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comparison test-data/fsd_output1.tab @ 45:6651e76baca1 draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit 033dd7b750f68e8aa68f327d7d72bd311ddbee4e-dirty
author mheinzl
date Tue, 27 Aug 2019 07:36:53 -0400
parents f72593bcc8ee
children e51fe3083b16
comparison
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44:a76af7fd9fca 45:6651e76baca1
1 Values from family size distribution with all datasets (tags) 1 Values from family size distribution with all datasets based on families
2 2
3 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab 3 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab
4 FS=1 63 63 63 63 4 FS=1 63 63 63 63
5 FS=2 5 5 5 5 5 FS=2 5 5 5 5
6 FS=3 8 8 8 8 6 FS=3 8 8 8 8
22 FS=19 0 0 0 0 22 FS=19 0 0 0 0
23 FS=20 0 0 0 0 23 FS=20 0 0 0 0
24 FS>20 1 1 1 1 24 FS>20 1 1 1 1
25 sum 112 112 112 112 25 sum 112 112 112 112
26 26
27 Values from family size distribution with all datasets (PE reads) 27 Values from family size distribution with all datasets based on PE reads
28 28
29 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab 29 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab
30 FS=1 63 63 63 63 30 FS=1 63 63 63 63
31 FS=2 10 10 10 10 31 FS=2 10 10 10 10
32 FS=3 24 24 24 24 32 FS=3 24 24 24 24
77 SSCS ab 14 87 0.341 0.259 0.313 0.224 77 SSCS ab 14 87 0.341 0.259 0.313 0.224
78 SSCS ba 26 187 0.491 0.481 0.495 0.482 78 SSCS ba 26 187 0.491 0.481 0.495 0.482
79 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) 79 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
80 total nr. of tags 41 278 41 42 278 288 80 total nr. of tags 41 278 41 42 278 288
81 81
82 Values from family size distribution 82 Values from family size distribution based on families
83 duplex ab ba sum 83 duplex ab ba sum
84 FS=1 2 30 31 63 84 FS=1 2 30 31 63
85 FS=2 0 3 2 5 85 FS=2 0 3 2 5
86 FS=3 0 3 5 8 86 FS=3 0 3 5 8
87 FS=4 2 3 4 9 87 FS=4 2 3 4 9
100 FS=17 0 0 0 0 100 FS=17 0 0 0 0
101 FS=18 0 0 0 0 101 FS=18 0 0 0 0
102 FS=19 0 0 0 0 102 FS=19 0 0 0 0
103 FS=20 0 0 0 0 103 FS=20 0 0 0 0
104 FS>20 0 0 1 1 104 FS>20 0 0 1 1
105 sum 6 47 59 112
106
107 Values from family size distribution based on PE reads
108 duplex ab ba sum
109 FS=1 2 30 31 63
110 FS=2 0 6 4 10
111 FS=3 0 9 15 24
112 FS=4 8 12 16 36
113 FS=5 0 10 5 15
114 FS=6 0 6 24 30
115 FS=7 0 7 14 21
116 FS=8 0 8 16 24
117 FS=9 0 0 18 18
118 FS=10 10 10 10 30
119 FS=11 0 0 11 11
120 FS=12 0 12 24 36
121 FS=13 13 13 13 39
122 FS=14 0 0 0 0
123 FS=15 0 0 0 0
124 FS=16 0 0 0 0
125 FS=17 0 0 0 0
126 FS=18 0 0 0 0
127 FS=19 0 0 0 0
128 FS=20 0 0 0 0
129 FS>20 0 0 21 21
130 sum 33 123 222 378
105 131
106 Dataset: fsd_data2.tab 132 Dataset: fsd_data2.tab
107 max. family size: 21 133 max. family size: 21
108 absolute frequency: 1 134 absolute frequency: 1
109 relative frequency: 0.009 135 relative frequency: 0.009
130 SSCS ab 14 87 0.341 0.259 0.313 0.224 156 SSCS ab 14 87 0.341 0.259 0.313 0.224
131 SSCS ba 26 187 0.491 0.481 0.495 0.482 157 SSCS ba 26 187 0.491 0.481 0.495 0.482
132 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) 158 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
133 total nr. of tags 41 278 41 42 278 288 159 total nr. of tags 41 278 41 42 278 288
134 160
135 Values from family size distribution 161 Values from family size distribution based on families
136 duplex ab ba sum 162 duplex ab ba sum
137 FS=1 2 30 31 63 163 FS=1 2 30 31 63
138 FS=2 0 3 2 5 164 FS=2 0 3 2 5
139 FS=3 0 3 5 8 165 FS=3 0 3 5 8
140 FS=4 2 3 4 9 166 FS=4 2 3 4 9
153 FS=17 0 0 0 0 179 FS=17 0 0 0 0
154 FS=18 0 0 0 0 180 FS=18 0 0 0 0
155 FS=19 0 0 0 0 181 FS=19 0 0 0 0
156 FS=20 0 0 0 0 182 FS=20 0 0 0 0
157 FS>20 0 0 1 1 183 FS>20 0 0 1 1
184 sum 6 47 59 112
185
186 Values from family size distribution based on PE reads
187 duplex ab ba sum
188 FS=1 2 30 31 63
189 FS=2 0 6 4 10
190 FS=3 0 9 15 24
191 FS=4 8 12 16 36
192 FS=5 0 10 5 15
193 FS=6 0 6 24 30
194 FS=7 0 7 14 21
195 FS=8 0 8 16 24
196 FS=9 0 0 18 18
197 FS=10 10 10 10 30
198 FS=11 0 0 11 11
199 FS=12 0 12 24 36
200 FS=13 13 13 13 39
201 FS=14 0 0 0 0
202 FS=15 0 0 0 0
203 FS=16 0 0 0 0
204 FS=17 0 0 0 0
205 FS=18 0 0 0 0
206 FS=19 0 0 0 0
207 FS=20 0 0 0 0
208 FS>20 0 0 21 21
209 sum 33 123 222 378
158 210
159 Dataset: fsd_data3.tab 211 Dataset: fsd_data3.tab
160 max. family size: 21 212 max. family size: 21
161 absolute frequency: 1 213 absolute frequency: 1
162 relative frequency: 0.009 214 relative frequency: 0.009
183 SSCS ab 14 87 0.341 0.259 0.313 0.224 235 SSCS ab 14 87 0.341 0.259 0.313 0.224
184 SSCS ba 26 187 0.491 0.481 0.495 0.482 236 SSCS ba 26 187 0.491 0.481 0.495 0.482
185 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) 237 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
186 total nr. of tags 41 278 41 42 278 288 238 total nr. of tags 41 278 41 42 278 288
187 239
188 Values from family size distribution 240 Values from family size distribution based on families
189 duplex ab ba sum 241 duplex ab ba sum
190 FS=1 2 30 31 63 242 FS=1 2 30 31 63
191 FS=2 0 3 2 5 243 FS=2 0 3 2 5
192 FS=3 0 3 5 8 244 FS=3 0 3 5 8
193 FS=4 2 3 4 9 245 FS=4 2 3 4 9
206 FS=17 0 0 0 0 258 FS=17 0 0 0 0
207 FS=18 0 0 0 0 259 FS=18 0 0 0 0
208 FS=19 0 0 0 0 260 FS=19 0 0 0 0
209 FS=20 0 0 0 0 261 FS=20 0 0 0 0
210 FS>20 0 0 1 1 262 FS>20 0 0 1 1
263 sum 6 47 59 112
264
265 Values from family size distribution based on PE reads
266 duplex ab ba sum
267 FS=1 2 30 31 63
268 FS=2 0 6 4 10
269 FS=3 0 9 15 24
270 FS=4 8 12 16 36
271 FS=5 0 10 5 15
272 FS=6 0 6 24 30
273 FS=7 0 7 14 21
274 FS=8 0 8 16 24
275 FS=9 0 0 18 18
276 FS=10 10 10 10 30
277 FS=11 0 0 11 11
278 FS=12 0 12 24 36
279 FS=13 13 13 13 39
280 FS=14 0 0 0 0
281 FS=15 0 0 0 0
282 FS=16 0 0 0 0
283 FS=17 0 0 0 0
284 FS=18 0 0 0 0
285 FS=19 0 0 0 0
286 FS=20 0 0 0 0
287 FS>20 0 0 21 21
288 sum 33 123 222 378
211 289
212 Dataset: fsd_data4.tab 290 Dataset: fsd_data4.tab
213 max. family size: 21 291 max. family size: 21
214 absolute frequency: 1 292 absolute frequency: 1
215 relative frequency: 0.009 293 relative frequency: 0.009
236 SSCS ab 14 87 0.341 0.259 0.313 0.224 314 SSCS ab 14 87 0.341 0.259 0.313 0.224
237 SSCS ba 26 187 0.491 0.481 0.495 0.482 315 SSCS ba 26 187 0.491 0.481 0.495 0.482
238 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) 316 DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049)
239 total nr. of tags 41 278 41 42 278 288 317 total nr. of tags 41 278 41 42 278 288
240 318
241 Values from family size distribution 319 Values from family size distribution based on families
242 duplex ab ba sum 320 duplex ab ba sum
243 FS=1 2 30 31 63 321 FS=1 2 30 31 63
244 FS=2 0 3 2 5 322 FS=2 0 3 2 5
245 FS=3 0 3 5 8 323 FS=3 0 3 5 8
246 FS=4 2 3 4 9 324 FS=4 2 3 4 9
259 FS=17 0 0 0 0 337 FS=17 0 0 0 0
260 FS=18 0 0 0 0 338 FS=18 0 0 0 0
261 FS=19 0 0 0 0 339 FS=19 0 0 0 0
262 FS=20 0 0 0 0 340 FS=20 0 0 0 0
263 FS>20 0 0 1 1 341 FS>20 0 0 1 1
342 sum 6 47 59 112
343
344 Values from family size distribution based on PE reads
345 duplex ab ba sum
346 FS=1 2 30 31 63
347 FS=2 0 6 4 10
348 FS=3 0 9 15 24
349 FS=4 8 12 16 36
350 FS=5 0 10 5 15
351 FS=6 0 6 24 30
352 FS=7 0 7 14 21
353 FS=8 0 8 16 24
354 FS=9 0 0 18 18
355 FS=10 10 10 10 30
356 FS=11 0 0 11 11
357 FS=12 0 12 24 36
358 FS=13 13 13 13 39
359 FS=14 0 0 0 0
360 FS=15 0 0 0 0
361 FS=16 0 0 0 0
362 FS=17 0 0 0 0
363 FS=18 0 0 0 0
364 FS=19 0 0 0 0
365 FS=20 0 0 0 0
366 FS>20 0 0 21 21
367 sum 33 123 222 378