Mercurial > repos > mgarnier > pangenome_cog_analysis
changeset 16:3b12b1b1d67f draft
Uploaded
| author | mgarnier |
|---|---|
| date | Thu, 19 Aug 2021 19:12:05 +0000 |
| parents | ae68b2a86229 |
| children | 574fece473bf |
| files | pangenomeCogAnalysis.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/pangenomeCogAnalysis.xml Thu Aug 19 13:39:39 2021 +0000 +++ b/pangenomeCogAnalysis.xml Thu Aug 19 19:12:05 2021 +0000 @@ -16,7 +16,7 @@ #set $named_input_files = $named_input_files + ',' + $_input_file #end for - perl ${__tool_directory__}/pangenomeCogAnalysis_V1.pl $input $input2 $input_files $named_input_files $gff_files $output $output2 $output3 $output4 $output8 $output9 + perl ${__tool_directory__}/pangenomeCogAnalysis.pl $input $input2 $input_files $named_input_files $gff_files $output $output2 $output3 $output8 $output9 ]]></command> @@ -34,7 +34,7 @@ <data format="txt" name="output" label="List of group-specific clusters"/> <data format="tabular" name="output2" label="COG category count average per group"/> <data format="tabular" name="output3" label="Detailed COG category count values per group"/> - <data format="tabular" name="output4" label="COG category count average"/> + <!-- <data format="tabular" name="output4" label="COG category count average"/>--> <!--<data format="tabular" name="output5" label="Core-genes coordinates"/>--> <collection name="output5" type="list" label="Core-genes coordinates"> <discover_datasets pattern="__name_and_ext__" directory="Core" /> @@ -45,8 +45,8 @@ <collection name="output7" type="list" label="Strain specific genes coordinates"> <discover_datasets pattern="__name_and_ext__" directory="StrainSpecific" /> </collection> - <data format="txt" name="output8" label="Odds ratio for core/accessory/unique"/> - <data format="txt" name="output9" label="Odds ratio comparison between groups"/> + <data format="tabular" name="output8" label="Odds ratio for core/accessory/unique"/> + <data format="tabular" name="output9" label="Odds ratio comparison between groups"/> </outputs> </tool>