Mercurial > repos > mheinzl > fsd
diff test-data/fsd_output2.tab @ 17:2e517a54eedc draft
planemo upload for repository https://github.com/monikaheinzl/duplexanalysis_galaxy/tree/master/tools/fsd commit b8a2f7b7615b2bcd3b602027af31f4e677da94f6-dirty
| author | mheinzl |
|---|---|
| date | Tue, 02 Apr 2019 05:10:09 -0400 |
| parents | |
| children | c825a29a7d9f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fsd_output2.tab Tue Apr 02 05:10:09 2019 -0400 @@ -0,0 +1,174 @@ +Values from family size distribution with all datasets + +Family size fsd_data1.tab fsd_data2.tab fsd_data3.tab +FS=1 63 63 63 +FS=2 5 5 5 +FS=3 8 8 8 +FS=4 9 9 9 +FS=5 3 3 3 +FS=6 5 5 5 +FS=7 3 3 3 +FS=8 3 3 3 +FS=9 2 2 2 +FS=10 3 3 3 +FS=11 1 1 1 +FS=12 3 3 3 +FS=13 3 3 3 +FS=14 0 0 0 +FS=15 0 0 0 +FS=16 0 0 0 +FS=17 0 0 0 +FS=18 0 0 0 +FS=19 0 0 0 +FS=20 0 0 0 +FS>20 1 1 1 +sum 112 112 112 +Dataset: fsd_data1.tab +max. family size: 21 +absolute frequency: 1 +relative frequency: 0.009 + + singletons: family size > 20: + nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads +fsd_data1.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 + +The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) +Whereas the total frequencies were calculated from the whole dataset (=including the DCS). + +FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: + unique: total unique total: +SSCS ab 47 123 0.431 0.339 0.420 0.325 +SSCS ba 59 222 0.488 0.481 0.476 0.468 +DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) +total nr. of tags 109 363 109 112 363 378 + +FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: + unique: total unique total: +SSCS ab 14 87 0.341 0.259 0.313 0.224 +SSCS ba 26 187 0.491 0.481 0.495 0.482 +DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) +total nr. of tags 41 278 41 42 278 288 + +Values from family size distribution + duplex ab ba sum +FS=1 2 30 31 63 +FS=2 0 3 2 5 +FS=3 0 3 5 8 +FS=4 2 3 4 9 +FS=5 0 2 1 3 +FS=6 0 1 4 5 +FS=7 0 1 2 3 +FS=8 0 1 2 3 +FS=9 0 0 2 2 +FS=10 1 1 1 3 +FS=11 0 0 1 1 +FS=12 0 1 2 3 +FS=13 1 1 1 3 +FS=14 0 0 0 0 +FS=15 0 0 0 0 +FS=16 0 0 0 0 +FS=17 0 0 0 0 +FS=18 0 0 0 0 +FS=19 0 0 0 0 +FS=20 0 0 0 0 +FS>20 0 0 1 1 + +Dataset: fsd_data2.tab +max. family size: 21 +absolute frequency: 1 +relative frequency: 0.009 + + singletons: family size > 20: + nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads +fsd_data2.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 + +The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) +Whereas the total frequencies were calculated from the whole dataset (=including the DCS). + +FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: + unique: total unique total: +SSCS ab 47 123 0.431 0.339 0.420 0.325 +SSCS ba 59 222 0.488 0.481 0.476 0.468 +DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) +total nr. of tags 109 363 109 112 363 378 + +FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: + unique: total unique total: +SSCS ab 14 87 0.341 0.259 0.313 0.224 +SSCS ba 26 187 0.491 0.481 0.495 0.482 +DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) +total nr. of tags 41 278 41 42 278 288 + +Values from family size distribution + duplex ab ba sum +FS=1 2 30 31 63 +FS=2 0 3 2 5 +FS=3 0 3 5 8 +FS=4 2 3 4 9 +FS=5 0 2 1 3 +FS=6 0 1 4 5 +FS=7 0 1 2 3 +FS=8 0 1 2 3 +FS=9 0 0 2 2 +FS=10 1 1 1 3 +FS=11 0 0 1 1 +FS=12 0 1 2 3 +FS=13 1 1 1 3 +FS=14 0 0 0 0 +FS=15 0 0 0 0 +FS=16 0 0 0 0 +FS=17 0 0 0 0 +FS=18 0 0 0 0 +FS=19 0 0 0 0 +FS=20 0 0 0 0 +FS>20 0 0 1 1 + +Dataset: fsd_data3.tab +max. family size: 21 +absolute frequency: 1 +relative frequency: 0.009 + + singletons: family size > 20: + nr. of tags rel. freq of tags rel.freq of PE reads nr. of tags rel. freq of tags nr. of PE reads rel. freq of PE reads total nr. of tags total nr. of PE reads +fsd_data3.tab 63 0.562 0.167 1 0.009 21 0.056 112 378 + +The unique frequencies were calculated from the dataset where the tags occured only once (=ab without DCS, ba without DCS) +Whereas the total frequencies were calculated from the whole dataset (=including the DCS). + +FS >= 1 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: + unique: total unique total: +SSCS ab 47 123 0.431 0.339 0.420 0.325 +SSCS ba 59 222 0.488 0.481 0.476 0.468 +DCS (total) 3 (6) 18 (33) 0.028 0.027 (0.054) 0.050 0.048 (0.087) +total nr. of tags 109 363 109 112 363 378 + +FS >= 3 nr. of tags nr. of PE reads rel. freq of tags rel. freq of PE reads: + unique: total unique total: +SSCS ab 14 87 0.341 0.259 0.313 0.224 +SSCS ba 26 187 0.491 0.481 0.495 0.482 +DCS (total) 1 (2) 4 (14) 0.024 0.024 (0.048) 0.014 0.014 (0.049) +total nr. of tags 41 278 41 42 278 288 + +Values from family size distribution + duplex ab ba sum +FS=1 2 30 31 63 +FS=2 0 3 2 5 +FS=3 0 3 5 8 +FS=4 2 3 4 9 +FS=5 0 2 1 3 +FS=6 0 1 4 5 +FS=7 0 1 2 3 +FS=8 0 1 2 3 +FS=9 0 0 2 2 +FS=10 1 1 1 3 +FS=11 0 0 1 1 +FS=12 0 1 2 3 +FS=13 1 1 1 3 +FS=14 0 0 0 0 +FS=15 0 0 0 0 +FS=16 0 0 0 0 +FS=17 0 0 0 0 +FS=18 0 0 0 0 +FS=19 0 0 0 0 +FS=20 0 0 0 0 +FS>20 0 0 1 1