Mercurial > repos > mgarnier > pangenome_cog_analysis
changeset 3:27c5a6f2301c draft
Uploaded
| author | mgarnier |
|---|---|
| date | Fri, 02 Jul 2021 14:54:40 +0000 |
| parents | 0428ce25da81 |
| children | db4e1e6850b0 |
| files | pangenomeCogAnalysis.xml |
| diffstat | 1 files changed, 9 insertions(+), 2 deletions(-) [+] |
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--- a/pangenomeCogAnalysis.xml Fri Jul 02 14:53:33 2021 +0000 +++ b/pangenomeCogAnalysis.xml Fri Jul 02 14:54:40 2021 +0000 @@ -16,7 +16,8 @@ #set $named_input_files = $named_input_files + ',' + $_input_file #end for - perl ${__tool_directory__}/pangenomeCogAnalysis_V1.pl $input $input2 $named_input_files $input_files $gff_files order $output $output2 $output3 $output4 $output5 + perl ${__tool_directory__}/pangenomeCogAnalysis_V1.pl $input $input2 $named_input_files $input_files $gff_files order $output $output2 $output3 $output4 + ]]></command> @@ -34,7 +35,13 @@ <data format="tabular" name="output2" label="COG category count average per group"/> <data format="tabular" name="output3" label="Detailed COG category count values per group"/> <data format="tabular" name="output4" label="COG category count average"/> - <data format="tabular" name="output5" label="Core-genes coordinates"/> + <!--<data format="tabular" name="output5" label="Core-genes coordinates"/>--> + <collection name="output5" type="list" label="Core-genes coordinates"> + <discover_datasets pattern="__name_and_ext__" directory="Core" /> + </collection> + <collection name="output6" type="list" label="Group specific genes coordinates"> + <discover_datasets pattern="__name_and_ext__" directory="GroupSpecific" /> + </collection> </outputs> </tool>