Mercurial > repos > mheinzl > fsd
comparison fsd.xml @ 18:c825a29a7d9f draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author | mheinzl |
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date | Wed, 08 May 2019 07:03:39 -0400 |
parents | 2e517a54eedc |
children | 948064d8714e |
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17:2e517a54eedc | 18:c825a29a7d9f |
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8 </requirements> | 8 </requirements> |
9 | 9 |
10 <command> | 10 <command> |
11 python2 '$__tool_directory__/fsd.py' --inputFile1 '${file1}' --inputName1 '${file1.name}' | 11 python2 '$__tool_directory__/fsd.py' --inputFile1 '${file1}' --inputName1 '${file1.name}' |
12 --inputFile2 '${file2}' --inputName2 '${file2.name}' --inputFile3 '${file3}' --inputName3 '${file3.name}' | 12 --inputFile2 '${file2}' --inputName2 '${file2.name}' --inputFile3 '${file3}' --inputName3 '${file3.name}' |
13 --inputFile4 '${file4}' --inputName4 '${file4.name}' --output_pdf $output_pdf --output_tabular $output_tabular | 13 --inputFile4 '${file4}' --inputName4 '${file4.name}' $log_axis --output_pdf $output_pdf --output_tabular $output_tabular |
14 </command> | 14 </command> |
15 <inputs> | 15 <inputs> |
16 <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/> | 16 <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/> |
17 <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true" /> | 17 <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true" /> |
18 <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" /> | 18 <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" /> |
19 <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/> | 19 <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/> |
20 <param name="log_axis" type="boolean" label="log scale for y axis?" truevalue="" falsevalue="--log_axis" checked="False" help="Transform y axis in log scale."/> | |
21 | |
20 </inputs> | 22 </inputs> |
21 <outputs> | 23 <outputs> |
22 <data name="output_pdf" format="pdf" /> | 24 <data name="output_pdf" format="pdf" /> |
23 <data name="output_tabular" format="tabular"/> | 25 <data name="output_tabular" format="tabular"/> |
24 </outputs> | 26 </outputs> |