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comparison test-data/fsd_output1.tab @ 18:c825a29a7d9f draft

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planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author mheinzl
date Wed, 08 May 2019 07:03:39 -0400
parents 2e517a54eedc
children f72593bcc8ee
comparison
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17:2e517a54eedc 18:c825a29a7d9f
1 Values from family size distribution with all datasets 1 Values from family size distribution with all datasets (tags)
2 2
3 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab 3 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab
4 FS=1 63 63 63 63 4 FS=1 63 63 63 63
5 FS=2 5 5 5 5 5 FS=2 5 5 5 5
6 FS=3 8 8 8 8 6 FS=3 8 8 8 8
21 FS=18 0 0 0 0 21 FS=18 0 0 0 0
22 FS=19 0 0 0 0 22 FS=19 0 0 0 0
23 FS=20 0 0 0 0 23 FS=20 0 0 0 0
24 FS>20 1 1 1 1 24 FS>20 1 1 1 1
25 sum 112 112 112 112 25 sum 112 112 112 112
26
27 Values from family size distribution with all datasets (PE reads)
28
29 Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab fsd_data4.tab
30 FS=1 63 63 63 63
31 FS=2 10 10 10 10
32 FS=3 24 24 24 24
33 FS=4 36 36 36 36
34 FS=5 15 15 15 15
35 FS=6 30 30 30 30
36 FS=7 21 21 21 21
37 FS=8 24 24 24 24
38 FS=9 18 18 18 18
39 FS=10 30 30 30 30
40 FS=11 11 11 11 11
41 FS=12 36 36 36 36
42 FS=13 39 39 39 39
43 FS=14 0 0 0 0
44 FS=15 0 0 0 0
45 FS=16 0 0 0 0
46 FS=17 0 0 0 0
47 FS=18 0 0 0 0
48 FS=19 0 0 0 0
49 FS=20 0 0 0 0
50 FS>20 21 21 21 21
51 sum 378 378 378 378
52
26 Dataset: fsd_data1.tab 53 Dataset: fsd_data1.tab
27 max. family size: 21 54 max. family size: 21
28 absolute frequency: 1 55 absolute frequency: 1
29 relative frequency: 0.009 56 relative frequency: 0.009
30 57
31 singletons: family size > 20: 58 singletons: family size > 20: length of dataset:
32 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads 59 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
33 fsd_data1.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 60 fsd_data1.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
34 61
35 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) 62 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
36 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). 63 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
76 Dataset: fsd_data2.tab 103 Dataset: fsd_data2.tab
77 max. family size: 21 104 max. family size: 21
78 absolute frequency: 1 105 absolute frequency: 1
79 relative frequency: 0.009 106 relative frequency: 0.009
80 107
81 singletons: family size > 20: 108 singletons: family size > 20: length of dataset:
82 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads 109 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
83 fsd_data2.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 110 fsd_data2.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
84 111
85 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) 112 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
86 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). 113 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
126 Dataset: fsd_data3.tab 153 Dataset: fsd_data3.tab
127 max. family size: 21 154 max. family size: 21
128 absolute frequency: 1 155 absolute frequency: 1
129 relative frequency: 0.009 156 relative frequency: 0.009
130 157
131 singletons: family size > 20: 158 singletons: family size > 20: length of dataset:
132 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads 159 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
133 fsd_data3.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 160 fsd_data3.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
134 161
135 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) 162 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
136 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). 163 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
176 Dataset: fsd_data4.tab 203 Dataset: fsd_data4.tab
177 max. family size: 21 204 max. family size: 21
178 absolute frequency: 1 205 absolute frequency: 1
179 relative frequency: 0.009 206 relative frequency: 0.009
180 207
181 singletons: family size > 20: 208 singletons: family size > 20: length of dataset:
182 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads 209 nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads
183 fsd_data4.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 210 fsd_data4.tab 63 0.562 0.167 1 0.009 21 0.056 112 378
184 211
185 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) 212 The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
186 Whereas the total frequencies were calculated from the whole dataset (=including the DCS). 213 Whereas the total frequencies were calculated from the whole dataset (=including the DCS).