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comparison fsd.xml @ 18:c825a29a7d9f draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author mheinzl
date Wed, 08 May 2019 07:03:39 -0400
parents 2e517a54eedc
children 948064d8714e
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17:2e517a54eedc 18:c825a29a7d9f
8 </requirements> 8 </requirements>
9 9
10 <command> 10 <command>
11 python2 '$__tool_directory__/fsd.py' --inputFile1 '${file1}' --inputName1 '${file1.name}' 11 python2 '$__tool_directory__/fsd.py' --inputFile1 '${file1}' --inputName1 '${file1.name}'
12 --inputFile2 '${file2}' --inputName2 '${file2.name}' --inputFile3 '${file3}' --inputName3 '${file3.name}' 12 --inputFile2 '${file2}' --inputName2 '${file2.name}' --inputFile3 '${file3}' --inputName3 '${file3.name}'
13 --inputFile4 '${file4}' --inputName4 '${file4.name}' --output_pdf $output_pdf --output_tabular $output_tabular 13 --inputFile4 '${file4}' --inputName4 '${file4.name}' $log_axis --output_pdf $output_pdf --output_tabular $output_tabular
14 </command> 14 </command>
15 <inputs> 15 <inputs>
16 <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/> 16 <param name="file1" type="data" format="tabular" label="Dataset 1: input tags" optional="false"/>
17 <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true" /> 17 <param name="file2" type="data" format="tabular" label="Dataset 2: input tags" optional="true" />
18 <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" /> 18 <param name="file3" type="data" format="tabular" label="Dataset 3: input tags" optional="true" />
19 <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/> 19 <param name="file4" type="data" format="tabular" label="Dataset 4: input tags" optional="true" help="Input in tabular format with the family size, tags and the direction of the strand ('ab' or 'ba') for each family. Name of the files can have max. 34 charcters!"/>
20 <param name="log_axis" type="boolean" label="log scale for y axis?" truevalue="" falsevalue="--log_axis" checked="False" help="Transform y axis in log scale."/>
21
20 </inputs> 22 </inputs>
21 <outputs> 23 <outputs>
22 <data name="output_pdf" format="pdf" /> 24 <data name="output_pdf" format="pdf" />
23 <data name="output_tabular" format="tabular"/> 25 <data name="output_tabular" format="tabular"/>
24 </outputs> 26 </outputs>