Mercurial > repos > mheinzl > fsd
comparison fsd.py @ 7:43b16247c35a draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 0641c8994fa786f303f6546d88ce24f15504d9b0
| author | mheinzl |
|---|---|
| date | Wed, 09 May 2018 09:24:18 -0400 |
| parents | c4b8222dce29 |
| children | f7136e93604b |
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| 6:c4b8222dce29 | 7:43b16247c35a |
|---|---|
| 84 | 84 |
| 85 with open(title_file, "w") as output_file, PdfPages(title_file2) as pdf: | 85 with open(title_file, "w") as output_file, PdfPages(title_file2) as pdf: |
| 86 fig = plt.figure() | 86 fig = plt.figure() |
| 87 plt.subplots_adjust(bottom=0.25) | 87 plt.subplots_adjust(bottom=0.25) |
| 88 if firstFile != str(None): | 88 if firstFile != str(None): |
| 89 print(firstFile) | |
| 90 | |
| 89 file1 = readFileReferenceFree(firstFile) | 91 file1 = readFileReferenceFree(firstFile) |
| 90 integers = numpy.array(file1[:, 0]).astype(int) ## keep original family sizes | 92 integers = numpy.array(file1[:, 0]).astype(int) ## keep original family sizes |
| 91 | 93 |
| 92 # for plot: replace all big family sizes by 22 | 94 # for plot: replace all big family sizes by 22 |
| 93 data1 = numpy.array(file1[:, 0]).astype(int) | 95 data1 = numpy.array(file1[:, 0]).astype(int) |