Mercurial > repos > mheinzl > fsd
comparison fsd.py @ 11:b615c7e51f40 draft
planemo upload for repository https://github.com/monikaheinzl/galaxyProject/tree/master/tools/fsd commit 29bc65d5627553741c83ce1f298223e2b266f7c8
| author | mheinzl |
|---|---|
| date | Tue, 15 May 2018 14:22:43 -0400 |
| parents | f7136e93604b |
| children | 9033fd840986 |
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| 10:f7136e93604b | 11:b615c7e51f40 |
|---|---|
| 40 parser.add_argument('--inputFile4',default=None, | 40 parser.add_argument('--inputFile4',default=None, |
| 41 help='Tabular File with three columns: ab or ba, tag and family size.') | 41 help='Tabular File with three columns: ab or ba, tag and family size.') |
| 42 parser.add_argument('--inputName4') | 42 parser.add_argument('--inputName4') |
| 43 parser.add_argument('--sep', default=",", | 43 parser.add_argument('--sep', default=",", |
| 44 help='Separator in the csv file.') | 44 help='Separator in the csv file.') |
| 45 parser.add_argument('--output_pdf', default="data.pdf",type=str, | |
| 46 help='Name of the pdf file.') | |
| 45 parser.add_argument('--output_csv', default="data.csv",type=str, | 47 parser.add_argument('--output_csv', default="data.csv",type=str, |
| 46 help='Name of the pdf and csv file.') | 48 help='Name of the csv file.') |
| 47 parser.add_argument('--output_pdf', default="data.pdf",type=str, | 49 |
| 48 help='Name of the pdf and csv file.') | |
| 49 return parser | 50 return parser |
| 50 | 51 |
| 51 def compare_read_families(argv): | 52 def compare_read_families(argv): |
| 52 parser = make_argparser() | 53 parser = make_argparser() |
| 53 args=parser.parse_args(argv[1:]) | 54 args=parser.parse_args(argv[1:]) |