diff test-data/fsd_output1.tab @ 17:2e517a54eedc draft

planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
author mheinzl
date Tue, 02 Apr 2019 05:10:09 -0400
parents
children c825a29a7d9f
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fsd_output1.tab	Tue Apr 02 05:10:09 2019 -0400
@@ -0,0 +1,224 @@
+Values from family size distribution with all datasets
+
+Family size	fsd_data1.tab	fsd_data2.tab	fsd_data3.tab	fsd_data4.tab
+FS=1	63	63	63	63	
+FS=2	5	5	5	5	
+FS=3	8	8	8	8	
+FS=4	9	9	9	9	
+FS=5	3	3	3	3	
+FS=6	5	5	5	5	
+FS=7	3	3	3	3	
+FS=8	3	3	3	3	
+FS=9	2	2	2	2	
+FS=10	3	3	3	3	
+FS=11	1	1	1	1	
+FS=12	3	3	3	3	
+FS=13	3	3	3	3	
+FS=14	0	0	0	0	
+FS=15	0	0	0	0	
+FS=16	0	0	0	0	
+FS=17	0	0	0	0	
+FS=18	0	0	0	0	
+FS=19	0	0	0	0	
+FS=20	0	0	0	0	
+FS>20	1	1	1	1	
+sum	112	112	112	112	
+Dataset:	fsd_data1.tab
+max. family size:	21
+absolute frequency:	1
+relative frequency:	0.009
+
+	singletons:			family size > 20:
+	nr. of tags	rel. freq of tags	rel.freq of PE reads	nr. of tags	rel. freq of tags	nr. of PE reads	rel. freq of PE reads	total nr. of tags	total nr. of PE reads
+fsd_data1.tab	63	0.562	0.167	1	0.009	21	0.056	112	378
+
+The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
+Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
+
+FS >= 1	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	47	123	0.431	0.339	0.420	0.325
+SSCS ba	59	222	0.488	0.481	0.476	0.468
+DCS (total)	3 (6)	18 (33)	0.028	0.027 (0.054)	0.050	0.048 (0.087)
+total nr. of tags	109	363	109	112	363	378
+
+FS >= 3	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	14	87	0.341	0.259	0.313	0.224
+SSCS ba	26	187	0.491	0.481	0.495	0.482
+DCS (total)	1 (2)	4 (14)	0.024	0.024 (0.048)	0.014	0.014 (0.049)
+total nr. of tags	41	278	41	42	278	288
+
+Values from family size distribution
+	duplex	ab	ba	sum
+FS=1	2	30	31	63
+FS=2	0	3	2	5
+FS=3	0	3	5	8
+FS=4	2	3	4	9
+FS=5	0	2	1	3
+FS=6	0	1	4	5
+FS=7	0	1	2	3
+FS=8	0	1	2	3
+FS=9	0	0	2	2
+FS=10	1	1	1	3
+FS=11	0	0	1	1
+FS=12	0	1	2	3
+FS=13	1	1	1	3
+FS=14	0	0	0	0
+FS=15	0	0	0	0
+FS=16	0	0	0	0
+FS=17	0	0	0	0
+FS=18	0	0	0	0
+FS=19	0	0	0	0
+FS=20	0	0	0	0
+FS>20	0	0	1	1
+
+Dataset:	fsd_data2.tab
+max. family size:	21
+absolute frequency:	1
+relative frequency:	0.009
+
+	singletons:			family size > 20:
+	nr. of tags	rel. freq of tags	rel.freq of PE reads	nr. of tags	rel. freq of tags	nr. of PE reads	rel. freq of PE reads	total nr. of tags	total nr. of PE reads
+fsd_data2.tab	63	0.562	0.167	1	0.009	21	0.056	112	378
+
+The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
+Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
+
+FS >= 1	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	47	123	0.431	0.339	0.420	0.325
+SSCS ba	59	222	0.488	0.481	0.476	0.468
+DCS (total)	3 (6)	18 (33)	0.028	0.027 (0.054)	0.050	0.048 (0.087)
+total nr. of tags	109	363	109	112	363	378
+
+FS >= 3	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	14	87	0.341	0.259	0.313	0.224
+SSCS ba	26	187	0.491	0.481	0.495	0.482
+DCS (total)	1 (2)	4 (14)	0.024	0.024 (0.048)	0.014	0.014 (0.049)
+total nr. of tags	41	278	41	42	278	288
+
+Values from family size distribution
+	duplex	ab	ba	sum
+FS=1	2	30	31	63
+FS=2	0	3	2	5
+FS=3	0	3	5	8
+FS=4	2	3	4	9
+FS=5	0	2	1	3
+FS=6	0	1	4	5
+FS=7	0	1	2	3
+FS=8	0	1	2	3
+FS=9	0	0	2	2
+FS=10	1	1	1	3
+FS=11	0	0	1	1
+FS=12	0	1	2	3
+FS=13	1	1	1	3
+FS=14	0	0	0	0
+FS=15	0	0	0	0
+FS=16	0	0	0	0
+FS=17	0	0	0	0
+FS=18	0	0	0	0
+FS=19	0	0	0	0
+FS=20	0	0	0	0
+FS>20	0	0	1	1
+
+Dataset:	fsd_data3.tab
+max. family size:	21
+absolute frequency:	1
+relative frequency:	0.009
+
+	singletons:			family size > 20:
+	nr. of tags	rel. freq of tags	rel.freq of PE reads	nr. of tags	rel. freq of tags	nr. of PE reads	rel. freq of PE reads	total nr. of tags	total nr. of PE reads
+fsd_data3.tab	63	0.562	0.167	1	0.009	21	0.056	112	378
+
+The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
+Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
+
+FS >= 1	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	47	123	0.431	0.339	0.420	0.325
+SSCS ba	59	222	0.488	0.481	0.476	0.468
+DCS (total)	3 (6)	18 (33)	0.028	0.027 (0.054)	0.050	0.048 (0.087)
+total nr. of tags	109	363	109	112	363	378
+
+FS >= 3	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	14	87	0.341	0.259	0.313	0.224
+SSCS ba	26	187	0.491	0.481	0.495	0.482
+DCS (total)	1 (2)	4 (14)	0.024	0.024 (0.048)	0.014	0.014 (0.049)
+total nr. of tags	41	278	41	42	278	288
+
+Values from family size distribution
+	duplex	ab	ba	sum
+FS=1	2	30	31	63
+FS=2	0	3	2	5
+FS=3	0	3	5	8
+FS=4	2	3	4	9
+FS=5	0	2	1	3
+FS=6	0	1	4	5
+FS=7	0	1	2	3
+FS=8	0	1	2	3
+FS=9	0	0	2	2
+FS=10	1	1	1	3
+FS=11	0	0	1	1
+FS=12	0	1	2	3
+FS=13	1	1	1	3
+FS=14	0	0	0	0
+FS=15	0	0	0	0
+FS=16	0	0	0	0
+FS=17	0	0	0	0
+FS=18	0	0	0	0
+FS=19	0	0	0	0
+FS=20	0	0	0	0
+FS>20	0	0	1	1
+
+Dataset:	fsd_data4.tab
+max. family size:	21
+absolute frequency:	1
+relative frequency:	0.009
+
+	singletons:			family size > 20:
+	nr. of tags	rel. freq of tags	rel.freq of PE reads	nr. of tags	rel. freq of tags	nr. of PE reads	rel. freq of PE reads	total nr. of tags	total nr. of PE reads
+fsd_data4.tab	63	0.562	0.167	1	0.009	21	0.056	112	378
+
+The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS)
+Whereas the total frequencies were calculated from the whole dataset (=including the DCS).
+
+FS >= 1	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	47	123	0.431	0.339	0.420	0.325
+SSCS ba	59	222	0.488	0.481	0.476	0.468
+DCS (total)	3 (6)	18 (33)	0.028	0.027 (0.054)	0.050	0.048 (0.087)
+total nr. of tags	109	363	109	112	363	378
+
+FS >= 3	nr. of tags	nr. of PE reads	rel. freq of tags		rel. freq of PE reads:
+			unique:	total	unique	total:
+SSCS ab	14	87	0.341	0.259	0.313	0.224
+SSCS ba	26	187	0.491	0.481	0.495	0.482
+DCS (total)	1 (2)	4 (14)	0.024	0.024 (0.048)	0.014	0.014 (0.049)
+total nr. of tags	41	278	41	42	278	288
+
+Values from family size distribution
+	duplex	ab	ba	sum
+FS=1	2	30	31	63
+FS=2	0	3	2	5
+FS=3	0	3	5	8
+FS=4	2	3	4	9
+FS=5	0	2	1	3
+FS=6	0	1	4	5
+FS=7	0	1	2	3
+FS=8	0	1	2	3
+FS=9	0	0	2	2
+FS=10	1	1	1	3
+FS=11	0	0	1	1
+FS=12	0	1	2	3
+FS=13	1	1	1	3
+FS=14	0	0	0	0
+FS=15	0	0	0	0
+FS=16	0	0	0	0
+FS=17	0	0	0	0
+FS=18	0	0	0	0
+FS=19	0	0	0	0
+FS=20	0	0	0	0
+FS>20	0	0	1	1