comparison fsd.xml @ 45:6651e76baca1 draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty

44:a76af7fd9fca

<?xml version="1.0" encoding="UTF-8"?>
<!-- galaxy version 16.04 -->
<tool id="fsd" name="FSD" version="1.0.5">
    <description>: Family Size Distribution of duplex sequencing tags</description>
    <requirements>
        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="1.4.0">matplotlib</requirement>
    </requirements>
    
    <command>
        python2 '$__tool_directory__/fsd.py' --inputFile1 '${file1}' --inputName1 '${file1.name}' 
--inputFile2 '${file2}' --inputName2 '${file2.name}' --inputFile3 '${file3}' --inputName3 '${file3.name}' 
--inputFile4 '${file4}' --inputName4 '${file4.name}' $log_axis --output_pdf $output_pdf --output_tabular $output_tabular 
    </command>
    <inputs>
        <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/>
        <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true"  />
        <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" />
        <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true"  help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/>
        <param name="log_axis" type="boolean" label="log scale for y axis?" truevalue="" falsevalue="--log_axis" checked="False" help="Transform y axis in log scale."/>
		
    </inputs>
    <outputs>
        <data name="output_pdf" format="pdf" />
        <data name="output_tabular" format="tabular"/>
    </outputs>

45:6651e76baca1

<?xml version="1.0" encoding="UTF-8"?>
<!-- galaxy version 16.04 -->
<tool id="fsd" name="FSD" version="1.0.6">
    <description>: Family Size Distribution of duplex sequencing tags</description>
    <requirements>
        <requirement type="package" version="2.7">python</requirement>
        <requirement type="package" version="1.4.0">matplotlib</requirement>
    </requirements>
    
    <command>
        python2 '$__tool_directory__/fsd.py' --inputFile1 '${file1}' --inputName1 '${file1.name}' 
--inputFile2 '${file2}' --inputName2 '${file2.name}' --inputFile3 '${file3}' --inputName3 '${file3.name}' 
--inputFile4 '${file4}' --inputName4 '${file4.name}' $log_axis $rel_freq --output_pdf $output_pdf --output_tabular $output_tabular 
    </command>
    <inputs>
        <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/>
        <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true"  />
        <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" />
        <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true"  help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/>
        <param name="log_axis" type="boolean" label="log scale for y axis?" truevalue="" falsevalue="--log_axis" checked="False" help="Transform y axis in log scale."/>
        <param name="rel_freq" type="boolean" label="relative frequency?" truevalue="" falsevalue="--rel_freq" checked="False" help="If True, the relative frequencies instead of the absolute values are displayed in the plots."/>
    </inputs>
    <outputs>
        <data name="output_pdf" format="pdf" />
        <data name="output_tabular" format="tabular"/>
    </outputs>