0d4-615d-4cb2-80d5-b164796db653"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ru5p_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HPPK2" metaid="_47036610-be70-43b0-8ff1-24d147c86c79" name="6_hydroxymethyl_dihydropterin_pyrophosphokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026570</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.6.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_47036610-be70-43b0-8ff1-24d147c86c79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.6.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE180abcpp" metaid="ac3dee43-de4a-4448-9370-ecc7926b2fa4" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac3dee43-de4a-4448-9370-ecc7926b2fa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN180" metaid="fff29606-f162-4780-93f3-475b874c2f59" name="CDP_diacylglycerol_synthetase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fff29606-f162-4780-93f3-475b874c2f59"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPtppi" metaid="_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d" name="R_UDCPDPtppi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a4c3dd9-4e12-466f-9bbc-3dbdb36e3b6d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CD2tex" metaid="cee97fe3-a814-4f9d-b69d-6cdb53aabc3f" name="cadmium__Cd_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cee97fe3-a814-4f9d-b69d-6cdb53aabc3f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cd2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cd2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_rib_D_e" metaid="_20e83a14-6cb4-4e1b-9c32-bfa6604418b3" name="R_EX_rib_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20e83a14-6cb4-4e1b-9c32-bfa6604418b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCt" metaid="_5300ba34-0572-43a1-8e4b-7766ce41b435" name="R_GLYCt" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5300ba34-0572-43a1-8e4b-7766ce41b435"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN" metaid="_29ed181c-b67e-4396-8010-a03a6ca9a424" name="R_2THZPSN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29ed181c-b67e-4396-8010-a03a6ca9a424"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPabcpp" metaid="_4f146b55-b8fe-46c2-9a7a-bf18896903c7" name="R_DAPabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f146b55-b8fe-46c2-9a7a-bf18896903c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADEtex" metaid="cbfbcfdf-22e9-4308-ac89-9194911f2982" name="adenine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbfbcfdf-22e9-4308-ac89-9194911f2982"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP2pp" metaid="_9b337c50-c719-42ec-b785-3c2dfe7f7cef" name="murein_D_D_carboxypeptidase__murein5px4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b337c50-c719-42ec-b785-3c2dfe7f7cef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein5px4px4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein4px4px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSDabcpp" metaid="db962fa4-a856-44b9-a7a1-c3b019636173" name="R_CYSDabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db962fa4-a856-44b9-a7a1-c3b019636173"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UACMAMO" metaid="b8359d44-4150-4ea9-ac92-65b3e076b3f6" name="UDP_N_acetyl_D_mannosamine_oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.336</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8359d44-4150-4ea9-ac92-65b3e076b3f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.336"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uacmam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA120" metaid="c1911f53-b995-4962-844e-95575d086deb" name="Phosphatidylserine_syntase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1911f53-b995-4962-844e-95575d086deb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ps120_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHRPL" metaid="_144ecfe1-5e21-461a-b6c7-237648271450" name="Chorismate_pyruvate_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011490</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.3.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_144ecfe1-5e21-461a-b6c7-237648271450"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PItex" metaid="_021e930c-78bd-4508-9b10-628161093fbc" name="glycero_3_phospho_1_inositol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_021e930c-78bd-4508-9b10-628161093fbc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pi_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP181abcpp" metaid="_6910f36a-f866-44ec-963f-fb627be23d8e" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6910f36a-f866-44ec-963f-fb627be23d8e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tex" metaid="_24ace21b-f744-4cb5-8d4e-f117f90be7c5" name="cobalt__Co_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24ace21b-f744-4cb5-8d4e-f117f90be7c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3tex" metaid="_7f0702f7-9a84-4a84-8655-b46f3695f187" name="R_CITt3tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7f0702f7-9a84-4a84-8655-b46f3695f187"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTPCII2" metaid="_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53" name="GTP_cyclohydrolase_II__25drapp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b1ee868-2ca5-41ae-9660-fd42fbfd9a53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCL" metaid="_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7" name="Glycine_Cleavage_System" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003740 AND XFCFBP8418_010560 AND XFCFBP8418_015760 AND XFCFBP8418_015770</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34a00b12-a3b3-4efe-bfd8-ea0b3648edf7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003740"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015770"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015760"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HBZOPT" metaid="_859b4d9e-d4e9-48fa-8e34-605aeb6bd094" name="Hydroxybenzoate_octaprenyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014680</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_859b4d9e-d4e9-48fa-8e34-605aeb6bd094"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4hbz_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ophb_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2Bpp" metaid="_5bc3d4c2-03ca-4d63-997a-b036b8201da4" name="murein_L_D_carboxypeptidase__murein4p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bc3d4c2-03ca-4d63-997a-b036b8201da4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSabcpp" metaid="bc9f4672-0bd3-4db4-a8de-9293b57677df" name="L_cysteine_uptake_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bc9f4672-0bd3-4db4-a8de-9293b57677df"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL4" metaid="_4f226009-7c46-4f5c-bc20-7d6b71729812" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f226009-7c46-4f5c-bc20-7d6b71729812"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pheacnit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_BIOMASS_c" metaid="_4871584b-a1fb-4f05-bb6a-81011942db8a" name="R_DM_BIOMASS_c" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4871584b-a1fb-4f05-bb6a-81011942db8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_BIOMASS_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPDC" metaid="_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d" name="diaminopimelate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023860</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3ae6ce1a-3c5a-4f21-8cfc-bcd76f8eef8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023860"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NITL5" metaid="_1307019b-a1b1-4773-8222-16cff7d40ca3" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.5.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1307019b-a1b1-4773-8222-16cff7d40ca3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_bzonit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3abcpp" metaid="faf82e1a-1d8a-4788-bd9a-b45d27c4d584" name="R_SO3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faf82e1a-1d8a-4788-bd9a-b45d27c4d584"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACM6PH" metaid="_63d3f650-18a4-4ff6-9e83-d579b44b3efb" name="N_acetylmuramate_6_phosphate_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.126</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63d3f650-18a4-4ff6-9e83-d579b44b3efb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.126"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBCGT" metaid="_96b1c983-3e7a-4693-9742-690df645eb69" name="DsbC_glutathione_thiotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003390</p> + <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96b1c983-3e7a-4693-9742-690df645eb69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthox_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNN" metaid="_75340bb8-4f57-4630-b302-0e410854ea1a" name="R_NMNN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.2.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_75340bb8-4f57-4630-b302-0e410854ea1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPD" metaid="_0882e8db-1b85-40e8-8720-84d0c41ebce8" name="3_Oxo_glutaryl__ACP__methyl_ester_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0882e8db-1b85-40e8-8720-84d0c41ebce8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_k_e" metaid="_1c224853-b9bd-4b91-9c12-031dc274cf2b" name="R_EX_k_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c224853-b9bd-4b91-9c12-031dc274cf2b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_k_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG161abcpp" metaid="_4eae385e-cccb-4a2c-bee1-6769794a402c" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4eae385e-cccb-4a2c-bee1-6769794a402c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBKr" metaid="_28e4dd65-346a-4793-8d21-f58e2830dc0c" name="ribokinase_reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008660</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e4dd65-346a-4793-8d21-f58e2830dc0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MICITDr" metaid="_16a96a25-935d-4afd-b4ca-b2b918509ba0" name="2_methylisocitrate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025910</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.99</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16a96a25-935d-4afd-b4ca-b2b918509ba0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.99"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mcacn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_micit_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT140" metaid="_76c327a0-64f3-48af-bac2-21e08135d8f0" name="1_tetradecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76c327a0-64f3-48af-bac2-21e08135d8f0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAMAGS" metaid="_0fe35e46-cae4-4900-aab6-9b60b92b21ee" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023840</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fe35e46-cae4-4900-aab6-9b60b92b21ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uama_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRS" metaid="_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5" name="threonine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020360</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ecfd703-3f9b-405b-ac8f-39bd0e0b73d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKGLUCK" metaid="_606ba1b7-d299-4516-800f-23ce787b4edb" name="2_deoxy_5_keto_D_gluconic_acid_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.92</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_606ba1b7-d299-4516-800f-23ce787b4edb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.92"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT141" metaid="_4d748a4a-7b65-483b-a02a-dc430687525b" name="1_tetradec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4d748a4a-7b65-483b-a02a-dc430687525b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN160" metaid="_690fdbee-8b0f-4df9-94bf-84e7fa117bcb" name="CDP_diacylglycerol_synthetase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_690fdbee-8b0f-4df9-94bf-84e7fa117bcb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN161" metaid="a97705a7-3409-4ac6-88c4-d8201067e87f" name="CDP_diacylglycerol_synthetase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a97705a7-3409-4ac6-88c4-d8201067e87f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMDPHT" metaid="_63c64b55-d57b-433b-b37b-8926231124e5" name="pyrimidine_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_63c64b55-d57b-433b-b37b-8926231124e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aprbu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S2FE2SS2" metaid="_79f20238-a43c-4471-ba5e-19db00879552" name="R_S2FE2SS2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79f20238-a43c-4471-ba5e-19db00879552"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" 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name="murein_L_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cae4d2be-3ee7-4bb6-baa9-097d9e2efd8c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_murein3px4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3tex" metaid="ed627a8a-6b03-4bec-9866-917c9efefb6a" name="R_HCO3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed627a8a-6b03-4bec-9866-917c9efefb6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hco3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hco3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URCN" metaid="e26a7dfb-3e73-45e3-9850-e0feb8da90ae" name="urocanase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e26a7dfb-3e73-45e3-9850-e0feb8da90ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEMEOS" metaid="_05e2bd9b-e836-41a3-b965-318c66d29860" name="Heme_O_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.141</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05e2bd9b-e836-41a3-b965-318c66d29860"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.141"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HCO3abcpp" metaid="fc79df28-db6d-4647-9a25-7e5d039f0e34" name="R_HCO3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007690</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc79df28-db6d-4647-9a25-7e5d039f0e34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACOTA" metaid="_35d3bd35-ff20-4233-ac07-f7524dd63794" name="acetylornithine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.6.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35d3bd35-ff20-4233-ac07-f7524dd63794"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acorn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPS2" metaid="_0910cfff-a0d6-449d-a8a9-69d6689a0900" name="dihydropteroate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014930</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0910cfff-a0d6-449d-a8a9-69d6689a0900"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6hmhptpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL100t2pp" metaid="d1eae919-daa3-4d78-a329-cb01833e7d7d" name="fatty_acid_CoA_ligase__decanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1eae919-daa3-4d78-a329-cb01833e7d7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNtex" metaid="d126276d-34ac-45a1-8be7-c3482f615ad7" name="R_NMNtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d126276d-34ac-45a1-8be7-c3482f615ad7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O2tpp" metaid="_97b68843-fbfc-462b-9b38-b960c6232da5" name="o2_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97b68843-fbfc-462b-9b38-b960c6232da5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR141tipp" metaid="ffc643cc-a0d4-448a-a6ec-b441b82305be" name="R_12DGR141tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffc643cc-a0d4-448a-a6ec-b441b82305be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr141_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SADT2" metaid="_5aa01bac-402d-4015-8fae-d2de0d40a3af" name="Sulfate_adenyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002680 AND XFCFBP8418_002690</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.7.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5aa01bac-402d-4015-8fae-d2de0d40a3af"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002690"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASP1DC" metaid="_3dad8860-fadb-4d45-b78f-ea6623501438" name="aspartate_1_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dad8860-fadb-4d45-b78f-ea6623501438"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_B_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA141" metaid="_96d1e5e8-7505-4e20-bb88-8de38ff45115" name="Phosphatidylserine_syntase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96d1e5e8-7505-4e20-bb88-8de38ff45115"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPS" metaid="_035776d4-ce25-4406-adbc-5d614ecb3297" name="3_Oxo_glutaryl__ACP__methyl_ester_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017940</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_035776d4-ce25-4406-adbc-5d614ecb3297"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSSA140" metaid="b6be7b5c-9ee1-4d01-8f46-585cebd1a3b9" name="Phosphatidylserine_syntase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007390</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6be7b5c-9ee1-4d01-8f46-585cebd1a3b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ps140_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCtex" metaid="_42438596-6d57-4484-8c61-7ae6ea285615" name="glucose_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_42438596-6d57-4484-8c61-7ae6ea285615"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPN" metaid="f1e94955-c06e-4682-afdf-337ba30a04b0" name="R_CMPN" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007150</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.2.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f1e94955-c06e-4682-afdf-337ba30a04b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_csn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OGMEACPR" metaid="ef87a881-74aa-4665-8b74-7390b15be581" name="3_Oxo_glutaryl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef87a881-74aa-4665-8b74-7390b15be581"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ogmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hgmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACODA" metaid="_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9" name="N_acetylornithine_deacetylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025270</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f26c8e9-8f85-4cc5-a178-ac9e0dc1c6f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNATr" metaid="_2adc3af3-4199-4fbf-be6c-96b4c4c930f7" name="nicotinate_nucleotide_adenylyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.7.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2adc3af3-4199-4fbf-be6c-96b4c4c930f7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LGTHL" metaid="fcef5802-3d5d-46f2-a6ba-453e430b6219" name="lactoylglutathione_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003630</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: 4.4.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fcef5802-3d5d-46f2-a6ba-453e430b6219"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lgt_S_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_tre_e" metaid="_2b25f65c-97e2-404d-901a-2f351b852d79" name="R_EX_tre_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b25f65c-97e2-404d-901a-2f351b852d79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP160pp" metaid="a1b419c0-81da-4e40-a057-a1e9407e11f6" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a1b419c0-81da-4e40-a057-a1e9407e11f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYAT" metaid="e9dc1a75-b6d0-406f-afa0-5fbbc5757598" name="glycine_C_acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004000</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e9dc1a75-b6d0-406f-afa0-5fbbc5757598"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPR" metaid="_38311acc-fe0e-4fe8-b291-e50c8b6cd311" name="3_Oxo_pimeloyl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38311acc-fe0e-4fe8-b291-e50c8b6cd311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPS" metaid="de252ec5-5a95-4339-95de-75bd74c748d6" name="3_Oxo_pimeloyl__ACP__methyl_ester_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de252ec5-5a95-4339-95de-75bd74c748d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_opmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNt7pp" metaid="d24df04a-1053-45b4-9d5b-1b2bb443830c" name="R_NMNt7pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.2.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d24df04a-1053-45b4-9d5b-1b2bb443830c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nmn_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ncam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_pe_LesA" metaid="_5357bd7d-8ed9-4a47-9785-f9800b06ae3a" name="R_PROT_pe_LesA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5357bd7d-8ed9-4a47-9785-f9800b06ae3a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_LesA_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THIORDXi" metaid="_0cd67b67-db31-4c16-81ee-fb0e0ac0b203" name="hydrogen_peroxide_reductase__thioredoxin_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_009690 ) OR ( XFCFBP8418_009690 AND XFCFBP8418_013260 ) OR ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0cd67b67-db31-4c16-81ee-fb0e0ac0b203"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtpp" metaid="c6a70f8d-7458-4027-a984-349491373917" name="selenite_transport_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6a70f8d-7458-4027-a984-349491373917"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_slnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN141" metaid="d26ad3a6-bebe-42cd-9237-035ba1b3eed7" name="CDP_diacylglycerol_synthetase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d26ad3a6-bebe-42cd-9237-035ba1b3eed7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGTRS" metaid="_498f98ae-e4c7-42d3-8f54-d49e92362ece" name="Arginyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015410</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_498f98ae-e4c7-42d3-8f54-d49e92362ece"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_argtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gam_e" metaid="_5ff50da0-3067-4ccc-bc06-431e0e095786" name="R_EX_gam_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ff50da0-3067-4ccc-bc06-431e0e095786"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN140" metaid="_28c0f073-5fec-4c04-8491-4d0cd1fc0982" name="CDP_diacylglycerol_synthetase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28c0f073-5fec-4c04-8491-4d0cd1fc0982"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNCOAT" metaid="_172f23b0-3e36-4ec7-a8f7-4877f049e313" name="R_DHNCOAT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000310 ) OR ( XFCFBP8418_016380 ) OR ( XFCFBP8418_027720 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_172f23b0-3e36-4ec7-a8f7-4877f049e313"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000310"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016380"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_14dhncoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCDCAtexi" metaid="_83ec1012-b479-41ea-9b1c-741d6ab0c55b" name="R_OCDCAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83ec1012-b479-41ea-9b1c-741d6ab0c55b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INOSTt2pp" metaid="_60d617c5-eb84-43d2-a135-e69aea81b345" name="myo_Inositol_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_60d617c5-eb84-43d2-a135-e69aea81b345"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_inost_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEtex" metaid="_3d815093-2372-46d7-b732-629120c99cb7" name="R_INDOLEtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d815093-2372-46d7-b732-629120c99cb7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_indole_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CMPA_1" metaid="_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4" name="R_CMPA_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.53</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bf975a4-4ad7-4ad8-9f6b-e7e926c264a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.53"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_Ncbmpts_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTDCAtex" metaid="f68853a7-bb81-4117-8b8a-d5b23354fe12" name="Tetradecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f68853a7-bb81-4117-8b8a-d5b23354fe12"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BPNT" metaid="_0bd2463b-6ba8-4599-8cc9-37d09a118595" name="3__5__bisphosphate_nucleotidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015810</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bd2463b-6ba8-4599-8cc9-37d09a118595"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CBPS" metaid="d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e" name="carbamoyl_phosphate_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023960 AND XFCFBP8418_023970</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 6.3.5.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d26f35f6-2ec3-4773-9be0-0c2ebea9bb7e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023970"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023960"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALCD2y" metaid="b889036a-9533-4a29-bce6-e97aa68065d0" name="alcohol_dehydrogenase__ethanol_nadp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021600</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b889036a-9533-4a29-bce6-e97aa68065d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_etoh_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPMEACPR" metaid="_0f96bf08-f967-48f3-93bf-7dce412104f3" name="Enoylpimeloyl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f96bf08-f967-48f3-93bf-7dce412104f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDabcpp" metaid="a3c26352-4e70-49d6-bdbe-251095bf2931" name="molybdate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004070 AND XFCFBP8418_004080 AND XFCFBP8418_004090 AND XFCFBP8418_004100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3c26352-4e70-49d6-bdbe-251095bf2931"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004080"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mobd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UMPK" metaid="_843f2051-31c6-49f8-9274-c50f7feaa5f5" name="UMP_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004870 ) OR ( XFCFBP8418_024760 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_843f2051-31c6-49f8-9274-c50f7feaa5f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004870"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024760"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_dextrin_e" metaid="_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d" name="R_EX_dextrin_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d547eb7-32fb-4cfb-a882-4ca7f6e35a8d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPtex" metaid="_95c3d2bf-26e3-4528-b8d7-220421fe20b3" name="R_DAPtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_95c3d2bf-26e3-4528-b8d7-220421fe20b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_M_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_M_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPMEACPD" metaid="_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4" name="3_Oxo_pimeloyl__ACP__methyl_ester_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5bb5cc38-4c7b-4c7b-a903-879afa6edeb4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hpmeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_epmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSr" metaid="_52a59611-b4b8-491c-8a81-77a799440f58" name="methionine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020760</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.1.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_52a59611-b4b8-491c-8a81-77a799440f58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_F2NAPPUDC" metaid="_32a86585-5561-443d-b82a-af62daf8dd19" name="R_F2NAPPUDC" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_32a86585-5561-443d-b82a-af62daf8dd19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpacfuc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f2Nappudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MPTSS" metaid="f93c4e56-1970-4ac8-9a61-bdc9fb0932a5" name="molybdopterin_synthase_sulfurylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.80</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f93c4e56-1970-4ac8-9a61-bdc9fb0932a5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.80"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_moadcoo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_moadamp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGabcpp" metaid="_1afcd294-0571-4975-87e2-dc8f443379e6" name="L_arginine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1afcd294-0571-4975-87e2-dc8f443379e6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2tex" metaid="_39f5e57f-2b12-494f-bd68-9ba86f019199" name="R_H2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_39f5e57f-2b12-494f-bd68-9ba86f019199"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_2THZPSN2" metaid="cd8edc97-7777-49ff-8ec2-cdafe1b21523" name="R_2THZPSN2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_010710 AND XFCFBP8418_011380 AND XFCFBP8418_025440</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd8edc97-7777-49ff-8ec2-cdafe1b21523"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025440"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011380"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010710"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2c4mthzep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE3" metaid="_134e14c8-23d7-4975-8993-627cad8b0328" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_134e14c8-23d7-4975-8993-627cad8b0328"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_acybut_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2tex" metaid="e84f88d3-ed67-4fe6-8c89-1d05d753a009" name="R_FUMt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e84f88d3-ed67-4fe6-8c89-1d05d753a009"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE2" metaid="a994ee3a-5c18-4224-b252-d544d7721451" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a994ee3a-5c18-4224-b252-d544d7721451"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aprop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETA" metaid="_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0" name="isoleucine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4faf7029-4b9a-45ef-995a-dd6b6cd7daa0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUN" metaid="_6d5db020-42d2-4c67-b09a-71d599af89fd" name="glutaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026750</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d5db020-42d2-4c67-b09a-71d599af89fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUR" metaid="ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c" name="glutamate_racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecfb0ef4-ec37-41aa-9ffd-d6a6e4f2054c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3abcpp" metaid="d36a7413-0b8c-4b38-abc3-820c39ccf4ae" name="R_FE3abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d36a7413-0b8c-4b38-abc3-820c39ccf4ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DASYN120" metaid="_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792" name="CDP_diacylglycerol_synthetase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024840</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.7.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ba1e8dc-1e0d-4dc0-ad46-1e4fdd620792"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NACtpp" metaid="ae1e97f9-8617-497c-ae71-24585acd3ce5" name="R_NACtpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae1e97f9-8617-497c-ae71-24585acd3ce5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nac_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOCT" metaid="bdab0b04-e8cb-4bab-8f54-163eae6288b3" name="Lipoyl_octanoyl__transferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022350</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdab0b04-e8cb-4bab-8f54-163eae6288b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHF" metaid="d4619ccf-80f9-4cad-96ea-bba4caee5f43" name="R_SHCHF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.99.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d4619ccf-80f9-4cad-96ea-bba4caee5f43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sheme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe3_e" metaid="d2a448eb-c902-4e33-ab88-6e80ede7832f" name="R_EX_fe3_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2a448eb-c902-4e33-ab88-6e80ede7832f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILEabcpp" metaid="_1db2a1a5-3ad1-49be-b2f5-9426939530b0" name="L_isoleucine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1db2a1a5-3ad1-49be-b2f5-9426939530b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADDP" metaid="_3755c964-c650-40a9-a331-572a12deb4d8" name="R_NADDP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012090</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3755c964-c650-40a9-a331-572a12deb4d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDPS" metaid="dcba839d-2519-4cb8-9aab-1b45abfea0b7" name="Undecaprenyl_diphosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024830</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dcba839d-2519-4cb8-9aab-1b45abfea0b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024830"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="8"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="8"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNATr" metaid="_1536dc85-983a-4dc5-a7b2-1693baf7ee7f" name="nicotinamide_nucleotide_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1536dc85-983a-4dc5-a7b2-1693baf7ee7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYALDtpp" metaid="_3d01642d-709a-4a12-9b8e-5c4c7b9143ec" name="R_GLYALDtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d01642d-709a-4a12-9b8e-5c4c7b9143ec"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyald_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CS" metaid="_23d90c22-f4bc-4bde-8c29-ab8d669a9aed" name="citrate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002320</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 2.3.3.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23d90c22-f4bc-4bde-8c29-ab8d669a9aed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.3.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDDMR" metaid="c8ea31f2-689b-402d-8528-16afb300f073" name="R_GDDMR" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006450</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.281</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c8ea31f2-689b-402d-8528-16afb300f073"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.281"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp6dm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp4d6dm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABTA" metaid="_3feec985-0dfd-47db-890f-ffdb7d9c4a21" name="R_ABTA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.6.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3feec985-0dfd-47db-890f-ffdb7d9c4a21"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUM" metaid="_01f69675-9e9e-403f-a07a-1fbb9a7f1344" name="fumarase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_002100 ) OR ( XFCFBP8418_016890 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01f69675-9e9e-403f-a07a-1fbb9a7f1344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002100"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTRS" metaid="_68f26176-267c-4299-8ae1-e8ed7005c387" name="tyrosyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015580</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68f26176-267c-4299-8ae1-e8ed7005c387"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015580"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMABCt" metaid="db998b9d-c4f8-49ab-bc81-335ce9c0c4e3" name="R_ACGAMABCt" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db998b9d-c4f8-49ab-bc81-335ce9c0c4e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHPPDA2" metaid="_397adf45-3110-49b9-ae89-2c10c38bdc95" name="R_DHPPDA2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_397adf45-3110-49b9-ae89-2c10c38bdc95"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_25drapp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5apru_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADNK1" metaid="_70c5194d-2459-4c73-baaa-52095bab44ce" name="R_ADNK1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026070</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.1.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70c5194d-2459-4c73-baaa-52095bab44ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS180pp" metaid="_41e3f736-7f18-4ed2-882d-078fcd073cf4" name="cardiolipin_synthase__periplasmic__n_C18_0_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41e3f736-7f18-4ed2-882d-078fcd073cf4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn180_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP161abcpp" metaid="_6b4db725-0f46-45cd-91a7-ff5e26647473" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b4db725-0f46-45cd-91a7-ff5e26647473"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS180" metaid="_8292c076-d98f-4659-abf8-5aea04f19a2e" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8292c076-d98f-4659-abf8-5aea04f19a2e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4b" metaid="_1fce80bd-1ea0-4dbf-923e-87f0e18742da" name="R_RNDR4b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1fce80bd-1ea0-4dbf-923e-87f0e18742da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS181" metaid="f6607936-32c2-4e46-ad0a-30d824da2f35" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.179</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6607936-32c2-4e46-ad0a-30d824da2f35"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.179"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_inost_e" metaid="_0aedf89d-8a96-4cfa-92a3-6eb5f2053277" name="R_EX_inost_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0aedf89d-8a96-4cfa-92a3-6eb5f2053277"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_inost_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN6PI" metaid="_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c" name="mannose_6_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.3.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7dbe2ce6-db32-4f7e-bc6e-b3f2ddf43e5c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAPT" metaid="_5dde2c9f-2b10-4b58-a131-233066c88570" name="R_DHAPT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.121</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5dde2c9f-2b10-4b58-a131-233066c88570"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.121"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASADH" metaid="_5b379ec5-d580-42e2-b908-5cb20646ef45" name="R_ASADH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003880</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.2.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b379ec5-d580-42e2-b908-5cb20646ef45"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4pasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2tex" metaid="f545ce1c-e54a-4c5b-8a49-c502345c9345" name="R_MALDt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f545ce1c-e54a-4c5b-8a49-c502345c9345"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mal_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALCOAMT" metaid="_4f14dd11-4111-46fe-b081-74f31fa49336" name="Malonyl_CoA_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000200 ) OR ( XFCFBP8418_001720 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.197</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4f14dd11-4111-46fe-b081-74f31fa49336"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.197"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000200"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malcoame_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGtex" metaid="_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8" name="glycerophoglycerol_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c99b45-18a0-45ae-8d1d-c1b1c42b96c8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pg_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPR" metaid="_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e" name="2_dehydropantoate_2_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.169</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a68ad4c-d4cd-4ce0-9f53-966e0013be3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.169"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2dhp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pant_R_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLU5K" metaid="b8b1436a-57d8-458d-b9e0-94f26f27e260" name="glutamate_5_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025230</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.7.2.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b8b1436a-57d8-458d-b9e0-94f26f27e260"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC2r" metaid="_6645cf46-919f-486a-9823-6781d9cfbbb6" name="phosphoribosylaminoimidazole_carboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6645cf46-919f-486a-9823-6781d9cfbbb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hco3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATHRDHr" metaid="_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e" name="R_ATHRDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.381</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7e3a7053-fb8e-4b36-b54f-dd6fdb04058e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.381"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2aobut_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROt2rpp" metaid="_9bd00da5-d6af-4066-9645-33a888f9bbcd" name="L_proline_reversible_transport_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bd00da5-d6af-4066-9645-33a888f9bbcd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GHMT2r" metaid="da8d0d51-de92-452f-a95b-e3db2099f067" name="glycine_hydroxymethyltransferase__reversible" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.1.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#da8d0d51-de92-452f-a95b-e3db2099f067"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUIN2tpp" metaid="d71079b3-0b61-482c-80db-53375e0430ac" name="R_QUIN2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d71079b3-0b61-482c-80db-53375e0430ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_quin_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHSL1r" metaid="f530f847-db22-43d3-9d16-6d7eac17354a" name="R_SHSL1r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.48</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f530f847-db22-43d3-9d16-6d7eac17354a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_suchms_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFK" metaid="_0821679d-8246-41fd-bba1-6ce3a40d8b18" name="riboflavin_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0821679d-8246-41fd-bba1-6ce3a40d8b18"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3b" metaid="_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb" name="R_RNDR3b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43142d0a-9eef-49e5-b7f0-e37c0a16a8eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMPPP" metaid="_0ec55137-23f5-4f3f-9112-d6bd2eafdea0" name="thiamine_phosphate_diphosphorylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ec55137-23f5-4f3f-9112-d6bd2eafdea0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mpetz_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSBAO1" metaid="_5c0b1182-02bb-4720-beb4-03400b842a82" name="DsbA_protein_reoxidation_reaction__aerobic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003290 AND XFCFBP8418_008810 ) OR ( XFCFBP8418_003300 AND XFCFBP8418_008810 )</p> + <p>SUBSYSTEM: Protein_disulfide_bond_transfer</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5c0b1182-02bb-4720-beb4-03400b842a82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003300"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008810"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003290"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbard_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbaox_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_4abut_e" metaid="_0a49bcd6-eff9-41d0-bd80-27d644965d83" name="R_EX_4abut_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a49bcd6-eff9-41d0-bd80-27d644965d83"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FCLT" metaid="_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d" name="Ferrochelatase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006790</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.99.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8eb1d4bb-b1c1-44fb-81f9-ebed8b74488d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.99.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppp9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSK" metaid="_9940ff69-7b6c-4680-8a6c-988340fcd018" name="homoserine_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020370</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9940ff69-7b6c-4680-8a6c-988340fcd018"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_phom_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRAr" metaid="_76b3b033-d489-453c-bb92-fa7bfd1b43ff" name="Threonine_Aldolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76b3b033-d489-453c-bb92-fa7bfd1b43ff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL2r" metaid="dacd9565-cac8-43a7-b468-bae13439ab04" name="adenylosuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dacd9565-cac8-43a7-b468-bae13439ab04"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aicar_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PGabcpp" metaid="_44db3cb0-b678-4dc7-81ca-28d8e338ea64" name="sn_glycerol_3_phosphoglycerol_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44db3cb0-b678-4dc7-81ca-28d8e338ea64"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pg_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3pg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_O16A4COLIPAabctex" metaid="b12703fa-9481-407c-82ac-92105fd00866" name="R_O16A4COLIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12703fa-9481-407c-82ac-92105fd00866"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUtex" metaid="cc285548-4649-4d25-9a09-e6c71c2f1135" name="L_glutamate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc285548-4649-4d25-9a09-e6c71c2f1135"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_cp_LesA" metaid="c7216a2f-75d2-418a-8595-9227e9080418" name="R_PROT_cp_LesA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002410 AND XFCFBP8418_002430 AND XFCFBP8418_002450 AND XFCFBP8418_002490 AND XFCFBP8418_002510 AND XFCFBP8418_007090 AND XFCFBP8418_007140 AND XFCFBP8418_008580 AND XFCFBP8418_009650 AND XFCFBP8418_014460</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c7216a2f-75d2-418a-8595-9227e9080418"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002490"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002430"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009650"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="601"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="601"/> + <speciesReference constant="true" species="M_LesA_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="601"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2b" metaid="_6e54d580-b45a-4013-a358-079027932d74" name="R_RNDR2b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e54d580-b45a-4013-a358-079027932d74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pyr_e" metaid="_8633901e-e762-4406-8ebb-b58c3f6c6f92" name="R_EX_pyr_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8633901e-e762-4406-8ebb-b58c3f6c6f92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS160" metaid="a3fabda9-649f-4736-b7fa-28241c5853c0" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a3fabda9-649f-4736-b7fa-28241c5853c0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DSERDHr" metaid="_59ad4187-4ef2-4171-90b9-234bbc54fcee" name="R_DSERDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.276</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59ad4187-4ef2-4171-90b9-234bbc54fcee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS161" metaid="d9fd717c-9da8-4cd7-b257-1e48b23ee048" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9fd717c-9da8-4cd7-b257-1e48b23ee048"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRATPP" metaid="_7bab06b3-5f10-46bc-8921-b52ca4efaa68" name="phosphoribosyl_ATP_pyrophosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020260</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.6.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bab06b3-5f10-46bc-8921-b52ca4efaa68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbamp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_URAt2pp" metaid="c689780f-6291-4a49-8606-befea4ef9449" name="R_URAt2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c689780f-6291-4a49-8606-befea4ef9449"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ura_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GP4GH" metaid="_537a438f-16d9-4cc6-9519-85c84364ff69" name="Gp4G_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_537a438f-16d9-4cc6-9519-85c84364ff69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gp4g_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPK2r" metaid="_0bae4037-a747-4a55-97f0-2d9c35812403" name="polyphosphate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 2.7.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0bae4037-a747-4a55-97f0-2d9c35812403"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAPE" metaid="_29a03fd9-aefc-4f79-b029-e69b46c520e5" name="diaminopimelate_epimerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002870</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 5.1.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29a03fd9-aefc-4f79-b029-e69b46c520e5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_26dap_LL_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAtex" metaid="b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f" name="R_OAAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b07ccf1c-e5f0-4e1a-aec2-8e9ad696935f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORPT" metaid="f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd" name="orotate_phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015470</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9ef6e07-c2be-48b1-a3a1-3bf83ffd1efd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROtex" metaid="_9d708f07-47a2-4900-8f78-559008fb3911" name="L_proline_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d708f07-47a2-4900-8f78-559008fb3911"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE120abcpp" metaid="_3a7b34bd-9273-4389-9723-727fa652ce82" name="phosphatidylethanolamine_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a7b34bd-9273-4389-9723-727fa652ce82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP180pp" metaid="c35596c4-e315-4b33-a091-de5a0f92068b" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c35596c4-e315-4b33-a091-de5a0f92068b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg180_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mobd_e" metaid="_20930448-937b-4cf1-ab3f-ecc08d62f091" name="R_EX_mobd_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20930448-937b-4cf1-ab3f-ecc08d62f091"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1b" metaid="b9cad4e8-4536-4eec-8c2e-6d989419fe0e" name="R_RNDR1b" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013020 AND XFCFBP8418_023110 AND XFCFBP8418_023120</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b9cad4e8-4536-4eec-8c2e-6d989419fe0e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPPDC1" metaid="bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2" name="uroporphyrinogen_decarboxylase__uroporphyrinogen_III_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.37</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbf72941-8f9c-476d-88dc-ce5e8f3cc3f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.37"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rpp" metaid="_67a005e1-64b1-49b1-a087-618c55348f69" name="pyruvate_reversible_transport_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a005e1-64b1-49b1-a087-618c55348f69"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_T2DECAI" metaid="_5f6dd7c4-e043-4833-ae2f-ccd001b942a8" name="trans_2_decenoyl_ACP_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006750</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f6dd7c4-e043-4833-ae2f-ccd001b942a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cdec3eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADSL1r" metaid="c79adf30-efb3-4c5b-ab16-e56fe3a29df1" name="adenylsuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002120</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 4.3.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c79adf30-efb3-4c5b-ab16-e56fe3a29df1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002120"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcamp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHNPA2" metaid="_9e213471-7d57-43b4-ad83-a49b7090064d" name="dihydroneopterin_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007450</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.2.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e213471-7d57-43b4-ad83-a49b7090064d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007450"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6hmhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gcald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMMBLHX" metaid="b915eb59-4fc6-4502-ab13-9ac3eb413803" name="2_Octaprenyl_3_methyl_6_methoxy_1_4_benzoquinol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010940</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b915eb59-4fc6-4502-ab13-9ac3eb413803"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010940"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ommbl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2omhmbl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSADS" metaid="_9d0218c9-f286-40a8-b0ed-f09b4a88786a" name="R_CYSSADS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d0218c9-f286-40a8-b0ed-f09b4a88786a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3sala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtex" metaid="f8f0a2d0-bbae-4aa8-9861-728f3528ccc0" name="Methanol_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f0a2d0-bbae-4aa8-9861-728f3528ccc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tpp" metaid="_468c5216-dda7-4ea0-a1be-6d9beafa5192" name="magnesium___2__transport_in_via_diffusion" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_468c5216-dda7-4ea0-a1be-6d9beafa5192"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE140abcpp" metaid="_1c8a405f-6f2b-4349-89a5-74b3a30b1631" name="phosphatidylethanolamine_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c8a405f-6f2b-4349-89a5-74b3a30b1631"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTRS" metaid="cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32" name="Histidyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020350</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf58a71b-ee9b-4e1d-b6bf-7b0e5b537f32"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnahis_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_histrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGDCpp" metaid="e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e" name="R_ARGDCpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015380</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.1.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5dcc1c1-e648-428d-86dd-7d5bb7df0e6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_agm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS140" metaid="f9183968-aad1-4479-871e-85f5ddcce669" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9183968-aad1-4479-871e-85f5ddcce669"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OPHHX" metaid="_3f44626a-4910-45ac-86fa-da92802e5d01" name="2_Octaprenylphenol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017800</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f44626a-4910-45ac-86fa-da92802e5d01"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2oph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS141" metaid="_0ec69bdf-88ce-465f-9218-2538ee9ad8d1" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ec69bdf-88ce-465f-9218-2538ee9ad8d1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR180x" metaid="_3bfc5d63-2c65-4b18-acba-50fc84cb20b6" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3bfc5d63-2c65-4b18-acba-50fc84cb20b6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOCT2" metaid="_3d706d9f-080e-4204-ae23-70f909a44e8b" name="3_deoxy_manno_octulosonate_cytidylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d706d9f-080e-4204-ae23-70f909a44e8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ckdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR2" metaid="_79aeb888-3830-43ed-9cc4-cc33e236b38e" name="ribonucleoside_diphosphate_reductase__GDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79aeb888-3830-43ed-9cc4-cc33e236b38e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR1" metaid="b3219740-d050-4774-a42b-f624af5ded79" name="ribonucleoside_diphosphate_reductase__ADP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3219740-d050-4774-a42b-f624af5ded79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMETTRS" metaid="a2feb2dc-03c1-4e58-b8cc-f958156cc5ef" name="Methionyl_tRNA_formyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009950</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 2.1.2.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2feb2dc-03c1-4e58-b8cc-f958156cc5ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmettrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPODM" metaid="_044de510-3507-4d74-8e62-1e1e87019bd4" name="superoxide_dismutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012590</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.15.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_044de510-3507-4d74-8e62-1e1e87019bd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.15.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2s_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD11" metaid="_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe" name="5__nucleotidase__IMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e7c9853-0f50-49ff-8fbb-bb6eb66501fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ins_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD10" metaid="e4bb43b8-b699-46df-9320-8e53cae7b56f" name="5__nucleotidase__XMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4bb43b8-b699-46df-9320-8e53cae7b56f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xtsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR4" metaid="_896b0e63-5634-4dcf-9958-674ac77696c7" name="ribonucleoside_diphosphate_reductase__UDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_896b0e63-5634-4dcf-9958-674ac77696c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RNDR3" metaid="cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e" name="ribonucleoside_diphosphate_reductase__CDP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_023110 AND XFCFBP8418_023120 ) OR ( XFCFBP8418_013260 AND XFCFBP8418_023110 AND XFCFBP8418_023120 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.17.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd2264e5-2cbb-4db6-ad9d-c07c43bcd14e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023110"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD12" metaid="_5d330281-1b50-41c2-bc1c-73ce1a42e5e7" name="5__nucleotidase__dIMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5d330281-1b50-41c2-bc1c-73ce1a42e5e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dimp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_din_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAAGDS" metaid="_03a62112-53cb-40a6-a5e6-9c48a58b81f1" name="UDP_N_acetylmuramoyl_L_alanyl_D_glutamyl_meso_2_6_diaminopimelate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011300</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_03a62112-53cb-40a6-a5e6-9c48a58b81f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uamag_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_26dap_M_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP3pp" metaid="_48f0e7d9-7db2-4279-8c7e-bf92bf1db331" name="murein_D_D_endopeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_48f0e7d9-7db2-4279-8c7e-bf92bf1db331"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tex" metaid="_248b94d3-106d-4470-8cca-3f6f228bbc8a" name="ammonia_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_248b94d3-106d-4470-8cca-3f6f228bbc8a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD121" metaid="_1d7ccf88-33dd-446c-bcea-f99ba152f541" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1d7ccf88-33dd-446c-bcea-f99ba152f541"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD120" metaid="_22084632-d9f6-40cb-b58f-2e5f42d8c8ad" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_22084632-d9f6-40cb-b58f-2e5f42d8c8ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COBALT2tpp" metaid="_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94" name="cobalt_transport_in_via_permease__no_H__" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010210</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_71a1ba76-5e3a-4113-a1dc-f3d98c0bbe94"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cobalt2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cobalt2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OROTt2_2pp" metaid="_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74" name="Orotate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b8a138c-ca3d-4dcd-b4a2-4e283339ac74"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MN2t3pp" metaid="_31e36b04-fa1f-40e4-9738-d89a6765dd6b" name="manganese__Mn_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_31e36b04-fa1f-40e4-9738-d89a6765dd6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADK" metaid="cd65e5b8-65f7-46b4-8e78-3659cbd30a6a" name="NAD_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_027970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.9.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd65e5b8-65f7-46b4-8e78-3659cbd30a6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.9.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDtex" metaid="_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e" name="R_METDtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4238a353-d6cb-4a6c-a9ac-5f3e78809b5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_met_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_D2" metaid="_0a5e00e9-af40-4141-80c6-64e6817c3fbf" name="D_alanine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a5e00e9-af40-4141-80c6-64e6817c3fbf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPSsynthXF" metaid="_79e373ae-ac1a-4360-8bcb-89a7d0543645" name="R_EPSsynthXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021400 AND XFCFBP8418_021410 AND XFCFBP8418_021440 AND XFCFBP8418_021450 AND XFCFBP8418_021460</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79e373ae-ac1a-4360-8bcb-89a7d0543645"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021410"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021440"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ORNTA" metaid="d5102a3c-3a3c-434a-94d0-8b96be75b928" name="ornithine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.6.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5102a3c-3a3c-434a-94d0-8b96be75b928"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu5sa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMANM" metaid="e7613bec-6717-43e5-9a04-e731c28b552d" name="phosphomannomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026200</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e7613bec-6717-43e5-9a04-e731c28b552d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SDPTA" metaid="c1b371a7-cf60-4264-b23e-ed786ad87c66" name="succinyldiaminopimelate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003360</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c1b371a7-cf60-4264-b23e-ed786ad87c66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl26da_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sl2a6o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANptspp" metaid="f6e61095-8bae-4dd9-977a-512e79a6565e" name="R_MANptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6e61095-8bae-4dd9-977a-512e79a6565e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_man6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAt2tex" metaid="_96deabb3-b15e-44dc-9b44-fe6777fd975d" name="R_ALAt2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96deabb3-b15e-44dc-9b44-fe6777fd975d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR181x" metaid="_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bccbcf3-e7bf-473f-ae20-36fee6e62c8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTS" metaid="_61b6ac42-738f-4dbc-a0de-595026000983" name="R_CYSTS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006490</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 4.2.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61b6ac42-738f-4dbc-a0de-595026000983"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PCPpp" metaid="_2b90323d-3699-41a8-8135-de16322f7fe3" name="R_AGM4PCPpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 3.4.17.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b90323d-3699-41a8-8135-de16322f7fe3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP141abcpp" metaid="e4cac7b1-addf-4094-86dd-5626f799b1e7" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4cac7b1-addf-4094-86dd-5626f799b1e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCOATA" metaid="_34b4986a-38cf-4f0e-b0ff-ac946164acd4" name="Malonyl_CoA_ACP_transacylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_005920</p> + <p>SUBSYSTEM: Membrane_Lipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.39</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b4986a-38cf-4f0e-b0ff-ac946164acd4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.39"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005920"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_malcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRMICI" metaid="_4a139dd6-6b1f-42a3-80fa-c1a652f92f40" name="1__5_phosphoribosyl__5___5_phosphoribosylamino_methylideneamino_imidazole_4_carboxamide_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020280</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 5.3.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a139dd6-6b1f-42a3-80fa-c1a652f92f40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prfp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_prlp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRFGS" metaid="ae9884a2-12e6-45c1-a0b3-eb9c374952fe" name="phosphoribosylformylglycinamidine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003400</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.5.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae9884a2-12e6-45c1-a0b3-eb9c374952fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fpram_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UBQBM" metaid="f9dec702-3dc6-451a-aba0-3f7b5574765e" name="ubiquinone_biosynthesis_monooxygenase_Coq7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002280</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.14.13.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f9dec702-3dc6-451a-aba0-3f7b5574765e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.14.13.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2hpmhobq_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2hp6mobq_me_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQD" metaid="_79202ee9-17eb-4a25-8b3d-0aba67bfb05b" name="3_dehydroquinate_dehydratase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014540</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_79202ee9-17eb-4a25-8b3d-0aba67bfb05b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDC" metaid="_714296ef-25a8-4a7e-8a7d-9b785ef36d1b" name="R_UDPGDC" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006440</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.305</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_714296ef-25a8-4a7e-8a7d-9b785ef36d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.305"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006440"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpLa4o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAR" metaid="f41507bb-f146-4e38-a834-64dc68ceed40" name="alanine_racemase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010700</p> + <p>SUBSYSTEM: Alanine_and_Aspartate_Metabolism</p> + <p>EC_NUMBER: 5.1.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f41507bb-f146-4e38-a834-64dc68ceed40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.1.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPPtppi" metaid="_43042d06-07b1-4ee3-9e5a-e3da8c996d33" name="undecaprenyl_phosphate_transport__cytoplasm_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_43042d06-07b1-4ee3-9e5a-e3da8c996d33"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP2" metaid="_00f0b404-4433-4991-b1ea-6ba5460196bd" name="R_NTPP2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00f0b404-4433-4991-b1ea-6ba5460196bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP1" metaid="_6404b198-63b5-426c-a670-f1f20da40309" name="R_NTPP1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_015800 ) OR ( XFCFBP8418_023820 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6404b198-63b5-426c-a670-f1f20da40309"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNDA2" metaid="_1f4c0b90-0cb9-448e-ba07-43b65152c5a9" name="R_CHTNDA2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021670</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.5.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1f4c0b90-0cb9-448e-ba07-43b65152c5a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_chitos_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPTRS" metaid="cece8e95-5d53-4e5d-b26e-419e911c3979" name="Aspartyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016880</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cece8e95-5d53-4e5d-b26e-419e911c3979"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glc_D_e" metaid="d8bc6d91-13e2-422c-ad0b-731ac272e030" name="R_EX_glc_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8bc6d91-13e2-422c-ad0b-731ac272e030"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRAI" metaid="_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55" name="phosphoribosylanthranilate_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> + <p>SUBSYSTEM: Tyrosine__tryptophan__and_phenylalanine_metabolism</p> + <p>EC_NUMBER: 5.3.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b7be11a-f50b-43a9-88c3-8f0bf41f3c55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3abcpp" metaid="_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8" name="methanesulfonate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_677c2f8c-7961-4be8-b1d7-5a0b60fb21a8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mso3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHQS" metaid="c8451369-a3cb-451c-a1ab-747dc7433c89" name="3_dehydroquinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004170</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c8451369-a3cb-451c-a1ab-747dc7433c89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE140" metaid="cfb3384a-9b94-4fd2-ba77-9cd1ab312909" name="R_FACOAE140" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cfb3384a-9b94-4fd2-ba77-9cd1ab312909"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdca_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_5DGLCNR" metaid="_8e3baeca-0b92-41fd-98d5-bf72e1a03b07" name="5_dehydro_D_gluconate_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.69</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e3baeca-0b92-41fd-98d5-bf72e1a03b07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.69"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5dglcn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glcn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE141" metaid="_9af9b25b-0657-4114-b578-efca4a85f6a7" name="R_FACOAE141" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9af9b25b-0657-4114-b578-efca4a85f6a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdecoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ttdcea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NAMNPP" metaid="_829a24cf-0b33-4fb2-af68-514ec3e938ae" name="R_NAMNPP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024030</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_829a24cf-0b33-4fb2-af68-514ec3e938ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GDPTPDP" metaid="_01138718-ee8e-47e9-b1f4-f8562732613d" name="guanosine_3_diphosphate_5_triphosphate_3_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01138718-ee8e-47e9-b1f4-f8562732613d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdptp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD100" metaid="d9b5e3b1-62f4-42c4-867c-c89d6e183f6b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d9b5e3b1-62f4-42c4-867c-c89d6e183f6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabcpp" metaid="_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36" name="core_oligosaccharide_lipid_A_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4af05ec1-1bed-4aba-a2cb-d0dbf9ec9c36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL161t2pp" metaid="a06a1dff-b332-4665-882d-c20f8bafdd8f" name="fatty_acid_CoA_ligase__hexadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a06a1dff-b332-4665-882d-c20f8bafdd8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBtex" metaid="_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5" name="R_RIBtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4ddf94c1-6b92-40b8-aa6a-bdd0d4400dc5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_rib_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gln_L_e" metaid="_597c5adc-db49-44d2-94f1-b67ad04a0da4" name="R_EX_gln_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_597c5adc-db49-44d2-94f1-b67ad04a0da4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OTOTt2_2tex" metaid="a210e18a-5994-4374-94bd-72287fee0ca0" name="R_OTOTt2_2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a210e18a-5994-4374-94bd-72287fee0ca0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_orot_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orot_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_ADE" metaid="b3e3b004-8105-4516-a6e1-7f94dcafe766" name="R_DM_ADE" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b3e3b004-8105-4516-a6e1-7f94dcafe766"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ade_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPDC" metaid="d93dc4e1-edfc-4c32-85ab-7653f4ed523a" name="orotidine_5__phosphate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014470</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + 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fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CCGS" metaid="aeefd093-9780-4f3a-a4bc-c4b1b159b5ce" name="7_cyano_7_carbaguanine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016870</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aeefd093-9780-4f3a-a4bc-c4b1b159b5ce"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_preq0_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TSULtex" metaid="ec927e32-cf1d-4c73-918a-72f5029322db" name="thiosulfate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ec927e32-cf1d-4c73-918a-72f5029322db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tsul_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DATPHs" metaid="_2b1cac90-06fb-4bc4-b049-4dd1f620efa8" name="R_DATPHs" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b1cac90-06fb-4bc4-b049-4dd1f620efa8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ditp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCt2pp" metaid="e78db6cd-0657-4fea-8f01-81c6ec2b22c9" name="putrescine_transport_in_via_proton_symport" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_020210 ) OR ( XFCFBP8418_020220 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e78db6cd-0657-4fea-8f01-81c6ec2b22c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020220"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMAMUT" metaid="e95f5e68-9ab6-4458-a480-f20dfe2db6e7" name="R_ACMAMUT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021400</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.4.1.180</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e95f5e68-9ab6-4458-a480-f20dfe2db6e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.180"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacmamu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_unagamu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EGMEACPR" metaid="_67a233e0-d4ee-4dc9-942d-b1e17c4c40db" name="Enoylglutaryl__ACP__methyl_ester_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a233e0-d4ee-4dc9-942d-b1e17c4c40db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_egmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR2" metaid="_96cc1688-4359-4703-84b6-1435cb691796" name="L_methionine_R_sulfoxide_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010720 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96cc1688-4359-4703-84b6-1435cb691796"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOXR1" metaid="_5df23b30-a3f6-4676-921e-54191df808b1" name="L_methionine_S_oxide_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000660 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5df23b30-a3f6-4676-921e-54191df808b1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000660"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EPStppXF" metaid="_5fb48694-ac9e-4ed6-b99d-173ee6449183" name="R_EPStppXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021420 AND XFCFBP8418_021460 AND XFCFBP8418_021480</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fb48694-ac9e-4ed6-b99d-173ee6449183"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021480"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021460"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_EPS_XF_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPS" metaid="fafc6c96-1fa9-43ae-9ec8-ef503665762a" name="3_deoxy__D_manno_octulosonic__acid_8_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022230</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.55</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fafc6c96-1fa9-43ae-9ec8-ef503665762a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.55"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022230"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY3pp" metaid="_8c2d34c8-0575-45ca-9afa-b2bb6aa92508" name="murein_lytic_transglycosylase__murein3p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8c2d34c8-0575-45ca-9afa-b2bb6aa92508"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein3p3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cit_e" metaid="_4102b033-7400-4144-a90c-dd4e3e8e846d" name="R_EX_cit_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4102b033-7400-4144-a90c-dd4e3e8e846d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_KDOPP" metaid="_3232385a-d5de-435f-91cd-5bc3226f132f" name="3_deoxy_manno_octulosonate_8_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003480</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3232385a-d5de-435f-91cd-5bc3226f132f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo8p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INS2D" metaid="_23902905-3c66-4f67-8f44-a07f6f2b556d" name="inositol_2_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.1.1.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23902905-3c66-4f67-8f44-a07f6f2b556d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_inost_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR160x" metaid="fb6781bf-f459-4e4d-9c02-b1ab55166450" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb6781bf-f459-4e4d-9c02-b1ab55166450"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUMt2_2pp" metaid="_9bfdf378-c0f2-4e54-baac-18954903679e" name="Fumarate_transport_via_proton_symport__2_H___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bfdf378-c0f2-4e54-baac-18954903679e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fum_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTRLASE" metaid="_100a3131-464c-4fe3-8fbc-96b217be9163" name="nitrilase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004900</p> + <p>SUBSYSTEM: Nitrile_degradation</p> + <p>EC_NUMBER: 3.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_100a3131-464c-4fe3-8fbc-96b217be9163"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_ind3acnl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ind3ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztpp" metaid="_285c7944-ea46-46e8-a16c-61123969b4dc" name="R_Bztpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_285c7944-ea46-46e8-a16c-61123969b4dc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAS60" metaid="_34b80282-f769-4dfd-ba18-8049c74ec799" name="3_oxoacyl__acyl_carrier_protein__synthase__n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005890</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b80282-f769-4dfd-ba18-8049c74ec799"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_malACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ohexACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE160" metaid="_72efae78-afaa-4b0f-9a5f-547547ffbf40" name="R_FACOAE160" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72efae78-afaa-4b0f-9a5f-547547ffbf40"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPM" metaid="_4185d916-7cbb-46e0-adea-86c5eacb2919" name="R_ATPM" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Biomass_and_maintenance_functions</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4185d916-7cbb-46e0-adea-86c5eacb2919"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METabcpp" metaid="_00d49cea-7b15-48c0-bf8b-d807fb1545ac" name="L_methionine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00d49cea-7b15-48c0-bf8b-d807fb1545ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tpp" metaid="_8a8e45aa-9098-4c26-a506-006e63380941" name="R_CA2tpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8a8e45aa-9098-4c26-a506-006e63380941"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE161" metaid="_366b4b50-2bdd-4dbf-95b4-4182b08ec755" name="R_FACOAE161" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_366b4b50-2bdd-4dbf-95b4-4182b08ec755"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdcoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdcea_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ME2" metaid="e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3" name="malic_enzyme__NADP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025470</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 1.1.1.40</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e38276c1-2ba0-4f9f-a4c3-3f01ca1a8cc3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.40"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERabcpp" metaid="_9dd1c7b0-5fe9-488f-895a-52c4f7706186" name="R_SERabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9dd1c7b0-5fe9-488f-895a-52c4f7706186"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD2" metaid="b47e0de9-8e54-4c25-9acb-8fa599657aa4" name="Dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylpentanoate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b47e0de9-8e54-4c25-9acb-8fa599657aa4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_23dhmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3S" metaid="_0b5f9b39-03a1-424b-a3d8-378a01607d24" name="uroporphyrinogen_III_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.75</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b5f9b39-03a1-424b-a3d8-378a01607d24"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.75"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLVR" metaid="_323efc0c-f6dc-4c47-9449-08a6f6e35350" name="R_FLVR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_323efc0c-f6dc-4c47-9449-08a6f6e35350"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rbflvrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHAD1" metaid="_77cebed7-605b-47bd-a764-4b13caba5e3c" name="dihydroxy_acid_dehydratase__2_3_dihydroxy_3_methylbutanoate_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014980</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77cebed7-605b-47bd-a764-4b13caba5e3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_23dhmb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADS2" metaid="_99c270f2-750c-4259-b953-d14e2c9425e3" name="NAD_synthase__glutamine_hydrolysing_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99c270f2-750c-4259-b953-d14e2c9425e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dnad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPS" metaid="_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe" name="R_SPS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010390</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.4.1.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_51b0db8a-aa4b-4a35-a77b-266a4ff17bfe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.1.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_suc6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SEAHCYSHYD" metaid="_1c78443e-bf0c-4b1f-a8cb-2c48272a0288" name="Se_Adenosylselenohomocysteine_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1c78443e-bf0c-4b1f-a8cb-2c48272a0288"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seahcys_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_selhcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_U23GAATXF" metaid="_5ed5820f-384c-4032-a184-2e2bb929b8b9" name="R_U23GAATXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024880</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.191</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ed5820f-384c-4032-a184-2e2bb929b8b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.191"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_u3hga_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_u23ga_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH" metaid="e8b66e0a-dc88-46b6-b724-c95e46904c14" name="malate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023000</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.37</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e8b66e0a-dc88-46b6-b724-c95e46904c14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.37"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023000"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSKXF" metaid="e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02" name="R_TDSKXF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024520</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.130</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e05c0ff9-f3ee-44e4-ae6c-5a8af1fcdd02"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.130"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024520"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lipidAds_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipidA_XF_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DPCOAK" metaid="_72098093-e1d9-4f34-a7c1-7fa433fa2788" name="dephospho_CoA_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011870</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.24</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72098093-e1d9-4f34-a7c1-7fa433fa2788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.24"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011870"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dpcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLTN2pp" metaid="_3a2cf021-2280-4af5-845b-33197249f1e9" name="gluconolactonase__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022170</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a2cf021-2280-4af5-845b-33197249f1e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g15l_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glcn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRabcpp" metaid="d6621e0d-c54a-4e88-9392-506216b82986" name="R_THRabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6621e0d-c54a-4e88-9392-506216b82986"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Pabcpp" metaid="d2c55c67-7451-45ff-b341-7488e1a4909a" name="sn_Glycerol_2_phosphate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2c55c67-7451-45ff-b341-7488e1a4909a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSSr2" metaid="_36a33785-355e-44d9-b292-1c881970cfcb" name="R_CYSSr2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_36a33785-355e-44d9-b292-1c881970cfcb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPA2" metaid="_7faf16e3-0feb-400d-8cdd-1c9c8f111457" name="inorganic_triphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_010630 ) OR ( XFCFBP8418_012360 )</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 3.6.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7faf16e3-0feb-400d-8cdd-1c9c8f111457"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pppi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_COLIPAabctex" metaid="_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9" name="R_COLIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_02c0cfcc-783a-4ca4-8d3e-31820d1f8dd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_core_kdo2lip6_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMATT" metaid="_2aa97013-926a-4b5f-9998-5ed411e27b82" name="dimethylallyltranstransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005980</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2aa97013-926a-4b5f-9998-5ed411e27b82"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_3pp" metaid="c4005074-397f-4200-9656-c1c1ff3a45de" name="R_ASPt2_3pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c4005074-397f-4200-9656-c1c1ff3a45de"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTRS" metaid="c903eca2-cd93-4a27-b834-d0044c22820c" name="Cysteinyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025320</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c903eca2-cd93-4a27-b834-d0044c22820c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnacys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPGPPDP" metaid="_5e5254d2-8d42-429d-94f9-fac11e594eef" name="guanosine_3__5__bis_diphosphate__3__diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e5254d2-8d42-429d-94f9-fac11e594eef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppgpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR161x" metaid="_3766821c-aafe-44f0-bfee-3a2b6449de7f" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3766821c-aafe-44f0-bfee-3a2b6449de7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pi_e" metaid="_572cf404-6cb2-432d-9834-ea31cca085e0" name="R_EX_pi_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_572cf404-6cb2-432d-9834-ea31cca085e0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RFAMPtpp" metaid="d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3" name="Rifampin_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8ed4b2f-81a6-4b6c-bb5e-dbdf61b056f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_rfamp_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rfamp_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK180" metaid="_68cf3dab-f648-4345-ad8b-80f10c25045f" name="diacylglycerol_kinase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68cf3dab-f648-4345-ad8b-80f10c25045f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt10" metaid="c5c7be53-9be9-4db8-bea3-ef614b2faa48" name="R_CITt10" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> + <p>SUBSYSTEM: Transport</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c5c7be53-9be9-4db8-bea3-ef614b2faa48"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK181" metaid="_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e" name="diacylglycerol_kinase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29e19ab5-e127-4ed0-a7bc-0a8d226d4b3e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAPRT" metaid="_8757a5bb-8bc0-4c66-8411-7747b3c46cad" name="guanine_phosphoribosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8757a5bb-8bc0-4c66-8411-7747b3c46cad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gua_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDA" metaid="_55f550d4-f869-44f9-a823-a6eb46a855aa" name="R_G6PDA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_55f550d4-f869-44f9-a823-a6eb46a855aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tpp" metaid="_592d5d7c-c23c-49c8-af79-69a9a21a2fda" name="CO2_transporter_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_592d5d7c-c23c-49c8-af79-69a9a21a2fda"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPC" metaid="_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62" name="IMP_cyclohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001030</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 3.5.4.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7d0bf977-e0f9-4ab5-af73-71af1b9a3d62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fprica_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IMPD" metaid="_72dca34a-c389-4260-9c38-045ec53ce65b" name="IMP_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004780</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.205</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72dca34a-c389-4260-9c38-045ec53ce65b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.205"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR120tipp" metaid="_2f365b72-eab7-4293-8e61-d3977b9fa9bb" name="R_12DGR120tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f365b72-eab7-4293-8e61-d3977b9fa9bb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr120_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MCTP1App" metaid="_1a4b0402-ae16-41d7-98d1-c957b449ea7f" name="murein_crosslinking_transpeptidase_1A__A2pm__D_ala___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004370 ) OR ( XFCFBP8418_008630 ) OR ( XFCFBP8418_010420 ) OR ( XFCFBP8418_011310 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a4b0402-ae16-41d7-98d1-c957b449ea7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004370"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011310"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP5" metaid="b143a1d1-0d57-43a7-85d4-71709412e774" name="R_NTP5" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b143a1d1-0d57-43a7-85d4-71709412e774"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPRy" metaid="_77a79940-cd78-46f6-ab2d-c08956d165d6" name="dihydrodipicolinate_reductase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023980</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.17.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77a79940-cd78-46f6-ab2d-c08956d165d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023980"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCD1" metaid="_9a77c6f3-76f5-4645-8c68-52b4ee104b38" name="succinate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.3.99.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a77c6f3-76f5-4645-8c68-52b4ee104b38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTP" metaid="b1733f22-e0c4-4eb7-96f9-649bb21770c6" name="histidinol_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.1.3.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b1733f22-e0c4-4eb7-96f9-649bb21770c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hisp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NMNDA" metaid="_61a7656c-7c46-4733-b4bd-1793d3d8fb5c" name="R_NMNDA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014880</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.5.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_61a7656c-7c46-4733-b4bd-1793d3d8fb5c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014880"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTP1" metaid="d3528cbd-6c40-449d-bba4-dd0cd8970553" name="R_NTP1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006890</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d3528cbd-6c40-449d-bba4-dd0cd8970553"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE180" metaid="ada0daac-03d6-4b7a-9282-497bb1c97f15" name="R_FACOAE180" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ada0daac-03d6-4b7a-9282-497bb1c97f15"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocdca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XF_Biomass" metaid="_7225f85e-e5f6-4220-ad18-5b756a79b0ba" 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species="M_3ooctACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otex" metaid="_2be83b09-483b-4a46-9dd0-31a07515d995" name="H2O_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2be83b09-483b-4a46-9dd0-31a07515d995"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ac_e" metaid="_7ec6edd5-b5d3-48a6-9815-9a46c1f4fcc0" name="R_EX_ac_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7ec6edd5-b5d3-48a6-9815-9a46c1f4fcc0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ac_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPCTn" metaid="_108332eb-3f81-4162-b8e3-1bcd0dc6caa3" name="R_ASPCTn" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( No_Assignment AND XFCFBP8418_020390 ) OR ( XFCFBP8418_020390 )</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 2.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_108332eb-3f81-4162-b8e3-1bcd0dc6caa3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020390"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020390"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISTD" metaid="b55307a6-0e24-4c04-a18a-50fb06f80c9e" name="histidinol_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020320</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b55307a6-0e24-4c04-a18a-50fb06f80c9e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_histd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3abcpp" metaid="_9522d0b7-f772-47d2-a160-5075d1284f88" name="Nitrate_ABC_transport" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007680</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.26</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9522d0b7-f772-47d2-a160-5075d1284f88"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.26"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCEAtexi" metaid="_23f15e46-b806-4dd5-8ede-cad6055826b4" name="R_HDCEAtexi" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23f15e46-b806-4dd5-8ede-cad6055826b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdcea_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdcea_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYNP2r" metaid="d6acaab4-06bd-4525-97c8-5c45785d9e5e" name="pyrimidine_nucleoside_phosphorylase__uracil_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d6acaab4-06bd-4525-97c8-5c45785d9e5e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ura_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX2s" metaid="_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9" name="methionine_oxidation_2__spontaneous_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3599ab7d-5ca1-4f48-a7d6-a92fe92064c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_R_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPDH" metaid="faddba79-b4a3-4926-bce0-a53eb0bca6b4" name="imidazoleglycerol_phosphate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020300</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.2.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faddba79-b4a3-4926-bce0-a53eb0bca6b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020300"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_eig3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_imacp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP8" metaid="c6e6c163-fb35-4065-9483-b861979d1fb8" name="R_NTPP8" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c6e6c163-fb35-4065-9483-b861979d1fb8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP7" metaid="_046bdf28-c0e5-4faf-83a5-02f473f3fdb9" name="R_NTPP7" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_046bdf28-c0e5-4faf-83a5-02f473f3fdb9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_s_e" metaid="d58ebf7a-8409-4264-993d-2093e0bf8638" name="R_EX_s_e" reversible="true"> + 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name="Nucleoside_triphosphate_pyrophosphorylase__itp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002620</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_191b40e0-ca4d-44a4-9c02-9d8ce4932b14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP4" metaid="_7ab016f3-69ae-4eed-8885-9d94da6b251a" name="Nucleoside_triphosphate_pyrophosphorylase__ctp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7ab016f3-69ae-4eed-8885-9d94da6b251a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZpp" metaid="e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d" name="R_LACZpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.108</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5b8a7d7-1c63-468e-a49a-389a1d5f2d2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.108"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_lcts_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gal_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glc_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCDi" metaid="ae9654e3-8ff5-405c-8ebc-a113bfcad1e6" name="succinate_dehydrogenase__irreversible_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024610 AND XFCFBP8418_024620 AND XFCFBP8418_024640</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.3.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae9654e3-8ff5-405c-8ebc-a113bfcad1e6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024640"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP3" metaid="ba93ca71-afa0-469e-9d7f-1bd91cd4434a" name="Nucleoside_triphosphate_pyrophosphorylase__dctp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba93ca71-afa0-469e-9d7f-1bd91cd4434a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP6" metaid="ed757e09-76c6-4cca-8623-918f4efc4b9b" name="R_NTPP6" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed757e09-76c6-4cca-8623-918f4efc4b9b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTPP5" metaid="f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e" name="Nucleoside_triphosphate_pyrophosphorylase__datp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015800</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f14e6afc-e004-4b73-8d6d-6c8c0bb24d7e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METDabcpp" metaid="_9bc8d89b-7d82-4017-b7e1-0759a6ae5774" name="R_METDabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010500 AND XFCFBP8418_010510 AND XFCFBP8418_010520</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9bc8d89b-7d82-4017-b7e1-0759a6ae5774"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010520"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PG160abcpp" metaid="_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150" name="phosphatidylglycerol_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_86d0bbc7-9a05-4fd3-935a-bcf7aa6d3150"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg160_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPS4rpp" metaid="f0bf626d-9959-4d50-b908-57a66d78dd55" name="ATP_synthase__four_protons_for_one_ATP___periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023580 AND XFCFBP8418_023590 AND XFCFBP8418_023600 AND XFCFBP8418_023610 AND XFCFBP8418_023620 AND XFCFBP8418_023630 AND XFCFBP8418_023640 AND XFCFBP8418_023650</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 3.6.3.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f0bf626d-9959-4d50-b908-57a66d78dd55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023600"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023610"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023580"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023640"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023630"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023650"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMAOTr" metaid="e6386201-1524-44f5-bc9e-ff5b5450bfa2" name="adenosylmethionine_8_amino_7_oxononanoate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015830</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.62</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e6386201-1524-44f5-bc9e-ff5b5450bfa2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.62"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015830"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_8aonn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amob_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAAt2_2pp" metaid="_5b7ec468-c57e-4f07-8b94-82144d9e3605" name="R_OAAt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b7ec468-c57e-4f07-8b94-82144d9e3605"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + <speciesReference constant="true" species="M_oaa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH3c" metaid="cf25787d-b625-4e50-854a-5f0419385415" name="R_NH3c" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf25787d-b625-4e50-854a-5f0419385415"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENOPH" metaid="ab9e5532-81ce-4b2e-8009-a6f5c6645073" name="R_ENOPH" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020250</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 3.1.3.77</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab9e5532-81ce-4b2e-8009-a6f5c6645073"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.77"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO2" metaid="_328d0e4c-75eb-41bd-8f17-10156c122052" name="Oxygen_Independent_coproporphyrinogen_III_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002610</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.99.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_328d0e4c-75eb-41bd-8f17-10156c122052"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_xyl_D_e" metaid="_2d657b08-0cfe-4ab3-852f-cb44d3994a2d" name="R_EX_xyl_D_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d657b08-0cfe-4ab3-852f-cb44d3994a2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_xyl_D_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LSERDHr" metaid="_1b843714-69dc-4846-9dd8-d0bb20effff2" name="R_LSERDHr" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.276</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1b843714-69dc-4846-9dd8-d0bb20effff2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.276"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2amsa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METOX1s" metaid="fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5" name="methionine_oxidation__spontaneous_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fc65cd2a-80ce-466a-bb41-c6bf6e2b84b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtpp" metaid="_6d421127-f3ae-416c-94fc-18eb4cc116eb" name="R_FEENTERtpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025340</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d421127-f3ae-416c-94fc-18eb4cc116eb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_enter_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt2rpp" metaid="_8f779ea9-4a35-44b7-b02b-61e49784d0bd" name="R_ACt2rpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f779ea9-4a35-44b7-b02b-61e49784d0bd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGMT" metaid="e06ab7fc-72b8-431b-a687-75473d1666e8" name="phosphoglucomutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 5.4.2.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e06ab7fc-72b8-431b-a687-75473d1666e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + 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<rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_for_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_for_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSERTA" metaid="_68945973-e5de-40c3-8e9d-e68a33ce7a1d" name="homoserine_O_trans_acetylase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005140</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF 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species="M_dtdp4d6dm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtpp" metaid="_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20" name="3_hydroxypropionate_transport_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99c34c8b-d2d9-4d75-ba6c-3a468da8bb20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + 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+ </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPNCL2" metaid="ac9799a1-9612-46a2-9fcf-eb8e479756a9" name="phosphopantothenate_cysteine_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac9799a1-9612-46a2-9fcf-eb8e479756a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL160t2pp" metaid="_189bb35a-cccc-4787-93d1-376f4a96741d" name="fatty_acid_CoA_ligase__hexadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_189bb35a-cccc-4787-93d1-376f4a96741d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pmtcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G6PDH2r" metaid="_18f38ad3-0c49-4a07-b92b-0b0a39704b2a" name="glucose_6_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024680</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 1.1.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18f38ad3-0c49-4a07-b92b-0b0a39704b2a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR140x" metaid="_41865b96-d697-49fe-a260-28590901b124" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_41865b96-d697-49fe-a260-28590901b124"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPDRR" metaid="e4371e03-e60d-4744-a7bf-f8b7297e70bc" name="dTDP_4_dehydrorhamnose_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026220</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.133</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e4371e03-e60d-4744-a7bf-f8b7297e70bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.133"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp4d6dm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPGDr" metaid="_581244d5-f3bb-46eb-9469-fd73d7ae2e78" name="UDPglucose_6_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018680</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_581244d5-f3bb-46eb-9469-fd73d7ae2e78"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_udpglcur_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLTGY1pp" metaid="_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a" name="murein_lytic_transglycosylase__murein4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_003940 ) OR ( XFCFBP8418_019770 )</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0296d9fc-1f09-40ab-8bf9-59a09c3ba31a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019770"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PItex" metaid="_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d" name="phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3de5ad84-d9ef-4513-b1a1-89ae96a9e24d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pi_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INSEPIH" metaid="a8f99b02-7604-48a7-acc9-11a945e0f445" name="3D__3_5_4__trihydroxycyclohexane_1_2_dione_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8f99b02-7604-48a7-acc9-11a945e0f445"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM3PL" metaid="_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6" name="UDP_N_acetylmuramate_L_alanyl_gamma_D_glutamyl_meso_diaminopimelate_ligase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026060</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 6.3.2.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_99e0cf8b-7c15-4b53-9740-9c2a31a7e1d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_LalaDgluMdap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORTS" metaid="_0197284e-9752-40f7-a083-ab13da2f90e4" name="dihydroorotase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025380</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0197284e-9752-40f7-a083-ab13da2f90e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cbasp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PRASCS" metaid="_28e8db9c-a6c6-4596-8ddf-48b74c98cd53" name="phosphoribosylaminoimidazolesuccinocarboxamide_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026780</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28e8db9c-a6c6-4596-8ddf-48b74c98cd53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_25aics_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNtex" metaid="af01089c-0f17-484a-8e6b-ac20efef9a8f" name="L_glutamine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af01089c-0f17-484a-8e6b-ac20efef9a8f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mn2_e" metaid="_35d09179-85ad-4ed9-982a-a811ce8bfd7d" name="R_EX_mn2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_35d09179-85ad-4ed9-982a-a811ce8bfd7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGP140abcpp" metaid="_64db8afd-c17f-4e58-8243-c385b91488b9" name="phosphatidylglycerophosphate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64db8afd-c17f-4e58-8243-c385b91488b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_arg_L_e" metaid="_4300546b-8d5e-44b0-a2a6-0312ee8de286" name="R_EX_arg_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4300546b-8d5e-44b0-a2a6-0312ee8de286"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SCYSDS" metaid="a0191e6b-2355-48f8-956c-7a99c741781e" name="R_SCYSDS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002960 AND XFCFBP8418_025330</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a0191e6b-2355-48f8-956c-7a99c741781e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002960"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025330"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufse_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufsesh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT160" metaid="_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe" name="1_hexadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b26aa1f-34ca-4dad-ad61-a2a6b9b9bdfe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASEPG" metaid="_23f1c327-2a1b-4fcf-90cc-bfefbde6302d" name="R_AMPTASEPG" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015310</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.4.11.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23f1c327-2a1b-4fcf-90cc-bfefbde6302d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015310"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_progly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT161" metaid="c64617ac-311d-4b54-aef2-376374955091" name="1_hexadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c64617ac-311d-4b54-aef2-376374955091"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NNDPR" metaid="_83935dc5-8ee9-4dad-8a04-ec426c27cb6f" name="nicotinate_nucleotide_diphosphorylase__carboxylating_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000560</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.4.2.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83935dc5-8ee9-4dad-8a04-ec426c27cb6f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nicrnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tex" metaid="_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5" name="hydrogen_peroxide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a3c5df9-fcc2-41ee-85d3-57088b40d9d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHK3Dr" metaid="_7406398b-f559-4d85-baa1-6920b86427ee" name="shikimate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.25</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7406398b-f559-4d85-baa1-6920b86427ee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.25"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3dhsk_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGK" metaid="_3aeb879a-defd-43b3-9081-935e4c82a433" name="acetylglutamate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.7.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3aeb879a-defd-43b3-9081-935e4c82a433"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK2" metaid="_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14" name="R_XYLK2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e88a5e9-cd1c-4f71-90df-822c1c0b7c14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xylu_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNt2pp" metaid="_15383220-6b0e-4974-b2b1-6ab3c9986d1b" name="manganese__Mn_2__transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_15383220-6b0e-4974-b2b1-6ab3c9986d1b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGS" metaid="_134e5c0a-594b-48d7-ac9a-3c801410c386" name="N_acetylglutamate_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025260</p> + <p>SUBSYSTEM: Glutamate_Metabolism</p> + <p>EC_NUMBER: 2.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_134e5c0a-594b-48d7-ac9a-3c801410c386"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acglu_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR141x" metaid="c193df77-3f15-4f73-bf4a-295ff19c3f63" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c193df77-3f15-4f73-bf4a-295ff19c3f63"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUSAtpp" metaid="_2a1e61c7-0d81-43e9-92ba-81589d52587d" name="Fusidic_acid_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a1e61c7-0d81-43e9-92ba-81589d52587d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_fusa_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fusa_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HEX1" metaid="b51b0918-0366-46af-9051-2f9d45d9dce0" name="hexokinase__D_glucose_ATP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024690</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b51b0918-0366-46af-9051-2f9d45d9dce0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA141abcpp" metaid="af4f3f74-fbd6-48a3-b446-daf7dc9619e9" name="phosphatidate_transport_via_ABC_system__n_C14_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af4f3f74-fbd6-48a3-b446-daf7dc9619e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2tex" metaid="_010331b8-4e51-4805-adbd-540f39c725d8" name="magnesium__Mg_2__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_010331b8-4e51-4805-adbd-540f39c725d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UREAtpp" metaid="f4b7ccf6-301d-4907-9022-b862e6a29f46" name="Urea_transport_via_facilitate_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020710</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f4b7ccf6-301d-4907-9022-b862e6a29f46"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_urea_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS141pp" metaid="ab3b6156-8ad9-47af-bfcc-e942f8f7392c" name="cardiolipin_synthase__periplasmic__n_C14_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab3b6156-8ad9-47af-bfcc-e942f8f7392c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_clpn141_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDCPDP" metaid="f70432ed-67fa-4f14-9fa2-7dd667e8358a" name="undecaprenyl_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017720</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f70432ed-67fa-4f14-9fa2-7dd667e8358a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYtex" metaid="_1663fe58-4112-48e2-8cef-d372f9bc3c20" name="glycine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1663fe58-4112-48e2-8cef-d372f9bc3c20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CA2tex" metaid="_6f33b15b-8f42-472c-9e1e-5a417313088f" name="R_CA2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6f33b15b-8f42-472c-9e1e-5a417313088f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LACZ" metaid="b6a2eacf-02ef-4757-b073-21d3fe545be6" name="R_LACZ" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007430</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.23</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b6a2eacf-02ef-4757-b073-21d3fe545be6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.23"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lcts_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPR" metaid="bed293e1-9ce9-416c-b0e5-fa5e6511d118" name="N_acetyl_g_glutamyl_phosphate_reductase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025250</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.2.1.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bed293e1-9ce9-416c-b0e5-fa5e6511d118"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acg5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Bztex" metaid="_5b62e373-461f-4a8a-92f4-c11ee060f8aa" name="R_Bztex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5b62e373-461f-4a8a-92f4-c11ee060f8aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_bz_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_bz_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLabcpp" metaid="_49d829e8-5877-4754-82ca-e6d254215d5b" name="R_XYLabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_019450</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49d829e8-5877-4754-82ca-e6d254215d5b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xyl_D_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_2" metaid="a62fee40-e915-4b75-9c4c-217c6b7d6451" name="R_PFK_2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a62fee40-e915-4b75-9c4c-217c6b7d6451"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tag6p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tagdp_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ala_L_e" metaid="bd85b437-c114-49ec-9f03-45aab86b866e" name="R_EX_ala_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd85b437-c114-49ec-9f03-45aab86b866e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ala_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_A5PISO" metaid="_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4" name="arabinose_5_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003470</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.3.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dc617f3-cd4a-4062-9e2c-9ecde8ac30b4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003470"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ara5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK_3" metaid="cf04e16a-842a-43d4-9bcc-7c6ce92d5f34" name="R_PFK_3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cf04e16a-842a-43d4-9bcc-7c6ce92d5f34"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_s17bp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DMPPS" metaid="_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9" name="1_hydroxy_2_methyl_2__E__butenyl_4_diphosphate_reductase__dmpp_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004660</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.17.7.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c69784a-fed3-4cee-b9ff-0b780aa4c2e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.17.7.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004660"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2mb4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dmpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCabcpp" metaid="e09fa73e-4241-4ee8-aace-6000c6002843" name="putrescine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e09fa73e-4241-4ee8-aace-6000c6002843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabctex" metaid="d0901669-e727-4530-ae87-74cfa07d86b0" name="R_LIPAabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d0901669-e727-4530-ae87-74cfa07d86b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipidA_XF_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THFAT" metaid="a264d301-0933-454c-a596-0572f42082d6" name="Tetrahydrofolate_aminomethyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a264d301-0933-454c-a596-0572f42082d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPOS" metaid="_2abbd216-a9dd-4510-8611-8ff11ef704b3" name="Lipoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022360</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.8.1.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2abbd216-a9dd-4510-8611-8ff11ef704b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.8.1.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022360"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_octapb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2fe2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dad_5_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_lipopb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_met_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEabcpp" metaid="_54264b6d-1559-46bf-93b1-caa233327906" name="R_PHEMEabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_005050 AND XFCFBP8418_005060 AND XFCFBP8418_005070 AND XFCFBP8418_005090</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_54264b6d-1559-46bf-93b1-caa233327906"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005090"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005050"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005070"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMH" metaid="_425d6e2c-d506-41be-b57a-4943a04a2ff4" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_425d6e2c-d506-41be-b57a-4943a04a2ff4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT180" metaid="_16fc294f-dc7e-4e90-9467-057ba96fdbad" name="1_octadecanoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_16fc294f-dc7e-4e90-9467-057ba96fdbad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa180_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGPAT181" metaid="ee2e90a2-a5c0-43d3-b432-96199a842fcd" name="1_octadec_7_enoyl_sn_glycerol_3_phosphate_O_acyltransferase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015910</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.51</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee2e90a2-a5c0-43d3-b432-96199a842fcd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.51"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLNabc" metaid="_83627658-def1-4564-a3c7-31ec67a96de5" name="R_GLNabc" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83627658-def1-4564-a3c7-31ec67a96de5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD181" metaid="_9a7e24d6-b41f-423f-b110-002e27e6c5b9" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a7e24d6-b41f-423f-b110-002e27e6c5b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c11vaceACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD180" metaid="_056f92d6-acaa-44c3-90a4-c6a31f073669" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_056f92d6-acaa-44c3-90a4-c6a31f073669"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_toctd2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE161abcpp" metaid="_77f7a92e-9927-4d64-b397-a4fcfa8138fe" name="phosphatidylethanolamine_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_77f7a92e-9927-4d64-b397-a4fcfa8138fe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMtex" metaid="ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a" name="R_GAMtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ead08a95-0a7b-4d68-953d-b8dd8a7c3a6a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gam_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERtex" metaid="a8ef9bf8-4075-4ca4-a656-34f3d41452c6" name="L_serine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a8ef9bf8-4075-4ca4-a656-34f3d41452c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ser_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ser_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFR" metaid="_1f19b72f-eeda-4abf-920a-07d6e7cffb38" name="dihydrofolate_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.5.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1f19b72f-eeda-4abf-920a-07d6e7cffb38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHFS" metaid="_13a5fe0f-2844-417f-a8eb-1abf93b01f20" name="dihydrofolate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000740</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13a5fe0f-2844-417f-a8eb-1abf93b01f20"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000740"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FEENTERtex" metaid="eacf7c47-e3ea-4bab-978d-9324629cf480" name="R_FEENTERtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012340</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eacf7c47-e3ea-4bab-978d-9324629cf480"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_enter_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_enter_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UPP3MT" metaid="fa32479a-0e66-4a55-a01e-631b6c2b6a7d" name="uroporphyrinogen_methyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa32479a-0e66-4a55-a01e-631b6c2b6a7d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_uppg3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLI1" metaid="cd735da3-d07f-42ea-9fa9-3f084052a9d4" name="R_XYLI1" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 5.3.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd735da3-d07f-42ea-9fa9-3f084052a9d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xyl_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_XYLK" metaid="_98a4c423-a9b2-42de-8f33-8674b923f3d6" name="xylulokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98a4c423-a9b2-42de-8f33-8674b923f3d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xylu_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHRDHpp" metaid="_84d8b4a0-718d-491a-84ac-f7e7523b2fad" name="glutathione_hydralase__periplasmic_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025410</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.4.19.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84d8b4a0-718d-491a-84ac-f7e7523b2fad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.19.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025410"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cgly_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNtex" metaid="_5a476698-d09d-4f4c-a26c-fd193b04d412" name="R_CHTNtex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5a476698-d09d-4f4c-a26c-fd193b04d412"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSAR" metaid="_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3" name="malonic_semialdehyde_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015390</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 1.1.1.298</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_98df4efe-41f3-49e7-9a7f-8987cb7ec2e3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.298"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPMS2" metaid="_3b4b5613-333a-4920-aa78-cf2eed4f8370" name="4_amino_2_methyl_5_phosphomethylpyrimidine_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016510 ) OR ( XFCFBP8418_027850 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.99.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b4b5613-333a-4920-aa78-cf2eed4f8370"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027850"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_air_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP3pp" metaid="_573aff9f-f091-49a1-9e66-52e4879215fc" name="murein_D_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_573aff9f-f091-49a1-9e66-52e4879215fc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARD2" metaid="ce7fd466-1fc5-4da8-a40d-5d70368ec9fa" name="R_ARD2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020240</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 1.13.11.54</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ce7fd466-1fc5-4da8-a40d-5d70368ec9fa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.13.11.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhmtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4met2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_P5CD1p" metaid="_4ad84f32-ce3b-4630-8826-a3020d5140e2" name="1_pyrroline_5_carboxylate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4ad84f32-ce3b-4630-8826-a3020d5140e2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FOMETR" metaid="_1651cb82-c525-41cb-8f93-9e8bb6281ea6" name="R_FOMETR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001390</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 2.1.2.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1651cb82-c525-41cb-8f93-9e8bb6281ea6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.2.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Kt2pp" metaid="_8718fecd-eee8-420f-a4be-3aeee5445ae4" name="potassium_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000330 ) OR ( XFCFBP8418_016360 ) OR ( XFCFBP8418_027690 )</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8718fecd-eee8-420f-a4be-3aeee5445ae4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027690"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_k_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_k_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDPGDH" metaid="_8e841417-5fac-40c4-a287-87f2a0124da0" name="dTDPglucose_4_6_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026250</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.46</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e841417-5fac-40c4-a287-87f2a0124da0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.46"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdpglu_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtdp4d6dg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4ex" metaid="_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0" name="R_GLYCLTt4ex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ce94b73-8d6a-4acf-815e-aec66fc9a7d0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyclt_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DXPRIi" metaid="bffea5f3-c1e8-4d36-9200-91ba586e143d" name="1_deoxy_D_xylulose_reductoisomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024850</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.267</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bffea5f3-c1e8-4d36-9200-91ba586e143d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.267"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2me4p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASNTRS" metaid="_84fdebe3-555f-439e-87c7-5a4f3f5c0d31" name="R_ASNTRS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012160</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.22</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84fdebe3-555f-439e-87c7-5a4f3f5c0d31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.22"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asn_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYTBO3_4pp" metaid="_01dd1124-5e22-4fa3-8cee-1216e6e867e1" name="cytochrome_oxidase_bo3__ubiquinol_8__4_protons___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003690 AND XFCFBP8418_003700 AND XFCFBP8418_003710 AND XFCFBP8418_003720</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.10.3.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01dd1124-5e22-4fa3-8cee-1216e6e867e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.10.3.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR120x" metaid="_635730d1-8a7f-4230-8bd9-0b5daef1f031" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_635730d1-8a7f-4230-8bd9-0b5daef1f031"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tddec2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ddcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DM_EPS_XF_e" metaid="_5512fd43-90cc-4517-bc0a-5a90ba495950" name="R_DM_EPS_XF_e" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5512fd43-90cc-4517-bc0a-5a90ba495950"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_EPS_XF_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts/> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_dextrin_DEC_e_" metaid="d21c4e58-5421-466c-aa2b-2a2f493b5588" name="R_dextrin_DEC_e_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d21c4e58-5421-466c-aa2b-2a2f493b5588"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dextrin_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_14aglucan_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRD_L" metaid="_7951650e-b0b5-43cb-9716-1a425fd82b23" name="L_threonine_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017920</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 4.3.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7951650e-b0b5-43cb-9716-1a425fd82b23"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017920"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MAN1PT2r" metaid="f011fe9c-b111-4709-a072-ea9a04772109" name="R_MAN1PT2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026210</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f011fe9c-b111-4709-a072-ea9a04772109"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man1p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2t2pp" metaid="b471c729-206a-4924-bb5d-60b302adf7d5" name="iron__II__transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025100</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b471c729-206a-4924-bb5d-60b302adf7d5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNTPPA" metaid="_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7" name="R_DNTPPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.67</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c7cc316-928b-4cca-b6ce-eee5a4d3a1a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.67"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ahdt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTRS" metaid="_59bfe82d-057b-4478-a969-8ad19fed6667" name="Valyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015270</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59bfe82d-057b-4478-a969-8ad19fed6667"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015270"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaval_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_valtrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_man_e" metaid="c0b99037-9bd3-47d9-b2dd-d8746de1bfb6" name="R_EX_man_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0b99037-9bd3-47d9-b2dd-d8746de1bfb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DGLUISO" metaid="_5e26ce7d-687d-4b74-8e67-070b09d6f6a4" name="5_deoxy_D_glucuronic_acid_isomerase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5e26ce7d-687d-4b74-8e67-070b09d6f6a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dglca_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dkglc_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACt4pp" metaid="_3fdc7bfe-8c80-414e-98a0-8c6be1009c89" name="Na__Acetate_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fdc7bfe-8c80-414e-98a0-8c6be1009c89"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ac_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD161" metaid="_1629e996-4f3c-4656-9eac-7b497c254231" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1629e996-4f3c-4656-9eac-7b497c254231"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_t3c9palmeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDEP1pp" metaid="c3ea7a13-1314-4e42-9915-b527a887f011" name="murein_D_D_endopeptidase__murein4px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018620</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c3ea7a13-1314-4e42-9915-b527a887f011"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD160" metaid="_1a5a8a65-35a7-4682-af84-23430d8143a7" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a5a8a65-35a7-4682-af84-23430d8143a7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tpalm2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtpp" metaid="_62636e29-a15d-4c1a-b82f-e7d10ec38aed" name="R_CLtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_62636e29-a15d-4c1a-b82f-e7d10ec38aed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_so4_e" metaid="c973e658-83ca-4cdb-884a-5b3695cd90e7" name="R_EX_so4_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c973e658-83ca-4cdb-884a-5b3695cd90e7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_so4_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROabcpp" metaid="d5fa365b-a304-44ee-ae06-93304242dd43" name="L_proline_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 AND XFCFBP8418_007690 ) OR ( XFCFBP8418_022120 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d5fa365b-a304-44ee-ae06-93304242dd43"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007690"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR121x" metaid="_2b2701db-a16c-4397-bbb6-2fac326bbbaa" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2b2701db-a16c-4397-bbb6-2fac326bbbaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c5ddeceACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cddec5eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACMUMptspp" metaid="f7b75691-42ce-44e0-ade6-9e876276580c" name="R_ACMUMptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7b75691-42ce-44e0-ade6-9e876276580c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acmum_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TTRCYCtpp" metaid="f42c71ab-0b19-4b93-9518-684a533bc0fd" name="Tetracycline_transport_via_TolC_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f42c71ab-0b19-4b93-9518-684a533bc0fd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ttrcyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ttrcyc_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALt2" metaid="_70336839-2c1b-4ec1-95ff-43ed5dcb735c" name="R_GALt2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_70336839-2c1b-4ec1-95ff-43ed5dcb735c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gal_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2tex" metaid="_17065047-6a16-4712-85c5-43d495f00b10" name="R_BTNt2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_17065047-6a16-4712-85c5-43d495f00b10"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_btn_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_BTNt2ipp" metaid="_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394" name="R_BTNt2ipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4c4a9986-87b2-4f2c-9a86-7cbb89e5c394"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_btn_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_btn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UAPGR" metaid="_752a8888-0aab-47a8-97bc-e69e63a4222b" name="UDP_N_acetylenolpyruvoylglucosamine_reductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012220</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.98</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_752a8888-0aab-47a8-97bc-e69e63a4222b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.98"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_uaccg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uamr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_St" metaid="_734bbc0a-8628-4df7-9cb5-6e444f23dcb6" name="R_St" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_734bbc0a-8628-4df7-9cb5-6e444f23dcb6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_s_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICL" metaid="_37a917fc-b955-4189-aed5-76c371c3896e" name="Isocitrate_lyase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Anaplerotic_Reactions</p> + <p>EC_NUMBER: 4.1.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_37a917fc-b955-4189-aed5-76c371c3896e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPHs" metaid="_9c2c5156-ceed-4286-a628-a988c5de0fbe" name="R_ATPHs" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c2c5156-ceed-4286-a628-a988c5de0fbe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_itp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK4" metaid="_8e6b4881-d61c-4ae2-9d38-348c4a9acc87" name="nucleoside_diphosphate_kinase__ATP_dTDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e6b4881-d61c-4ae2-9d38-348c4a9acc87"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dtdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dttp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACLS" metaid="f6e3c3c3-5844-456c-89fa-a9cdbd61623d" name="acetolactate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.2.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f6e3c3c3-5844-456c-89fa-a9cdbd61623d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alac_S_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK5" metaid="_8dfdec93-4f40-4c39-9f3c-d96e30952e65" name="nucleoside_diphosphate_kinase__ATP_dGDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8dfdec93-4f40-4c39-9f3c-d96e30952e65"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SSALy" metaid="_8f4264f6-9e76-4632-9aec-d02cebd4e009" name="R_SSALy" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 1.2.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f4264f6-9e76-4632-9aec-d02cebd4e009"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sucsal_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MG2t3_2pp" metaid="_24a2065d-926c-4daf-a5a3-c451a3bdd574" name="R_MG2t3_2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24a2065d-926c-4daf-a5a3-c451a3bdd574"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mg2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGMt2pp" metaid="_499cd0da-ac38-445f-be2c-0fd37860bb0d" name="GlcNAc_anhMurNAc_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_499cd0da-ac38-445f-be2c-0fd37860bb0d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK2" metaid="fb8b0ac5-9d06-4124-8cdf-31744363fa53" name="nucleoside_diphosphate_kinase__ATP_UDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fb8b0ac5-9d06-4124-8cdf-31744363fa53"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGt2rpp" metaid="ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54" name="R_ARGt2rpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020210</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ccccc1d4-b6f1-49bf-85f7-6f7c444a7c54"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK3" metaid="_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6" name="nucleoside_diphosphate_kinase__ATP_CDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6937dd0f-e67b-4fa0-9e97-a7fa4f63c3a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORS" metaid="_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26" name="chorismate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003900</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.2.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a897d1f-49f8-4da7-bd88-a7f00cd4ff26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003900"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THYMt3pp" metaid="_0f387fca-8fc8-4707-9393-ce4bf257835e" name="R_THYMt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0f387fca-8fc8-4707-9393-ce4bf257835e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thym_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thym_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK1" metaid="_5ff4275e-3068-414e-9825-963bd0aaaace" name="nucleoside_diphosphate_kinase__ATP_GDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ff4275e-3068-414e-9825-963bd0aaaace"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHORM" metaid="c9ef9723-b4f3-45c4-b434-b1d82a17f661" name="chorismate_mutase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021090</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 5.4.99.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c9ef9723-b4f3-45c4-b434-b1d82a17f661"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.99.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021090"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLNTtex" metaid="_59bfd58d-db80-4046-87fa-07e1fe20a2e9" name="R_SLNTtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_59bfd58d-db80-4046-87fa-07e1fe20a2e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_slnt_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_slnt_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_lys_L_e" metaid="_34b3bd5b-8073-429c-8023-21cc0a758eb2" name="R_EX_lys_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34b3bd5b-8073-429c-8023-21cc0a758eb2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_lys_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK8" metaid="df515a47-fefa-4505-b7b3-5dd650efff0a" name="nucleoside_diphosphate_kinase__ATP_dADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#df515a47-fefa-4505-b7b3-5dd650efff0a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dadp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_datp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK6" metaid="_1cf12621-15ab-45dc-8978-5853bee37832" name="nucleoside_diphosphate_kinase__ATP_dUDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1cf12621-15ab-45dc-8978-5853bee37832"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dudp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dutp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NDPK7" metaid="_6ae55dbd-0ec3-48a3-87e5-aeab9240820a" name="nucleoside_diphosphate_kinase__ATP_dCDP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007250 ) OR ( XFCFBP8418_026070 )</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6ae55dbd-0ec3-48a3-87e5-aeab9240820a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007250"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dcdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD141" metaid="_90032cc8-9ce7-4a28-933b-85c43b405895" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_90032cc8-9ce7-4a28-933b-85c43b405895"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_t3c7mrseACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ETFDH" metaid="fa3dc8e0-7469-4e03-9a23-76f958d313c6" name="Electron_transferring_flavoprotein_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022160 AND XFCFBP8418_026260 AND XFCFBP8418_026270</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.5.5.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa3dc8e0-7469-4e03-9a23-76f958d313c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.5.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026260"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026270"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_etfrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_etfox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HAD140" metaid="ff0ba4ff-1b01-455b-b108-acf6ac66253b" name="3_hydroxyacyl__acyl_carrier_protein__dehydratase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006750 ) OR ( XFCFBP8418_024890 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.59</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff0ba4ff-1b01-455b-b108-acf6ac66253b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.59"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024890"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006750"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tmrs2eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDH2" metaid="e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd" name="Malate_dehydrogenase__ubiquinone_8_as_acceptor_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009850</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.5.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1d8bd90-d0d4-467b-8a79-3b5c9ac34ffd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.5.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009850"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mal_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR181tipp" metaid="_23a8f60b-f236-41c5-930b-37dcce5a346b" name="R_12DGR181tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_23a8f60b-f236-41c5-930b-37dcce5a346b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr181_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr181_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD9" metaid="d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7" name="5__nucleotidase__GMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d8eb237f-c639-4696-b1d4-d9ed1d3f2ce7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PMPK" metaid="_748158b4-58e6-4058-b881-81fe9214c5f9" name="phosphomethylpyrimidine_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.4.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_748158b4-58e6-4058-b881-81fe9214c5f9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2mahmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD5" metaid="b12d5780-c02d-4806-a0aa-ae388924f32e" name="5__nucleotidase__dTMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b12d5780-c02d-4806-a0aa-ae388924f32e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_thymd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHPe" metaid="_07676509-b6dc-4312-b61e-6d00cf2d7843" name="glutathione_peroxidase__e_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016490 ) OR ( XFCFBP8418_027830 )</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_07676509-b6dc-4312-b61e-6d00cf2d7843"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027830"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_e" stoichiometry="2"/> + <speciesReference constant="true" species="M_h2o2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_e" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD6" metaid="b2e4836e-8385-49c1-bce5-d7b29f6708a9" name="5__nucleotidase__dAMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b2e4836e-8385-49c1-bce5-d7b29f6708a9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_damp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dad_2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD7" metaid="ef706ea1-e25a-4328-8f3e-3adff8714efc" name="5__nucleotidase__AMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef706ea1-e25a-4328-8f3e-3adff8714efc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD8" metaid="_8a0f2edf-f196-43d9-bafe-75bb488fbe30" name="5__nucleotidase__dGMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8a0f2edf-f196-43d9-bafe-75bb488fbe30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dgmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dgsn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD1" metaid="_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2" name="5__nucleotidase__dUMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2af412c4-0b5e-4ea6-a36d-04b8d824a7c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_duri_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD2" metaid="_44c95b00-242e-492b-b9ec-734ffe6b1499" name="5__nucleotidase__UMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_44c95b00-242e-492b-b9ec-734ffe6b1499"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_uri_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD3" metaid="_3fa0db80-f0dd-4110-b165-68ae0a69d35a" name="5__nucleotidase__dCMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3fa0db80-f0dd-4110-b165-68ae0a69d35a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dcyt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NTD4" metaid="ea65d95f-0616-4577-92a3-5925cbdc1c70" name="5__nucleotidase__CMP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010630</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.1.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ea65d95f-0616-4577-92a3-5925cbdc1c70"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010630"/> + 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rdf:about="#bd3417a6-6b7f-4ceb-bcaa-c40abddd67ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pheme_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pheme_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DBTSr" metaid="b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee" name="dethiobiotin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5bd87e7-9dc6-46dd-8b15-72d3bba6ccee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dann_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtbt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3Gabcpp" metaid="_0a9e571a-729f-4b63-a847-32f19c7e41dd" name="R_FE3Gabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012840</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0a9e571a-729f-4b63-a847-32f19c7e41dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_gtp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe3_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCGSD_c" metaid="c37202c6-f0f8-4fd7-aeaf-7049b792bf93" name="R_GLCGSD_c" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c37202c6-f0f8-4fd7-aeaf-7049b792bf93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_14aglucan_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="12"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2SO" metaid="db507ffb-2fd9-443e-9dfc-62c2a6653f5f" name="R_H2SO" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db507ffb-2fd9-443e-9dfc-62c2a6653f5f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TMDS" metaid="_00cd6cef-032d-4134-8100-858239e9af41" name="thymidylate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021160</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.1.1.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00cd6cef-032d-4134-8100-858239e9af41"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dtmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhf_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PS" metaid="_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc" name="Pyridoxine_5__phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010890 AND XFCFBP8418_014620</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8bf4a65b-e5cb-4699-a6f4-fa2a050deccc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014620"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010890"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dxyl5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSERTr" metaid="_880ff223-84ce-40fd-b6b5-464a0a327b33" name="phosphoserine_transaminase_reversible" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> + <p>SUBSYSTEM: Glycine_and_Serine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_880ff223-84ce-40fd-b6b5-464a0a327b33"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3php_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pser_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMS" metaid="_89460829-87c3-46b3-8c6c-595f9fe28999" name="spermidine_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89460829-87c3-46b3-8c6c-595f9fe28999"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ptrc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_spmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGN" metaid="_2a015dd2-0581-48c4-9594-0a49331c188c" name="arginase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 3.5.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a015dd2-0581-48c4-9594-0a49331c188c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_orn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_urea_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CTPS2" metaid="_13da69ab-0d1c-4f42-bee4-2a1d39160097" name="CTP_synthase__glutamine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022240</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 6.3.4.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_13da69ab-0d1c-4f42-bee4-2a1d39160097"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ATPPRTr" metaid="_0c686895-bb92-4259-b366-6864383857b5" name="ATP_phosphoribosyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020330</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 2.4.2.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c686895-bb92-4259-b366-6864383857b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020330"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prbatp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP5pp" metaid="ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36" name="murein_D_D_carboxypeptidase__murein5p3p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffdcc002-2deb-49f2-9bb9-e9e6a9bfcd36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDX5PO" metaid="_803d8994-51db-41c0-8563-f8707cce7608" name="pyridoxine_5__phosphate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.4.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_803d8994-51db-41c0-8563-f8707cce7608"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pdx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROD2" metaid="b5d69dbf-275a-4438-95e0-a0da3d4b00f3" name="Proline_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 1.5.99.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5d69dbf-275a-4438-95e0-a0da3d4b00f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.99.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pro_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_1pyr5c_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_APCS" metaid="f189ca07-aa4c-49ba-a22a-686d1706b5f5" name="R_APCS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015370</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 2.5.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f189ca07-aa4c-49ba-a22a-686d1706b5f5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ametam_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_15dap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_na15dap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFD" metaid="db141efd-85a3-4f46-b622-01f77e5817da" name="methylenetetrahydrofolate_dehydrogenase__NADP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 1.5.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db141efd-85a3-4f46-b622-01f77e5817da"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.5.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mlthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTHFC" metaid="_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3" name="methenyltetrahydrofolate_cyclohydrolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004790</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 3.5.4.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fa06a26-166c-4fa3-93a0-1d5698a8b5b3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004790"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_methf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPBAT" metaid="_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3" name="O_Phospho_4_hydroxy_L_threonine_2_oxoglutarate_aminotransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021100</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.52</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b00da5e-5263-4a0f-8d84-3be9ce2e27c3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.52"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_phthr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP141pp" metaid="ae795ce0-e733-4557-8d0f-fdd8bc63b4e8" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ae795ce0-e733-4557-8d0f-fdd8bc63b4e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp141_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg141_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP5AH" metaid="_83169f0e-2340-4479-9035-d6c6f4bbc140" name="Ap5A_hydrolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.61</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_83169f0e-2340-4479-9035-d6c6f4bbc140"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ap5a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4PH" metaid="_19997018-7609-4bb6-84a0-d013de71994b" name="N_Acetyl_D_glucosamine_anhydrous_N_Acetylmuramyl_tetrapeptide_beta__1_4_N_acetylglucosaminidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021350</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19997018-7609-4bb6-84a0-d013de71994b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acgam_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREptspp" metaid="_533ae11a-b048-4dc4-99d8-e11df0190fc8" name="R_TREptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND No_Assignment2 AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_533ae11a-b048-4dc4-99d8-e11df0190fc8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment2"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tre6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHOr" metaid="_5200a072-a335-4b28-bb9d-b0006470ef4d" name="glutathione_oxidoreductase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002170</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.8.1.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5200a072-a335-4b28-bb9d-b0006470ef4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002170"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACGAMT" metaid="be79aead-a49a-4c67-903c-874f23419c47" name="R_ACGAMT" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#be79aead-a49a-4c67-903c-874f23419c47"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_udcpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_uacgam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ump_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_unaga_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR100x" metaid="f47bdb4a-719a-4aee-8dfa-7596f47b6ed8" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f47bdb4a-719a-4aee-8dfa-7596f47b6ed8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tdec2eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ZN2tex" metaid="ab2f5868-2024-44b9-887b-ccf667eb087f" name="R_ZN2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab2f5868-2024-44b9-887b-ccf667eb087f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_zn2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NO3tex" metaid="e1734774-24bd-4670-b857-68c7d7be46ae" name="nitrate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e1734774-24bd-4670-b857-68c7d7be46ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_no3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_no3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANHMK" metaid="_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a" name="1_6_anhydrous_N_Acetylmuramate_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015560</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: 2.7.1.170</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ad62f87-a3a2-479a-8241-0e7f5a57ad1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.170"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhm_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acmum6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MNabc_1" metaid="_04da6e87-f3dc-4788-93c3-c5599974807b" name="R_MNabc_1" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022890</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 3.6.3.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_04da6e87-f3dc-4788-93c3-c5599974807b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mn2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mn2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DCTPD2" metaid="_24b63732-de2d-45f4-a436-4d69eb4e5058" name="dCTP_deaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011560</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.5.4.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24b63732-de2d-45f4-a436-4d69eb4e5058"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.4.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011560"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ctp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SPMDtex" metaid="_9e27748f-20df-4e06-8900-612653c342f6" name="spermidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009840</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: 3.6.3.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9e27748f-20df-4e06-8900-612653c342f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_spmd_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_spmd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE3tex" metaid="_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc" name="iron__III__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1957b4ed-7e5b-4ac0-bd1f-6b1c41ba35bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fe3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fe3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTa" metaid="_67a44e2f-c272-4145-a365-5d7992ea2a59" name="aconitase__half_reaction_A__Citrate_hydro_lyase_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_67a44e2f-c272-4145-a365-5d7992ea2a59"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACONTb" metaid="ddd85e75-afbd-47f2-9d5f-910734316be2" name="aconitase__half_reaction_B__Isocitrate_hydro_lyase_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_022570 ) OR ( XFCFBP8418_025910 ) OR ( XFCFBP8418_025940 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 4.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ddd85e75-afbd-47f2-9d5f-910734316be2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025940"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acon_C_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUt2rpp" metaid="_09da3e46-6d4a-456a-b166-a0a0494d351b" name="R_GLUt2rpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_09da3e46-6d4a-456a-b166-a0a0494d351b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR160" metaid="c697ce5f-c134-46b1-b633-71634fdf17b9" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c697ce5f-c134-46b1-b633-71634fdf17b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3opalmACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hpalmACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_pro_L_e" metaid="_836b4621-e7d2-45ac-9d3a-a6be05a162a6" name="R_EX_pro_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_836b4621-e7d2-45ac-9d3a-a6be05a162a6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_pro_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR161" metaid="eba2b6d8-8b0f-4470-8be0-509695ddd781" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eba2b6d8-8b0f-4470-8be0-509695ddd781"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocpalm9eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcpalm9eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_K2L4Aabctex" metaid="_8f58e924-4608-434e-9a13-13ca1c09b76f" name="R_K2L4Aabctex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003500 AND XFCFBP8418_003510 AND XFCFBP8418_015320 AND XFCFBP8418_015330</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f58e924-4608-434e-9a13-13ca1c09b76f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003510"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015330"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015320"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TRDR" metaid="_84967ad6-6731-4f9e-bf52-1e7d8087edc7" name="thioredoxin_reductase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003190 AND XFCFBP8418_013260</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 1.8.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_84967ad6-6731-4f9e-bf52-1e7d8087edc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003190"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013260"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trdrd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU1Opp" metaid="_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be" name="Cuprous_Oxidase__Cu_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: 1.16.3.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2df0f7fa-a7cb-4f3e-a134-2a79c561a3be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.16.3.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu_p" stoichiometry="4"/> + <speciesReference constant="true" species="M_o2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="4"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT161" metaid="_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96" name="R_G3PAT161" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8743f99e-7c52-4a20-b3f9-ebd7f69a6f96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1hdec9eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPKr" metaid="_296dbd06-b104-4ade-8554-7fb5947ef74f" name="polyphosphate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012370</p> + <p>SUBSYSTEM: Oxidative_Phosphorylation</p> + <p>EC_NUMBER: 2.7.4.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_296dbd06-b104-4ade-8554-7fb5947ef74f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012370"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CDPMEK" metaid="_3d262e90-fef9-4e40-9171-7fa2af701e00" name="4__cytidine_5__diphospho__2_C_methyl_D_erythritol_kinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012890</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.148</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d262e90-fef9-4e40-9171-7fa2af701e00"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.148"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4c2me_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT160" metaid="_0d791462-eb70-44f7-9e4d-3b6f0b5916bc" name="R_G3PAT160" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d791462-eb70-44f7-9e4d-3b6f0b5916bc"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_palmACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1hdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR40x" metaid="bd1217d3-2f78-4182-a09d-af56c64865f2" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C4_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd1217d3-2f78-4182-a09d-af56c64865f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_but2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_butACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALR2" metaid="_1e88fcb4-f43e-4d83-a5ff-c5975edf1664" name="aldose_reductase__methylglyoxal_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_008650</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e88fcb4-f43e-4d83-a5ff-c5975edf1664"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_008650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acetol_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ThDPAT" metaid="_80a4c7df-ab7a-4bca-9b2f-19945f08db4e" name="R_ThDPAT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80a4c7df-ab7a-4bca-9b2f-19945f08db4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_athtp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IGPS" metaid="_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58" name="indole_3_glycerol_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026720</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 4.1.1.48</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1bc1f9b0-e8fa-4073-8597-eb6a18fa2e58"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.48"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2cpr5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ig3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3HPPtex" metaid="_29dee993-41e5-4ed3-aa67-0e67e024cdc7" name="3_hydroxypropionate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29dee993-41e5-4ed3-aa67-0e67e024cdc7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hpp_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3hpp_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_INDOLEt2pp" metaid="f09cdaf4-7b4c-4c97-b788-b1022184b24c" name="R_INDOLEt2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_000160 AND XFCFBP8418_000170 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000160 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_001680 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_000170 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_001690 AND XFCFBP8418_012340 ) OR ( XFCFBP8418_001680 AND XFCFBP8418_012340 AND XFCFBP8418_027900 ) OR ( XFCFBP8418_001690 AND XFCFBP8418_012340 AND XFCFBP8418_027910 ) OR ( XFCFBP8418_012340 AND XFCFBP8418_027900 AND XFCFBP8418_027910 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f09cdaf4-7b4c-4c97-b788-b1022184b24c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000160"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000170"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001680"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027900"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001690"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012340"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_indole_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_indole_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAabcpp" metaid="_1463c0d7-56a1-436e-9e50-55a7b363bff0" name="D_alanyl_D_alanine__DalaDala__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1463c0d7-56a1-436e-9e50-55a7b363bff0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4SR" metaid="a39e83c4-8130-4285-a95c-5019026fba5d" name="R_S4FE4SR" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a39e83c4-8130-4285-a95c-5019026fba5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fadh2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_2fe2s2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SLCYSS" metaid="f39f7141-fb0d-4e12-9e6b-855ed0a8b96a" name="R_SLCYSS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f39f7141-fb0d-4e12-9e6b-855ed0a8b96a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tsul_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_scys_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Stex" metaid="_9a4a4643-63be-43f7-8b3a-6c7f06817bc9" name="Hydrogen_sulfide_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a4a4643-63be-43f7-8b3a-6c7f06817bc9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2s_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2s_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_S4FE4ST" metaid="_2a1716f0-15c5-4cc4-99a2-b839a2e051ed" name="R_S4FE4ST" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002930 AND XFCFBP8418_002940 AND XFCFBP8418_002950 AND XFCFBP8418_012150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2a1716f0-15c5-4cc4-99a2-b839a2e051ed"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002950"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002930"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_sufbcd_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4fe4s_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_sufbcd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TREtex" metaid="bbe09276-0f1b-463f-a7f8-af3a0e0888f4" name="trehalose_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bbe09276-0f1b-463f-a7f8-af3a0e0888f4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tre_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_tre_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ca2_e" metaid="_5cb9433a-1034-41dc-9665-2169a037d64e" name="R_EX_ca2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5cb9433a-1034-41dc-9665-2169a037d64e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ca2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS3XF" metaid="_0d0e9caf-e261-478c-aa35-a28ea1bbabe7" name="R_EDTXS3XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0d0e9caf-e261-478c-aa35-a28ea1bbabe7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA161abcpp" metaid="c05fbc20-f6ee-4d43-a4da-d019b0a17c45" name="phosphatidate_transport_via_ABC_system__n_C16_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c05fbc20-f6ee-4d43-a4da-d019b0a17c45"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR140" metaid="_3f7cf43a-bec4-4e63-bcc4-6321a02571c1" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3f7cf43a-bec4-4e63-bcc4-6321a02571c1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3omrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hmrsACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_12DGR180tipp" metaid="bdba66cf-d220-480a-884e-50c672f09150" name="R_12DGR180tipp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bdba66cf-d220-480a-884e-50c672f09150"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr180_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_12dgr180_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMPS2" metaid="_8fe6e735-7903-4534-8398-e8ee0a6624c6" name="GMP_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004770</p> + <p>SUBSYSTEM: Purine_biosynthesis</p> + <p>EC_NUMBER: 6.3.5.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8fe6e735-7903-4534-8398-e8ee0a6624c6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.5.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_xmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR141" metaid="_49728e10-3c78-43f6-a132-ea7cc9eb9fbb" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49728e10-3c78-43f6-a132-ea7cc9eb9fbb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocmrs7eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcmrs7eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL180t2pp" metaid="eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6" name="fatty_acid_CoA_ligase__octadecanoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#eb1f72a2-ac74-4a5c-b7bc-9b29c71d87f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdca_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_stcoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYAM5POr" metaid="_6a4ff0cf-2525-49ac-8234-77e07699f8b0" name="pyridoxamine_5__phosphate_oxidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004150</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.4.3.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6a4ff0cf-2525-49ac-8234-77e07699f8b0"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.3.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004150"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUabcpp" metaid="_8e7235ba-0cae-487d-9a6c-5324972d6fdf" name="L_glutamate_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007600</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8e7235ba-0cae-487d-9a6c-5324972d6fdf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007600"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT140" metaid="_28833569-f07f-40e5-b678-fa48db25b28a" name="R_G3PAT140" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28833569-f07f-40e5-b678-fa48db25b28a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_myrsACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1tdecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SO3tex" metaid="_18616028-27c7-4c6b-af75-6cc5f4b1bf92" name="R_SO3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18616028-27c7-4c6b-af75-6cc5f4b1bf92"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_so3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_so3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT141" metaid="_0ecee537-dc8c-47f3-83c2-37fde71aca86" name="R_G3PAT141" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0ecee537-dc8c-47f3-83c2-37fde71aca86"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_tdeACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1tdec7eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_zn2_e" metaid="_4159c7ec-d404-4f29-8f77-4aeb035a94d3" name="R_EX_zn2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4159c7ec-d404-4f29-8f77-4aeb035a94d3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_zn2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICITt_kt" metaid="f31ef274-0ba9-42bf-8ec3-36b15d0f53ae" name="R_ICITt_kt" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025570</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f31ef274-0ba9-42bf-8ec3-36b15d0f53ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_icit_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS161pp" metaid="_330389ae-5902-43a7-bbb8-8539ca5d20f6" name="cardiolipin_synthase__periplasmic__n_C16_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_330389ae-5902-43a7-bbb8-8539ca5d20f6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn161_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2Otpp" metaid="_428d2359-fbda-446b-968a-347363e63c46" name="H2O_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_428d2359-fbda-446b-968a-347363e63c46"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYOX3" metaid="f55a5957-c961-408b-8b81-cefe28454487" name="R_GLYOX3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023680</p> + <p>SUBSYSTEM: Methylglyoxal_Metabolism</p> + <p>EC_NUMBER: 4.2.1.130</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f55a5957-c961-408b-8b81-cefe28454487"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.130"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_mthgxl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_lac_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_mg2_e" metaid="_7aad2af7-c5ef-42cf-b7dc-a845bf767d19" name="R_EX_mg2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7aad2af7-c5ef-42cf-b7dc-a845bf767d19"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_mg2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHGLYH" metaid="_9db97772-9661-4bce-9fe2-80cb8f3ee38f" name="R_DHGLYH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9db97772-9661-4bce-9fe2-80cb8f3ee38f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhgly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glx_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DB4PS" metaid="_421cf543-364a-4062-846b-f8f45f1a69a1" name="3_4_Dihydroxy_2_butanone_4_phosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009770</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.99.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_421cf543-364a-4062-846b-f8f45f1a69a1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.99.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009770"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ru5p_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP2App" metaid="_80658f59-ff34-4f09-b691-7484e8d693a4" name="murein_L_D_carboxypeptidase__murein5p5p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_80658f59-ff34-4f09-b691-7484e8d693a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5p5p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein5p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_alaala_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACACT1r" metaid="_87eb8bca-e417-4d10-8773-fb67586b7b3c" name="acetyl_CoA_C_acetyltransferase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87eb8bca-e417-4d10-8773-fb67586b7b3c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_aacoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP181pp" metaid="_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_27e14e08-7e2a-4bd7-b2c1-f25770fdc7b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUpts2" metaid="_49070d4c-f0be-4db8-8494-ed3d451df624" name="R_FRUpts2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_49070d4c-f0be-4db8-8494-ed3d451df624"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACHBS" metaid="_789c92ae-6b7b-4d83-ad40-4db45c2628ad" name="2_aceto_2_hydroxybutanoate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017900 AND XFCFBP8418_017910</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.2.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_789c92ae-6b7b-4d83-ad40-4db45c2628ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017910"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ahbut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CHTNABCt" metaid="_66ab3ddb-b37e-4479-a284-4e4856416781" name="R_CHTNABCt" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_66ab3ddb-b37e-4479-a284-4e4856416781"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_chtbs_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chtbs_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA120abcpp" metaid="e5726ea6-018f-4fa7-a709-2a4af8810ec5" name="phosphatidate_transport_via_ABC_system__n_C12_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e5726ea6-018f-4fa7-a709-2a4af8810ec5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa120_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa120_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISDr" metaid="_2d6e0f6b-14f9-4471-895d-0846b763cb9f" name="histidase_r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 4.3.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d6e0f6b-14f9-4471-895d-0846b763cb9f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_urcan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM3Pt2pp" metaid="_18440f86-dad4-41f8-8cfb-e015c27965aa" name="GlcNAc_anhMurNAc_tripeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_18440f86-dad4-41f8-8cfb-e015c27965aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_anhgm3p_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ANPRT" metaid="e154ca2e-3890-47e1-aea1-87fc24c96233" name="anthranilate_phosphoribosyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026730</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.4.2.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e154ca2e-3890-47e1-aea1-87fc24c96233"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026730"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_anth_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pran_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL3" metaid="_28ebcd3c-2de8-4221-9952-56d90ca3e156" name="R_cysteine_synthase__Selenide_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_006490 ) OR ( XFCFBP8418_010590 ) OR ( XFCFBP8418_010980 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_28ebcd3c-2de8-4221-9952-56d90ca3e156"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010980"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006490"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_selcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHSERL2" metaid="_1e0210a1-ddb2-4251-99e6-242396b57ff1" name="R_AHSERL2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 2.5.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e0210a1-ddb2-4251-99e6-242396b57ff1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_achms_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G2PP" metaid="_889da4e8-8566-4f3f-acb8-97291ae9294b" name="glycerol_2_phosphate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005240</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 3.1.3.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_889da4e8-8566-4f3f-acb8-97291ae9294b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/ 3.1.3.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc2p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHEMEAS" metaid="_4dff57e7-ed27-4653-9ce4-88dfebdec7d8" name="putative_hemeA_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003990</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4dff57e7-ed27-4653-9ce4-88dfebdec7d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003990"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hemeO_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hemeA_1_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_fe2_e" metaid="ff3238a4-c949-47c0-91fd-b6300ab90ff7" name="R_EX_fe2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ff3238a4-c949-47c0-91fd-b6300ab90ff7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_fe2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR120" metaid="_73a75cd3-61a7-4f57-9e50-0270d6928984" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73a75cd3-61a7-4f57-9e50-0270d6928984"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3oddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FTHFD" metaid="_97dbb6ec-f60d-41d3-9872-a30786df7ee9" name="formyltetrahydrofolate_deformylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017820</p> + <p>SUBSYSTEM: Folate_Metabolism</p> + <p>EC_NUMBER: 3.5.1.10</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97dbb6ec-f60d-41d3-9872-a30786df7ee9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.10"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_10fthf_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thf_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR121" metaid="_94014400-7692-4e52-a4cd-e4a5ede8c869" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C12_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94014400-7692-4e52-a4cd-e4a5ede8c869"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ocddec5eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcddec5eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SUCCt3pp" metaid="_11a2ab15-ec29-4b32-a8f2-63b22bb92ef7" name="R_SUCCt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11a2ab15-ec29-4b32-a8f2-63b22bb92ef7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_succ_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_succ_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA141" metaid="_8f1551cd-700d-4fa8-a5ac-06562bd1596f" name="Phosphatidylglycerol_synthase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8f1551cd-700d-4fa8-a5ac-06562bd1596f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdec7eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HIStex" metaid="d880ccde-0889-4968-9fb8-f43fb3d638f2" name="L_histidine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d880ccde-0889-4968-9fb8-f43fb3d638f2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA140" metaid="_0c38e552-5295-476b-b889-e73a205647b9" name="Phosphatidylglycerol_synthase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0c38e552-5295-476b-b889-e73a205647b9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdtdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSS1XF" metaid="faf631a7-983a-4d80-8094-afc7f95450db" name="R_LPSS1XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#faf631a7-983a-4d80-8094-afc7f95450db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="4"/> + <speciesReference constant="true" species="M_udpgalur_c" stoichiometry="53"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_dtdprmn_c" stoichiometry="19"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" 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rdf:resource="http://identifiers.org/ec-code/4.2.1.44"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ins_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkdepiins_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAL181t2pp" metaid="_4e19d812-c78a-431b-a118-69204652bfc4" name="fatty_acid_CoA_ligase__octadecenoate_transport_via_vectoral_Co_A_coupling_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025950</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.2.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4e19d812-c78a-431b-a118-69204652bfc4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ocdcea_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_odecoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPTHpp" metaid="cc7759f9-512e-4135-9b99-a3c70d664f0c" name="R_PPTHpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Nucleotides_degradation</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc7759f9-512e-4135-9b99-a3c70d664f0c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ppt_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSb" metaid="e3ead820-9549-47da-8f2e-b7b2d114056b" name="riboflavin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009760</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e3ead820-9549-47da-8f2e-b7b2d114056b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dmlz_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ribflv_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_ni2_e" metaid="e41c8663-235b-4f95-b953-a39c06455791" name="R_EX_ni2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e41c8663-235b-4f95-b953-a39c06455791"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MECDPS" metaid="_7bbec3fd-1e0b-4758-95bf-4186e227c611" name="2_C_methyl_D_erythritol_2_4_cyclodiphosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022190</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.6.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7bbec3fd-1e0b-4758-95bf-4186e227c611"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.6.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022190"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2p4c2me_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2mecdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OXOGAH" metaid="_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2" name="R_OXOGAH" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005030</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: 3.5.1.111</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_148cbb5c-87ce-48fd-80c2-b6eb893a5bc2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.1.111"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005030"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ogm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_6PDDGLUCA" metaid="aabd4ea8-d600-4f18-98d7-23aadf0eab7f" name="6_phospho_5_dehydro_2_deoxy_D_gluconate_aldolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.1.2.29</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aabd4ea8-d600-4f18-98d7-23aadf0eab7f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.29"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6pddgluc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_msa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLPNS181pp" metaid="_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d" name="cardiolipin_synthase__periplasmic__n_C18_1_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_023020</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5aebb49f-ce41-48b5-abac-a2d8f4ec0c5d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_023020"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pg181_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_clpn181_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMBS" metaid="_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8" name="hydroxymethylbilane_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018480</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.61</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_464f1d0a-4d4a-4d95-95d5-4d7134b70ca8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.61"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppbng_c" stoichiometry="4"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hmbil_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="4"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RBFSa" metaid="aefd8b19-116a-4449-8353-ad4f3ae9953a" name="riboflavin_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009780</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aefd8b19-116a-4449-8353-ad4f3ae9953a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009780"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_db4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4r5au_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dmlz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2tpp" metaid="_6e01cc85-1914-4f02-916d-8d6a5976fbb8" name="copper_transport_in_via_permease__no_H__" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6e01cc85-1914-4f02-916d-8d6a5976fbb8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LIPAabcpp" metaid="_9ca89924-0cf9-4d37-98d9-9597dc5d2f52" name="R_LIPAabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9ca89924-0cf9-4d37-98d9-9597dc5d2f52"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_kdo2lipidA_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipidA_XF_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PAPSR2" metaid="_94d14f04-db64-4886-9e29-e7c1d808685f" name="R_PAPSR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_002720 AND XFCFBP8418_012410 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_013020 ) OR ( XFCFBP8418_002720 AND XFCFBP8418_021660 ) OR ( or )</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_94d14f04-db64-4886-9e29-e7c1d808685f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012410"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021660"/> + </fbc:and> + <fbc:geneProductRef fbc:geneProduct="or"/> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002720"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013020"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_grxrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_paps_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pap_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_grxox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HXPRT" metaid="e06109e7-8772-41b8-97c4-aad71904ef31" name="hypoxanthine_phosphoribosyltransferase__Hypoxanthine_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021340</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.4.2.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e06109e7-8772-41b8-97c4-aad71904ef31"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hxan_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_prpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_imp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MTAP" metaid="_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a" name="R_MTAP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021330</p> + <p>SUBSYSTEM: Cysteine_and_methionine_metabolism</p> + <p>EC_NUMBER: 2.4.2.28</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a4a1688-0e11-4ed9-96ac-fb9352ef8b1a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.4.2.28"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021330"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5mta_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ade_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_5mdr1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGPP161pp" metaid="ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788" name="phosphatidylglycerol_phosphate_phosphatase__periplasm__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026710</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 3.1.3.27</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ebb9f9f4-9f9d-4cbf-9dd9-d70d2bad7788"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.27"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pgp161_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pg161_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OMPHHX" metaid="d1515964-e28b-41f8-9aaf-420a0992a400" name="2_octaprenyl_6_methoxyphenol_hydroxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010930</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d1515964-e28b-41f8-9aaf-420a0992a400"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010930"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="0.5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ombzl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDD" metaid="_669cb284-2f5e-4613-bf55-8d2e43585a6b" name="6_phosphogluconate_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024710</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 4.2.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_669cb284-2f5e-4613-bf55-8d2e43585a6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FRUptspp" metaid="_3b1cf144-0566-4f11-a09e-1c5e373c4a7a" name="D_fructose_transport_via_PEP_Pyr_PTS__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b1cf144-0566-4f11-a09e-1c5e373c4a7a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_fru_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f1p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDA" metaid="c0c41082-29b9-4aac-8e49-b75631a23d96" name="2_dehydro_3_deoxy_phosphogluconate_aldolase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 4.1.2.14</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c0c41082-29b9-4aac-8e49-b75631a23d96"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.14"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AGM4Pt2pp" metaid="cd579a5d-365c-4fdc-8ab1-8c1302bed8f1" name="GlcNAc_anhMurNAc_tetrapeptide_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015550</p> + <p>SUBSYSTEM: Murein_Recycling</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cd579a5d-365c-4fdc-8ab1-8c1302bed8f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015550"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_anhgm4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_anhgm4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PROT_LesA_BioS" metaid="cbdde19f-0825-4050-8f2c-5a4159aa0680" name="R_PROT_LesA_BioS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011400</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cbdde19f-0825-4050-8f2c-5a4159aa0680"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011400"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asptrna_c" stoichiometry="23"/> + <speciesReference constant="true" species="M_glutrna_c" stoichiometry="17"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_asntrna_c" stoichiometry="37"/> + <speciesReference constant="true" species="M_phetrna_c" stoichiometry="22"/> + <speciesReference constant="true" species="M_glytrna_c" stoichiometry="59"/> + <speciesReference constant="true" species="M_glntrna_c" stoichiometry="34"/> + <speciesReference constant="true" species="M_cystrna_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_trptrna_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_protrna_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_valtrna_c" stoichiometry="25"/> + <speciesReference constant="true" species="M_sertrna_c" stoichiometry="47"/> + <speciesReference constant="true" species="M_argtrna_c" stoichiometry="21"/> + <speciesReference constant="true" species="M_thrtrna_c" stoichiometry="63"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_alatrna_c" stoichiometry="60"/> + <speciesReference constant="true" species="M_iletrna_c" stoichiometry="29"/> + <speciesReference constant="true" species="M_lystrna_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="58"/> + <speciesReference constant="true" species="M_mettrna_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_tyrtrna_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_histrna_c" stoichiometry="14"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_trnahis_c" stoichiometry="14"/> + <speciesReference constant="true" species="M_LesA_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="29"/> + <speciesReference constant="true" species="M_trnaarg_c" stoichiometry="21"/> + <speciesReference constant="true" species="M_trnathr_c" stoichiometry="63"/> + <speciesReference constant="true" species="M_trnaala_c" stoichiometry="60"/> + <speciesReference constant="true" species="M_trnapro_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_trnamet_c" stoichiometry="7"/> + <speciesReference constant="true" species="M_trnaser_c" stoichiometry="47"/> + <speciesReference constant="true" species="M_trnacys_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_trnaasp_c" stoichiometry="23"/> + <speciesReference constant="true" species="M_trnatrp_c" stoichiometry="11"/> + <speciesReference constant="true" species="M_trnaasn_c" stoichiometry="37"/> + <speciesReference constant="true" species="M_trnagln_c" stoichiometry="34"/> + <speciesReference constant="true" species="M_trnaphe_c" stoichiometry="22"/> + <speciesReference constant="true" species="M_trnatyr_c" stoichiometry="28"/> + <speciesReference constant="true" species="M_trnagly_c" stoichiometry="59"/> + <speciesReference constant="true" species="M_trnaval_c" stoichiometry="25"/> + <speciesReference constant="true" species="M_trnaglu_c" stoichiometry="17"/> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="58"/> + <speciesReference constant="true" species="M_trnalys_c" stoichiometry="15"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1997.72"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1997.72"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AMPTASECG" metaid="_9c0dc877-c529-45e2-ab06-fabb4fc1ce55" name="alanyl_aminopeptidase__cys_gly_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002800</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 3.4.11.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9c0dc877-c529-45e2-ab06-fabb4fc1ce55"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.11.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cgly_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NH4tpp" metaid="f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7" name="ammonia_reversible_transport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_017690</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f64fe1cf-9c3a-49ec-b329-1981fc7ebfe7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_017690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nh4_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHCHD2" metaid="_19647eb7-b93d-447a-88e3-c64aa879bebd" name="R_SHCHD2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010970</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.1.76</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_19647eb7-b93d-447a-88e3-c64aa879bebd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.76"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010970"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dscl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_scl_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CU2_bd_CopA" metaid="_14797287-fd1a-4dfc-b300-9daffa59e830" name="Copper_sequestration_by_cop_system" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015250</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_14797287-fd1a-4dfc-b300-9daffa59e830"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cu2_p" stoichiometry="11"/> + <speciesReference constant="true" species="M_CopA_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_11cu2s_CopA_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THBPTD" metaid="_8622fea6-35d5-4e81-9aef-5a66f3939348" name="R_THBPTD" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012500</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.96</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8622fea6-35d5-4e81-9aef-5a66f3939348"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.96"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_thbpt4acam_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhbpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYt2pp" metaid="_7f478a86-dcba-4b43-bdfa-bf36dbd733b1" name="R_GLYt2pp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7f478a86-dcba-4b43-bdfa-bf36dbd733b1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gly_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LPSabctpp" metaid="_458e980d-70fa-448b-ac26-8d00fb518e9a" name="Oantigen_core_kdo_lipidA_Ralstonia_solanacearum_specific_LPS_transport_via_ABC_system_periplasm_to_extracellular_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_458e980d-70fa-448b-ac26-8d00fb518e9a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_OLPS_XF_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EDTXS1XF" metaid="cfeb2f99-37cd-4276-ac54-5a875d5bdb62" name="R_EDTXS1XF" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004060 ) OR ( XFCFBP8418_015020 )</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.3.1.-</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cfeb2f99-37cd-4276-ac54-5a875d5bdb62"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.-"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004060"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015020"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3hddecACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_kdo2lipid4_XF_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_kdo2lipid4HL_XF_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SERAT" metaid="f5fb0f47-8e33-4507-9a9b-1ff077874e4e" name="serine_O_acetyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 2.3.1.30</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f5fb0f47-8e33-4507-9a9b-1ff077874e4e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.30"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ser_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acser_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPND" metaid="ac05b5bb-aec3-4b65-899f-cd0db43b95f1" name="prephenate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021200</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.3.1.12</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ac05b5bb-aec3-4b65-899f-cd0db43b95f1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.12"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021200"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pphn_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GK1" metaid="_64b44538-0b98-4e14-9b37-8a43ee722e14" name="guanylate_kinase__GMP_ATP_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002650</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 2.7.4.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_64b44538-0b98-4e14-9b37-8a43ee722e14"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.4.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUabcpp" metaid="_2f7463c0-9137-4d02-a616-6b7f9216f12f" name="L_leucine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004750</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f7463c0-9137-4d02-a616-6b7f9216f12f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR100" metaid="_7c30b382-8242-4ab9-bd3e-8a33ee49fe78" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C10_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c30b382-8242-4ab9-bd3e-8a33ee49fe78"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3odecACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hdecACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA120" metaid="dd342e79-834f-45bb-b41c-ea27503d1749" name="Phosphatidylglycerol_synthase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#dd342e79-834f-45bb-b41c-ea27503d1749"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdddecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT181" metaid="e2a02f7a-7ed8-4efb-a6f8-c77334a40727" name="R_G3PAT181" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e2a02f7a-7ed8-4efb-a6f8-c77334a40727"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_octeACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1odec11eg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDP" metaid="a30b4cb1-c39f-485d-b604-4468b4e83d36" name="thiamin_pyrophosphatase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003250</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.6.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a30b4cb1-c39f-485d-b604-4468b4e83d36"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003250"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thmmp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FE2abcpp" metaid="ee7de55c-cb84-47e5-97b0-5eb5fa96d008" name="iron__II__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009910</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee7de55c-cb84-47e5-97b0-5eb5fa96d008"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fe2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ABUTt2pp" metaid="_0873f427-e010-46ae-a840-180cb283a6e9" name="4_aminobutyrate_transport_in_via_proton_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0873f427-e010-46ae-a840-180cb283a6e9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4abut_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCL" metaid="_421e0e7b-eb65-4739-b2eb-75149316d48e" name="R_ADCL" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014810</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.3.38</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_421e0e7b-eb65-4739-b2eb-75149316d48e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.3.38"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4abz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MSO3tex" metaid="bd3c6ae0-56d8-4f23-987a-2cb585fdf959" name="methanesulfonate_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_007680 ) OR ( XFCFBP8418_009840 )</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#bd3c6ae0-56d8-4f23-987a-2cb585fdf959"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009840"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mso3_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mso3_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDGLK" metaid="_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76" name="2_dehydro_3_deoxygluconokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018640</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 2.7.1.45</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5fbef3c5-b93b-4d9c-984d-f6e1c4771e76"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.45"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2ddglcn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ddg6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PStex" metaid="_05abaed6-9268-45a3-a535-ae3145a6cf90" name="glycerophosphserine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05abaed6-9268-45a3-a535-ae3145a6cf90"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3ps_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DNMPPA" metaid="d68c6357-31ae-4f64-b842-d623ff70f374" name="R_DNMPPA" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d68c6357-31ae-4f64-b842-d623ff70f374"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhpmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dhnpt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OCTDPS" metaid="_7b300b6d-9a30-4887-843a-eaf6b31bb960" name="Octaprenyl_pyrophosphate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003680</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.5.1.90</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7b300b6d-9a30-4887-843a-eaf6b31bb960"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.90"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_frdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ipdp_c" stoichiometry="5"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="5"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PAT180" metaid="_38af430f-3a01-4373-8d04-5804967f5bee" name="R_G3PAT180" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005900 AND XFCFBP8418_024990</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.3.1.15</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_38af430f-3a01-4373-8d04-5804967f5bee"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.3.1.15"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024990"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005900"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ocdcaACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_1odecg3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADCS" metaid="ffa3c12c-7325-455c-98a8-f7a8129c38bf" name="4_amino_4_deoxychorismate_synthase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026740 AND XFCFBP8418_026750</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.85</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ffa3c12c-7325-455c-98a8-f7a8129c38bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.85"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026740"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_chor_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4adcho_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CAT" metaid="fa3bfb33-f625-44fa-871f-05e8405fde85" name="catalase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020430</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.6</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fa3bfb33-f625-44fa-871f-05e8405fde85"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.6"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MDDCP1pp" metaid="_6de2d860-2eac-437b-98f7-61ce1498d5ea" name="murein_D_D_carboxypeptidase__murein5px4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_018620 ) OR ( XFCFBP8418_020420 )</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.16.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6de2d860-2eac-437b-98f7-61ce1498d5ea"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.16.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020420"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018620"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein5px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4px4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PIabcpp" metaid="_9b5da76b-7854-44f0-bb9b-bd39c77a57b5" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b5da76b-7854-44f0-bb9b-bd39c77a57b5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g3pi_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_THRA2r" metaid="_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5" name="R_THRA2r" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.1.2.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_20397b20-c6a8-4d60-ab1f-8c57d84dbfd5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.2.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_athr_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_acald_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA140abcpp" metaid="_73451555-2031-45ca-8d40-f38b9705fd4c" name="phosphatidate_transport_via_ABC_system__n_C14_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73451555-2031-45ca-8d40-f38b9705fd4c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa140_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NADPPPS" metaid="_8642b33f-f57f-4f89-bf54-a52a7bba4577" name="R_NADPPPS" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8642b33f-f57f-4f89-bf54-a52a7bba4577"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GF6PTAr" metaid="_55795965-f6a5-4dfd-9b76-36e12c5fb995" name="Glutamine_fructose_6_phosphate_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015350</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.6.1.16</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_55795965-f6a5-4dfd-9b76-36e12c5fb995"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.16"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015350"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PE181abcpp" metaid="d46ef64c-487c-497d-8283-03e2e7a2d0ac" name="phosphatidylethanolamine_transport_via_ABC_system__n_C18_1__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d46ef64c-487c-497d-8283-03e2e7a2d0ac"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pe181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pe181_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GALU" metaid="_544cd7d9-e0e5-4a34-b011-adef2e62a0c5" name="UTP_glucose_1_phosphate_uridylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004800</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_544cd7d9-e0e5-4a34-b011-adef2e62a0c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004800"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_utp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g1p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OHPHM" metaid="_4a26de74-3974-41fa-b3f6-bcec426c17ad" name="2_octaprenyl_6_hydroxyphenol_methylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005180</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.1.1.222</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_4a26de74-3974-41fa-b3f6-bcec426c17ad"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.1.1.222"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_amet_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2ohph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2omph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_orn_e" metaid="_088ee4bb-574c-4b38-a9c4-209816251311" name="R_EX_orn_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_088ee4bb-574c-4b38-a9c4-209816251311"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_orn_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GMAND" metaid="de5417ed-2086-4f4b-9e9f-6c417ab0def2" name="GDP_D_mannose_dehydratase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006460</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.2.1.47</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#de5417ed-2086-4f4b-9e9f-6c417ab0def2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.47"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006460"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gdpmann_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gdpddman_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_asp_L_e" metaid="_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71" name="R_EX_asp_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76bf29d6-ef42-4e37-92ff-f6a1d3c6af71"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PFK" metaid="_06084ea6-8cc7-45f2-a738-c1a406c8b1c5" name="phosphofructokinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026080</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_06084ea6-8cc7-45f2-a738-c1a406c8b1c5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fdp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RZ5PP" metaid="ee88117f-9d1b-4189-a13b-519ac6453e68" name="alpha_ribazole_5_phosphate_phosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016540</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.73</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ee88117f-9d1b-4189-a13b-519ac6453e68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.73"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5prdmbz_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_rdmbzi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SHKK" metaid="_2d9d7940-36f9-4f52-b34a-728428042344" name="R_SHKK" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004160</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.7.1.71</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2d9d7940-36f9-4f52-b34a-728428042344"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.71"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004160"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_skm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ILETRS" metaid="_7a91f907-41a1-4510-9097-94a0db7c8bd8" name="Isoleucyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004680</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7a91f907-41a1-4510-9097-94a0db7c8bd8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004680"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnaile_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ile_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_iletrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_OAADC" metaid="_76151d46-e9d6-4024-8dab-ff726b55cd2d" name="oxaloacetate_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024720</p> + <p>SUBSYSTEM: Pyruvate_Metabolism</p> + <p>EC_NUMBER: 4.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76151d46-e9d6-4024-8dab-ff726b55cd2d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024720"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA180" metaid="_111dd9ad-2aa2-4381-b911-a711ed7d11c7" name="Phosphatidylglycerol_synthase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_111dd9ad-2aa2-4381-b911-a711ed7d11c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdodecg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp180_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CPPPGO" metaid="d2e24363-f133-494a-a677-1b18d8215636" name="coproporphyrinogen_oxidase__O2_required_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.3.3.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2e24363-f133-494a-a677-1b18d8215636"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.3.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_cpppg3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pppg9_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR3" metaid="_107a69f9-5d98-4b62-a714-dc37ee6216be" name="R_SELGTHR3" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_107a69f9-5d98-4b62-a714-dc37ee6216be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_seln_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALATA_L2" metaid="_45b027a6-2c7d-47ef-8c0d-f5acf5c34a3d" name="alanine_transaminase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009820</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_45b027a6-2c7d-47ef-8c0d-f5acf5c34a3d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pydx5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyam5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SELGTHR2" metaid="_30c97ae2-cdd1-4bbb-8055-d3664764f4a4" name="R_SELGTHR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_30c97ae2-cdd1-4bbb-8055-d3664764f4a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dgslnt_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gslnt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALAALAr" metaid="_24c7b076-cdab-4831-b204-b476262b1791" name="D_alanine_D_alanine_ligase__reversible_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011240</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_24c7b076-cdab-4831-b204-b476262b1791"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_alaala_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTA" metaid="_05f67c70-fa33-411d-9a41-34703156a6c2" name="leucine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_05f67c70-fa33-411d-9a41-34703156a6c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHORD2" metaid="_3ad623d7-86a9-404a-9bd2-2cf74d4619f3" name="dihydoorotic_acid_dehydrogenase__quinone8_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012210</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 1.3.5.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3ad623d7-86a9-404a-9bd2-2cf74d4619f3"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.5.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012210"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_q8_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhor_S_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_q8h2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_orot_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DALAt2pp" metaid="_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231" name="D_alanine_transport_in_via_proton_symport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1ff9f0b8-ce7a-42a1-90f1-aeae01fbd231"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK120" metaid="_11033452-cc4c-4650-a396-3d597ed06cd1" name="diacylglycerol_kinase__n_C12_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: 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species="M_pa120_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MLDCP1Bpp" metaid="_5dbd4070-184a-4621-b940-68cfc8ce8556" name="murein_L_D_carboxypeptidase__murein4p4p___periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5dbd4070-184a-4621-b940-68cfc8ce8556"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_murein4p4p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_murein4p3p_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ala_D_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOBDtex" metaid="_9770389f-8fa3-4b15-ba1d-935bf3d71dd5" name="molybdate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9770389f-8fa3-4b15-ba1d-935bf3d71dd5"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mobd_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_mobd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_h_e" metaid="_6d564f4a-c974-441f-ae92-d03171c99d4d" name="R_EX_h_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6d564f4a-c974-441f-ae92-d03171c99d4d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA181" metaid="_11a1a22d-37be-440a-a711-ec0fe67162bb" name="Phosphatidylglycerol_synthase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_11a1a22d-37be-440a-a711-ec0fe67162bb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdodec11eg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pgp181_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR80x" metaid="_72f99711-8e3b-4cc9-9323-c8aad8721e38" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C8_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_72f99711-8e3b-4cc9-9323-c8aad8721e38"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_toct2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ocACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AHC" metaid="_0b7de0b5-f401-4d97-8a9f-8eb9522dddab" name="adenosylhomocysteinase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024950</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 3.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0b7de0b5-f401-4d97-8a9f-8eb9522dddab"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024950"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ahcys_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hcys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adn_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cu2_e" metaid="b7507095-bd33-4161-93c4-eaca0ae599dd" name="R_EX_cu2_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b7507095-bd33-4161-93c4-eaca0ae599dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cu2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PA160abcpp" metaid="_9b0428b8-556c-4454-8bc3-b94c8ff0ea25" name="phosphatidate_transport_via_ABC_system__n_C16_0__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004550 ) OR ( XFCFBP8418_024530 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b0428b8-556c-4454-8bc3-b94c8ff0ea25"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024530"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa160_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DTARTD" metaid="_0fb060a3-26e6-4409-8280-0c3cefaeaa6e" name="R_DTARTD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_016890</p> + <p>SUBSYSTEM: Alternate_Carbon_Metabolism</p> + <p>EC_NUMBER: 4.2.1.81</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fb060a3-26e6-4409-8280-0c3cefaeaa6e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.81"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016890"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tartr_D_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_oaa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK140" metaid="cc7f6070-3430-47ce-93f0-9c6d4b2f457b" name="diacylglycerol_kinase__n_C14_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#cc7f6070-3430-47ce-93f0-9c6d4b2f457b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa140_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GAMptspp" metaid="e0d5d1a3-ddc8-41b4-856f-377ddf310888" name="R_GAMptspp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_003570 AND XFCFBP8418_003580</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0d5d1a3-ddc8-41b4-856f-377ddf310888"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003580"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003570"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gam_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gam6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_cl_e" metaid="f8f49550-bbf1-40a3-a701-6d7344888a6b" name="R_EX_cl_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8f49550-bbf1-40a3-a701-6d7344888a6b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr2" metaid="f8884270-c678-4594-b521-5da61fd3b43f" name="R_ICDHyr2" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_012420 ) OR ( XFCFBP8418_013290 )</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f8884270-c678-4594-b521-5da61fd3b43f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_icit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ICDHyr1" metaid="_3a6f37a3-e30d-4a3b-8d44-13b859c82de6" name="R_ICDHyr1" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_012420 AND XFCFBP8418_013290</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: 1.1.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3a6f37a3-e30d-4a3b-8d44-13b859c82de6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013290"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_012420"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_osucc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_SULRi" metaid="_9f7fedea-e778-446b-bc21-34963625af49" name="sulfite_reductase__NADPH2_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002700 AND XFCFBP8418_002710</p> + <p>SUBSYSTEM: Cysteine_Metabolism</p> + <p>EC_NUMBER: 1.8.1.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9f7fedea-e778-446b-bc21-34963625af49"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.8.1.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002710"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002700"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="5"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_so3_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="3"/> + <speciesReference constant="true" species="M_h2s_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GUAtex" metaid="d24cd184-9dfb-47d8-b10d-348f4fd24257" name="R_GUAtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d24cd184-9dfb-47d8-b10d-348f4fd24257"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gua_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gua_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AP4AHr" metaid="_8d72706a-895d-42d5-a37e-40cccdc2ab26" name="Ap4A_hydrolase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019500</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.41</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_8d72706a-895d-42d5-a37e-40cccdc2ab26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.41"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019500"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ap4a_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_adp_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TPI" metaid="_125ccb2b-525a-42f5-81b7-02d29f5fb24f" name="triose_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025760</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.3.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_125ccb2b-525a-42f5-81b7-02d29f5fb24f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025760"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_gal_e" metaid="ba58e059-2307-4b18-8399-109a35fb43ae" name="R_EX_gal_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba58e059-2307-4b18-8399-109a35fb43ae"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_gal_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G1SAT" metaid="_9d7a712e-8036-4241-b97e-2a49121b73fb" name="glutamate_1_semialdehyde_aminotransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019220</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 5.4.3.8</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d7a712e-8036-4241-b97e-2a49121b73fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.3.8"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glu1sa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5aop_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MALDt2_2pp" metaid="_9d80ccee-607d-48c9-8ca3-0257333fd2c2" name="R_MALDt2_2pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025480</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9d80ccee-607d-48c9-8ca3-0257333fd2c2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_mal_D_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_mal_D_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PSCVT" metaid="f2421df1-2a4a-40c2-91e7-b4b36d3cdb64" name="R_PSCVT" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021080</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.19</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f2421df1-2a4a-40c2-91e7-b4b36d3cdb64"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.19"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_skm5p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3psme_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK141" metaid="_97f73aaa-f158-4c0e-aec5-f92f1805f78f" name="diacylglycerol_kinase__n_C14_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_97f73aaa-f158-4c0e-aec5-f92f1805f78f"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pa141_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_his_L_e" metaid="_85b6e06f-04c1-444b-ad7e-ed6799502f98" name="R_EX_his_L_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_85b6e06f-04c1-444b-ad7e-ed6799502f98"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_his_L_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AIRC3" metaid="ecbfc67d-3b62-4c1b-9c28-271f7d2c6306" name="phosphoribosylaminoimidazole_carboxylase__mutase_rxn_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013040</p> + <p>SUBSYSTEM: Purine_and_Pyrimidine_Biosynthesis</p> + <p>EC_NUMBER: 5.44.99.18</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ecbfc67d-3b62-4c1b-9c28-271f7d2c6306"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.44.99.18"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013040"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_5aizc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_5caiz_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA160" metaid="e83a89d6-60a6-4fdf-af63-c21ef4f53c8b" name="Phosphatidylglycerol_synthase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e83a89d6-60a6-4fdf-af63-c21ef4f53c8b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cdpdhdecg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp160_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CLtex" metaid="_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991" name="chloride__Cl_1__transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_29c0101f-cf5a-4dbb-bfd3-56c9a20ff991"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cl_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cl_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGSA161" metaid="af2c3417-84b9-4d18-b71e-5b21a9c40fbd" name="Phosphatidylglycerol_synthase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019130</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.8.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#af2c3417-84b9-4d18-b71e-5b21a9c40fbd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.8.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019130"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc3p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cdpdhdec9eg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cmp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pgp161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ADPRDP" metaid="_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6" name="ADPribose_diphosphatase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015820</p> + <p>SUBSYSTEM: Nucleotide_Salvage_Pathway</p> + <p>EC_NUMBER: 3.6.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3dd0ab87-7f08-4cbc-b1eb-776e8b53e3d6"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adprib_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CITt3pp" metaid="_3b77a00f-04d5-425a-b636-33691ff010bf" name="R_CITt3pp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3b77a00f-04d5-425a-b636-33691ff010bf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cit_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_cit_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK160" metaid="e579cbe8-097c-441e-a6ee-baef4eade8aa" name="diacylglycerol_kinase__n_C16_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e579cbe8-097c-441e-a6ee-baef4eade8aa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_12dgr160_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa160_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGM" metaid="fdb69f82-0373-429f-807b-f88bbdc5decf" name="phosphoglycerate_mutase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016460 ) OR ( XFCFBP8418_016540 ) OR ( XFCFBP8418_027800 )</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.4.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#fdb69f82-0373-429f-807b-f88bbdc5decf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.4.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016460"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027800"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016540"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DAGK161" metaid="_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d" name="diacylglycerol_kinase__n_C16_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_021180</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 2.7.1.107</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_57b3c827-2fa6-4e81-bdb0-6de5f1ef6e6d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.107"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_021180"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_12dgr161_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pa161_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGL" metaid="_812b8f84-9415-4423-bf06-846d2009b538" name="6_phosphogluconolactonase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024700</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 3.1.1.31</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_812b8f84-9415-4423-bf06-846d2009b538"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.1.31"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024700"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_6pgl_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_6pgc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FLDR2" metaid="_2953c195-068f-432b-93b0-4f1799543fe8" name="R_FLDR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_016500 AND XFCFBP9418_023100 ) OR ( XFCFBP8418_027840 AND XFCFBP9418_023100 )</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2953c195-068f-432b-93b0-4f1799543fe8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_016500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> + </fbc:and> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_027840"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP9418_023100"/> + </fbc:and> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxso_c" stoichiometry="2"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_flxr_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGK" metaid="_949a5780-a027-4b9b-b6cc-7989c5178314" name="phosphoglycerate_kinase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_011060</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 2.7.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_949a5780-a027-4b9b-b6cc-7989c5178314"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_011060"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_13dpg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLCt2" metaid="_1faff6b2-1f14-4c76-802e-e8c49a977d16" name="R_GLCt2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1faff6b2-1f14-4c76-802e-e8c49a977d16"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + <speciesReference constant="true" species="M_glc_D_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glc_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PGI" metaid="_26382bd4-e92e-48aa-9edc-9d7820f1cb06" name="glucose_6_phosphate_isomerase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_026530</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 5.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_26382bd4-e92e-48aa-9edc-9d7820f1cb06"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/5.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_026530"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACALDtex" metaid="d2ea4b50-f902-4a7b-95c2-550da0ba9fa8" name="R_ACALDtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d2ea4b50-f902-4a7b-95c2-550da0ba9fa8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_acald_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_acald_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FMNAT" metaid="_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf" name="FMN_adenylyltransferase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_004690</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.7.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2bdf44c5-2cb6-4296-9c5d-5dac7b98b1cf"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.7.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004690"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_fmn_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DDPA" metaid="a2fb8836-002f-4c28-8bc6-8cf23e5bdac7" name="3_deoxy_D_arabino_heptulosonate_7_phosphate_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014390</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.5.1.54</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a2fb8836-002f-4c28-8bc6-8cf23e5bdac7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.54"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014390"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2dda7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSL" metaid="_73e88ab8-feb4-43b9-8bbf-485162c2718d" name="argininosuccinate_lyase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025240</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 4.3.2.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_73e88ab8-feb4-43b9-8bbf-485162c2718d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.2.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fum_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_arg_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PYRt2rtex" metaid="_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07" name="R_PYRt2rtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_068a01f8-c04d-4345-b5f5-d8bf4d8d4c07"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_pyr_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_pyr_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_QUINDH" metaid="aa2efde8-2998-4ec0-9559-7a9ca2a9663c" name="Quinate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006320</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.282</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#aa2efde8-2998-4ec0-9559-7a9ca2a9663c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.282"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006320"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_quin_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_3dhq_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HSDy" metaid="db1afa15-7d63-44d6-983a-300bb048428d" name="homoserine_dehydrogenase__NADPH_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020380</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 1.1.1.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#db1afa15-7d63-44d6-983a-300bb048428d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020380"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hom_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ARGSSr" metaid="_9a2533a8-f05d-4605-871e-87af7ee80f95" name="argininosuccinate_synthase__reversible" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025280</p> + <p>SUBSYSTEM: Arginine_and_Proline_Metabolism</p> + <p>EC_NUMBER: 6.3.4.5</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a2533a8-f05d-4605-871e-87af7ee80f95"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.4.5"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025280"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_citr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_argsuc_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR2" metaid="c375b01a-4888-4059-b1a1-e8c71408675b" name="R_TDSR2" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_006350</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c375b01a-4888-4059-b1a1-e8c71408675b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbgox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbgrd_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PTRCtex" metaid="_5db91d6a-04ad-40cb-b1b5-2848ea4e3112" name="putrescine_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5db91d6a-04ad-40cb-b1b5-2848ea4e3112"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ptrc_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ptrc_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EX_glyc_e" metaid="_303676b7-c2e0-4189-9634-db8aa9abc05b" name="R_EX_glyc_e" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Extracellular_exchange</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_303676b7-c2e0-4189-9634-db8aa9abc05b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants/> + <listOfProducts> + <speciesReference constant="true" species="M_glyc_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLUSy" metaid="_946e491d-30ef-4d22-a21c-f94daf2b1f67" name="glutamate_synthase__NADPH_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_013350 AND XFCFBP8418_013360</p> + <p>SUBSYSTEM: Glutamate_Metabolism_</p> + <p>EC_NUMBER: 1.4.1.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_946e491d-30ef-4d22-a21c-f94daf2b1f67"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.4.1.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013360"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013350"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gln_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TDSR1" metaid="f7f2d2f9-df08-44da-9732-c9e15a1a2499" name="thiol_disulfide_reductase__DsbC_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_003390 AND XFCFBP8418_006350</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f7f2d2f9-df08-44da-9732-c9e15a1a2499"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006350"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_003390"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_dsbcox_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdrd_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dsbcrd_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_dsbdox_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYC2Ptex" metaid="_6abfaec7-5d82-4094-807e-05351db886a4" name="sn_Glycerol_2_phosphate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6abfaec7-5d82-4094-807e-05351db886a4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyc2p_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glyc2p_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METtex" metaid="e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b" name="L_methionine_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0857c6d-dcd9-4cf5-b3eb-c3ee4d21708b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_met_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_met_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_LEUTRS" metaid="_01e8e603-05fa-4f85-aace-eada9cdc28e4" name="Leucyl_tRNA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_019710</p> + <p>SUBSYSTEM: tRNA_Charging</p> + <p>EC_NUMBER: 6.1.1.4</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_01e8e603-05fa-4f85-aace-eada9cdc28e4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.1.1.4"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019710"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_trnaleu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leu_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_leutrna_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MEOHtrpp" metaid="_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68" name="Methanol_reversible_transport_via_diffusion__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9a3cb379-45c8-4d8e-bd23-8f379fc7ff68"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_meoh_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_meoh_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MANtex" metaid="_96653a75-107b-4a14-bcf3-12e782efb8b2" name="R_MANtex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_96653a75-107b-4a14-bcf3-12e782efb8b2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_man_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_man_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX1abcpp" metaid="b96939fb-79ad-441c-a13b-77a4dea207dd" name="R_METSOX1abcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b96939fb-79ad-441c-a13b-77a4dea207dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_metsox_S_L_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_METSOX2tex" metaid="_5f779722-a885-4f0e-a40c-1f4eb862d134" name="R_METSOX2tex" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f779722-a885-4f0e-a40c-1f4eb862d134"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_metsox_R_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_metsox_R_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PEabcpp" metaid="c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79" name="sn_glycerol_3_phosphoethanolamine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c63ec343-9b0f-4bd1-acdd-4cf5c0d9da79"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pe_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3pe_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_EAR60x" metaid="f98904b1-2fec-4b9d-8d23-1ed5d71a8fff" name="enoyl__acyl_carrier_protein__reductase__NADH___n_C6_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010080</p> + <p>SUBSYSTEM: Glycerophospholipid_Metabolism</p> + <p>EC_NUMBER: 1.3.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f98904b1-2fec-4b9d-8d23-1ed5d71a8fff"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010080"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_thex2eACP_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hexACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3tex" metaid="_0fcc3404-73b7-408c-9516-cf5711a5b2d8" name="R_NI2t3tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_0fcc3404-73b7-408c-9516-cf5711a5b2d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_e" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_MOPG" metaid="_6c1b1e0c-1214-43dc-ae88-48c6e32c6574" name="R_MOPG" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: Spontaneous</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6c1b1e0c-1214-43dc-ae88-48c6e32c6574"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="Spontaneous"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3c4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_4mop_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ACS" metaid="f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b" name="acetyl_CoA_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020630</p> + <p>SUBSYSTEM: Pyruvate_Metabolism</p> + <p>EC_NUMBER: 6.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f82a531b-3cfb-4432-a2a9-fc2b1ea7a29b"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020630"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ac_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_amp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ppi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE60" metaid="f3b291e6-d971-4169-8526-c6cc47f9af28" name="R_FACOAE60" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#f3b291e6-d971-4169-8526-c6cc47f9af28"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxcoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_hxa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT2" metaid="a875eaae-aebe-409c-bfb2-26d163f234fb" name="transketolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a875eaae-aebe-409c-bfb2-26d163f234fb"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DHDPS" metaid="b5cb189a-d585-442f-bd55-649ff74e2a26" name="dihydrodipicolinate_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_009670</p> + <p>SUBSYSTEM: Threonine_and_Lysine_Metabolism</p> + <p>EC_NUMBER: 4.3.3.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b5cb189a-d585-442f-bd55-649ff74e2a26"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.3.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_009670"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_aspsa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_23dhdp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TKT1" metaid="e836e051-ab3f-4c80-bc79-1cc08254d046" name="transketolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000640</p> + <p>SUBSYSTEM: Pentose_Phosphate_Pathway</p> + <p>EC_NUMBER: 2.2.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e836e051-ab3f-4c80-bc79-1cc08254d046"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.2.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000640"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_xu5p_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_r5p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_s7p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PHETA1" metaid="_87ac1595-703b-4256-851b-cbf43c1556dd" name="phenylalanine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_014480</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.58</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87ac1595-703b-4256-851b-cbf43c1556dd"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.58"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phe_L_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_phpyr_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE100" metaid="_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c" name="R_FACOAE100" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_6b0eb87a-7795-4f00-b3ef-190b2a0ad83c"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dcacoa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dca_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_4PEPTabcpp" metaid="_3d8f4895-48d4-4116-bfd5-088e7038a524" name="tetrapeptide__LalaDgluMdapDala__transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004070 ) OR ( XFCFBP8418_004550 ) OR ( XFCFBP8418_007680 ) OR ( XFCFBP8418_010500 ) OR ( XFCFBP8418_013240 ) OR ( XFCFBP8418_019450 ) OR ( XFCFBP8418_022120 ) OR ( XFCFBP8418_024570 ) OR ( XFCFBP8418_024670 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_3d8f4895-48d4-4116-bfd5-088e7038a524"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010500"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_019450"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004070"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024570"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007680"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_013240"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022120"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004550"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_LalaDgluMdapDala_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HMPK1" metaid="ef3008e2-953d-4543-82a4-ec97725519db" name="hydroxymethylpyrimidine_kinase__ATP_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006340</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 2.7.1.49</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ef3008e2-953d-4543-82a4-ec97725519db"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.7.1.49"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006340"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ahmmp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4ampm_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_DKMPPD" metaid="ccd90c3a-41ed-419a-a0bb-2b355bea1754" name="R_DKMPPD" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Methionine_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ccd90c3a-41ed-419a-a0bb-2b355bea1754"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_o2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dkmpp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_for_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_2kmb_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_G3PSabcpp" metaid="e0e6c33a-04e0-41d4-83a0-8545aa8b6f66" name="sn_glycerol_3_phosphoserine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment AND XFCFBP8418_004930 AND XFCFBP8418_004940 AND XFCFBP8418_024670</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#e0e6c33a-04e0-41d4-83a0-8545aa8b6f66"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024670"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004930"/> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3ps_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_g3ps_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HDCAtex" metaid="_5ccf13a2-dbfe-4669-80a1-7789fd33b591" name="Hexadecanoate_transport_via_diffusion__extracellular_to_periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_024810</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5ccf13a2-dbfe-4669-80a1-7789fd33b591"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_024810"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_hdca_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_hdca_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_VALTA" metaid="ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13" name="valine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_001240</p> + <p>SUBSYSTEM: Valine__Leucine__and_Isoleucine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.42</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ab3fe1bd-a74c-4e17-bb7d-2b5c861e2a13"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.42"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_001240"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_val_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3mob_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PPCDC" metaid="ed9df163-5291-41cb-ac95-96c5bba691c7" name="phosphopantothenoylcysteine_decarboxylase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_015430</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.36</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed9df163-5291-41cb-ac95-96c5bba691c7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.36"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_015430"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_4ppcys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pan4p_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GLYCLTt4pp" metaid="c88ac52f-c624-4690-8e64-f51c7cf6aabe" name="glycolate_transport_via_sodium_symport__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020610</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c88ac52f-c624-4690-8e64-f51c7cf6aabe"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020610"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glyclt_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_na1_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_na1_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_glyclt_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_NI2t3pp" metaid="_1e4068e5-51d7-4fd8-a4f4-8dd61624331a" name="nickle__Ni_2__transport_out_via_proton_antiport__periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010570</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1e4068e5-51d7-4fd8-a4f4-8dd61624331a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010570"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_ni2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ni2_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_H2O2tpp" metaid="_00f62093-9dbf-428f-bb5f-36cc0c95c0c9" name="hydrogen_peroxide_transport_via_diffusion__periplasm_to_cytoplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_00f62093-9dbf-428f-bb5f-36cc0c95c0c9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o2_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PDH" metaid="_89f5fa23-9fb3-4857-9262-2dff6e554c93" name="pyruvate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005940 AND XFCFBP8418_010550 AND XFCFBP8418_010560</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89f5fa23-9fb3-4857-9262-2dff6e554c93"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005940"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010550"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pyr_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_accoa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_TYRTA" metaid="_1a0f1f58-e6e3-42cf-8c76-5029730e45d4" name="tyrosine_transaminase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_014480 ) OR ( XFCFBP8418_020310 )</p> + <p>SUBSYSTEM: Tyrosine__Tryptophan__and_Phenylalanine_Metabolism</p> + <p>EC_NUMBER: 2.6.1.57</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_1a0f1f58-e6e3-42cf-8c76-5029730e45d4"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/2.6.1.57"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020310"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_014480"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_tyr_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_glu_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_34hpp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHP" metaid="ed1c2ad2-b573-4550-aaa1-556818013dc1" name="glutathione_peroxidase__c_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010100</p> + <p>SUBSYSTEM: Superoxide_radicals_degradation</p> + <p>EC_NUMBER: 1.11.1.9</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ed1c2ad2-b573-4550-aaa1-556818013dc1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.11.1.9"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010100"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_h2o2_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthox_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="2"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_GTHS" metaid="_2f3ecbc8-470c-4eb7-9768-26bab3a42633" name="glutathione_synthetase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_000840</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 6.3.2.3</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2f3ecbc8-470c-4eb7-9768-26bab3a42633"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/6.3.2.3"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_000840"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_glucys_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_gly_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_gthrd_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR180" metaid="_68542414-bf2e-46a6-944f-0ee32746eb97" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_0_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_68542414-bf2e-46a6-944f-0ee32746eb97"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_3ooctdACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hoctaACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_3OAR181" metaid="_5f0f1a76-1f64-4e0f-a45f-242afa43424e" name="3_oxoacyl__acyl_carrier_protein__reductase__n_C18_1_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_005910</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.100</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f0f1a76-1f64-4e0f-a45f-242afa43424e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.100"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_005910"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3ocvac11eACP_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nadph_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_3hcvac11eACP_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_E4PD" metaid="_89a7a200-7abe-4471-bcd7-a5c482b3e7d8" name="Erythrose_4_phosphate_dehydrogenase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_007260</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.2.1.72</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_89a7a200-7abe-4471-bcd7-a5c482b3e7d8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.2.1.72"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_007260"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_e4p_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="2"/> + <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ALKP" metaid="_50f0e00d-d655-43c6-82c6-dcd4a2ea5411" name="R_ALKP" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006010</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 3.1.3.2</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_50f0e00d-d655-43c6-82c6-dcd4a2ea5411"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.3.2"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006010"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_dhap_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_dha_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UM4PCP" metaid="_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2" name="UDP_N_acetylmuramoyl_L_alanyl_D_gamma_glutamyl_meso_2_6_diaminopimelate_D_alanine_L_D_carboxypeptidase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_006050</p> + <p>SUBSYSTEM: Murein_Biosynthesis</p> + <p>EC_NUMBER: 3.4.17.13</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_82ef8cdc-f8b5-4c23-b88d-60c94ea708d2"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.4.17.13"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_006050"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_um4p_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ala_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ugmd_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_AKGDH" metaid="_7c11985a-84f0-4221-bf6f-e2d48fdb05e1" name="2_Oxoglutarate_dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_002140 AND XFCFBP8418_002150 AND XFCFBP8418_010560</p> + <p>SUBSYSTEM: Citric_Acid_Cycle</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_7c11985a-84f0-4221-bf6f-e2d48fdb05e1"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:and> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002150"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_002140"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010560"/> + </fbc:and> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_akg_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_succoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_co2_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_Htex" metaid="_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be" name="proton_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_87f9ed1c-6979-4b1d-b0f5-ba4aa7d809be"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE80" metaid="a6fe5fae-c98c-4143-83a3-fa6cc92188e8" name="R_FACOAE80" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#a6fe5fae-c98c-4143-83a3-fa6cc92188e8"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_occoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_octa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_RIBabcpp" metaid="b282077a-1401-46fa-b1d7-a9dd3b808eaa" name="R_RIBabcpp" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.17</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#b282077a-1401-46fa-b1d7-a9dd3b808eaa"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.17"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_rib_D_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_HISabcpp" metaid="ba31d6cb-e824-4706-9e51-539ef32f482a" name="L_histidine_transport_via_ABC_system__periplasm_" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: ( XFCFBP8418_004750 ) OR ( XFCFBP8418_022890 )</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: 3.6.3.21</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#ba31d6cb-e824-4706-9e51-539ef32f482a"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.6.3.21"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:or> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_004750"/> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022890"/> + </fbc:or> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_atp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_his_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pi_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_adp_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ASPt2_2tex" metaid="d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e" name="R_ASPt2_2tex" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Transport__Outer_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#d7e34678-04d4-4e7a-8de6-cc6b0eb0f51e"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_asp_L_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_asp_L_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_IZPN" metaid="_5f616904-a689-4932-ac44-22ad74389bd9" name="imidazolonepropionase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Histidine_Metabolism</p> + <p>EC_NUMBER: 3.5.2.7</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_5f616904-a689-4932-ac44-22ad74389bd9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.5.2.7"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4izp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_forglu_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_ENO" metaid="_179a44bc-7464-4c08-a043-29d4c2ba14ef" name="enolase" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_022220</p> + <p>SUBSYSTEM: Glycolysis_Gluconeogenesis</p> + <p>EC_NUMBER: 4.2.1.11</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_179a44bc-7464-4c08-a043-29d4c2ba14ef"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.2.1.11"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_022220"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_2pg_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_pep_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CO2tex" metaid="_809d6c35-a3db-4775-a2fd-48eafb45eb30" name="CO2_transport_via_diffusion__extracellular_to_periplasm_" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Inorganic_Ion_Transport_and_Metabolism</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_809d6c35-a3db-4775-a2fd-48eafb45eb30"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_co2_e" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_co2_p" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_PERD" metaid="_76242408-fe56-48c6-ba35-5e36fd9d74d9" name="Erythronate_4_phosphate__4per__dehydrogenase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: No_Assignment</p> + <p>SUBSYSTEM: Cofactor_and_Prosthetic_Group_Biosynthesis</p> + <p>EC_NUMBER: 1.1.1.290</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_76242408-fe56-48c6-ba35-5e36fd9d74d9"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/1.1.1.290"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="No_Assignment"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_4per_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_ohpb_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_UDPXYLS" metaid="_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d" name="UDP_xylose_synthase" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_020820</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 4.1.1.35</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_9b1ab803-476c-47f6-b5d0-6bab0d1c3d9d"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.35"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_020820"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_nadh_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udp4kp_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_nad_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_udpxyl_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_CYSTGL" metaid="c92731bb-f621-47fa-b53b-f050ea82b7b7" name="R_CYSTGL" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_010590</p> + <p>SUBSYSTEM: Cystein_Metabolism</p> + <p>EC_NUMBER: 4.4.1.1</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#c92731bb-f621-47fa-b53b-f050ea82b7b7"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/4.4.1.1"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_010590"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_cyst_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_2obut_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_cys_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_nh4_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_99999_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FUCtpp" metaid="_34363cfc-fa7f-4df4-a073-49f5befcdf50" name="R_FUCtpp" reversible="true"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_018650</p> + <p>SUBSYSTEM: Transport__Inner_Membrane</p> + <p>EC_NUMBER: No_Assignment</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_34363cfc-fa7f-4df4-a073-49f5befcdf50"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/No_Assignment"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_018650"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_h_p" stoichiometry="1"/> + <speciesReference constant="true" species="M_fuc_L_p" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_fuc_L_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + <reaction fbc:lowerFluxBound="LOWER_BOUND_0_0" fbc:upperFluxBound="UPPER_BOUND_99999_0" id="R_FACOAE120" metaid="_2691931b-9cfe-40d9-95d9-13e4ed057413" name="R_FACOAE120" reversible="false"> + <notes> + <body xmlns="http://www.w3.org/1999/xhtml"> + <p>GENE_ASSOCIATION: XFCFBP8418_025070</p> + <p>SUBSYSTEM: Cell_Envelope_Biosynthesis</p> + <p>EC_NUMBER: 3.1.2.20</p> + </body> + </notes> + <annotation> + <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> + <rdf:Description rdf:about="#_2691931b-9cfe-40d9-95d9-13e4ed057413"> + <bqbiol:is> + <rdf:Bag> + <rdf:li rdf:resource="http://identifiers.org/ec-code/3.1.2.20"/> + </rdf:Bag> + </bqbiol:is> + </rdf:Description> + </rdf:RDF> + </annotation> + <fbc:geneProductAssociation> + <fbc:geneProductRef fbc:geneProduct="XFCFBP8418_025070"/> + </fbc:geneProductAssociation> + <listOfReactants> + <speciesReference constant="true" species="M_ddcacoa_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h2o_c" stoichiometry="1"/> + </listOfReactants> + <listOfProducts> + <speciesReference constant="true" species="M_ddca_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_h_c" stoichiometry="1"/> + <speciesReference constant="true" species="M_coa_c" stoichiometry="1"/> + </listOfProducts> + </reaction> + </listOfReactions> + </model> +</sbml>