Mercurial > repos > mheinzl > fsd
comparison fsd.py @ 36:54ba0ad1263f draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
| author | mheinzl |
|---|---|
| date | Mon, 03 Jun 2019 07:22:06 -0400 |
| parents | 56ad50707dc8 |
| children | 67e34fc2b67a |
comparison
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| 35:56ad50707dc8 | 36:54ba0ad1263f |
|---|---|
| 280 ticks1 = map(str, ticks) | 280 ticks1 = map(str, ticks) |
| 281 if maximumX > 20: | 281 if maximumX > 20: |
| 282 ticks1[len(ticks1) - 1] = ">20" | 282 ticks1[len(ticks1) - 1] = ">20" |
| 283 | 283 |
| 284 if to_plot[l] == "Relative frequencies": | 284 if to_plot[l] == "Relative frequencies": |
| 285 counts_rel = ax.hist(list_to_plot2, bins=numpy.arange(minimumX, maximumX + 2), stacked=False, edgecolor="black", linewidth=1, label=label, align="left", alpha=0.8, rwidth=0.8, normed=True) | 285 counts_rel = ax.hist(list_to_plot2, bins=numpy.arange(minimumX, maximumX + 2), stacked=False, edgecolor="black", linewidth=1, label=label, align="left", alpha=0.8, rwidth=0.8, density=True, color=colors) |
| 286 else: | 286 else: |
| 287 counts = ax.hist(list_to_plot2, bins=numpy.arange(minimumX, maximumX + 2), stacked=False, edgecolor="black", linewidth=1, label=label, align="left", alpha=0.8, rwidth=0.8) | 287 counts = ax.hist(list_to_plot2, bins=numpy.arange(minimumX, maximumX + 2), stacked=False, edgecolor="black", linewidth=1, label=label, align="left", alpha=0.8, rwidth=0.8, color=colors) |
| 288 ax.legend(loc='upper right', fontsize=14, frameon=True, bbox_to_anchor=(0.9, 1)) | 288 ax.legend(loc='upper right', fontsize=14, frameon=True, bbox_to_anchor=(0.9, 1)) |
| 289 | 289 |
| 290 ax.set_xticks(numpy.array(ticks)) | 290 ax.set_xticks(numpy.array(ticks)) |
| 291 ax.set_xticklabels(ticks1) | 291 ax.set_xticklabels(ticks1) |
| 292 | 292 |
| 339 | 339 |
| 340 | 340 |
| 341 #print(label[i]) | 341 #print(label[i]) |
| 342 #print(colors[i]) | 342 #print(colors[i]) |
| 343 #print(w) | 343 #print(w) |
| 344 # linewidth=1, | 344 # |
| 345 | 345 |
| 346 #print(numpy.sum(y)) | 346 #print(numpy.sum(y)) |
| 347 #print(float(numpy.sum(y))) | 347 #print(float(numpy.sum(y))) |
| 348 #print(x) | 348 #print(x) |
| 349 #print(new_y.shape) | 349 #print(new_y.shape) |
| 357 #print(new_y_heights) | 357 #print(new_y_heights) |
| 358 #print(new_y.shape) | 358 #print(new_y.shape) |
| 359 | 359 |
| 360 if to_plot[l] == "Relative frequencies": | 360 if to_plot[l] == "Relative frequencies": |
| 361 print("relative") | 361 print("relative") |
| 362 new_y = list(numpy.concatenate((numpy.array([yi / float(numpy.sum(y)) for yi in y])))) | 362 #new_y = list(numpy.concatenate((numpy.array([yi / float(numpy.sum(y)) for yi in y])))) |
| 363 | 363 |
| 364 counts2_rel = ax.bar(x, new_y, align="edge", width=w, | 364 counts2_rel = ax.bar(x, list(numpy.float_(y)) / numpy.sum(y), align="edge", width=w, |
| 365 edgecolor="black", label=label[i], alpha=0.8, color=colors[i]) | 365 edgecolor="black", label=label[i],linewidth=1, alpha=0.8, color=colors[i]) |
| 366 | 366 |
| 367 else: | 367 else: |
| 368 print("absolute") | |
| 369 print(y.shape) | |
| 370 #print(x.shape) | |
| 371 print(y) | |
| 372 y = list(y.reshape((len(y)))) | 368 y = list(y.reshape((len(y)))) |
| 373 | 369 |
| 374 counts2 = ax.bar(x, y, align="edge", width=w, edgecolor="black", label=label[i], | 370 counts2 = ax.bar(x, y, align="edge", width=w, edgecolor="black", label=label[i], linewidth=1, |
| 375 alpha=0.8, color=colors[i]) | 371 alpha=0.8, color=colors[i]) |
| 376 if i == len(list_to_plot2): | 372 if i == len(list_to_plot2): |
| 377 barWidth += 1. / (len(list_to_plot) + 1) + 1. / (len(list_to_plot) + 1) | 373 barWidth += 1. / (len(list_to_plot) + 1) + 1. / (len(list_to_plot) + 1) |
| 378 else: | 374 else: |
| 379 barWidth += 1. / (len(list_to_plot) + 1) | 375 barWidth += 1. / (len(list_to_plot) + 1) |